Wall clock time and date at job start Wed Apr 1 2020 00:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.52208 * 2 1 4 4 C 1.53036 * 109.49941 * 120.07971 * 2 1 3 5 5 C 1.53042 * 109.53785 * 181.31618 * 4 2 1 6 6 C 1.53198 * 109.31411 * 298.63851 * 5 4 2 7 7 N 1.46929 * 108.77514 * 54.63211 * 6 5 4 8 8 C 1.34772 * 120.62987 * 126.36596 * 7 6 5 9 9 O 1.21353 * 120.00348 * 188.23153 * 8 7 6 10 10 C 1.49451 * 120.00130 * 8.23824 * 8 7 6 11 11 O 1.21349 * 119.99629 * 6.79326 * 10 8 7 12 12 N 1.34773 * 120.00065 * 186.79833 * 10 8 7 13 13 C 1.46501 * 120.00096 * 179.97438 * 12 10 8 14 14 C 1.52990 * 109.47437 * 180.02562 * 13 12 10 15 15 O 1.42898 * 109.47487 * 64.99559 * 14 13 12 16 16 C 1.42901 * 114.00289 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.47173 * 180.02562 * 16 15 14 18 18 N 1.46502 * 109.46800 * 65.00252 * 17 16 15 19 19 C 1.46501 * 119.99727 * 90.00286 * 18 17 16 20 20 C 1.36937 * 119.99756 * 269.99516 * 18 17 16 21 21 H 1.08002 * 120.00107 * 19.54019 * 20 18 17 22 22 C 1.38821 * 119.99751 * 199.53121 * 20 18 17 23 23 N 1.31617 * 119.99969 * 13.73747 * 22 20 18 24 24 Si 1.86801 * 119.99635 * 193.73726 * 22 20 18 25 25 H 1.48495 * 109.47250 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.46725 * 120.00416 * 24 22 20 27 27 H 1.48498 * 109.46774 * 239.99936 * 24 22 20 28 28 C 1.46933 * 118.73882 * 306.64537 * 7 6 5 29 29 H 1.09000 * 109.46727 * 299.91661 * 1 2 3 30 30 H 1.08999 * 109.47359 * 59.91670 * 1 2 3 31 31 H 1.08999 * 109.46773 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.45538 * 61.30196 * 4 2 1 33 33 H 1.08992 * 109.46713 * 301.33964 * 4 2 1 34 34 H 1.09002 * 109.49919 * 178.68850 * 5 4 2 35 35 H 1.09000 * 109.52346 * 58.60099 * 5 4 2 36 36 H 1.09002 * 109.58351 * 294.84937 * 6 5 4 37 37 H 1.08990 * 109.58904 * 174.42067 * 6 5 4 38 38 H 0.96998 * 120.00526 * 359.97438 * 12 10 8 39 39 H 1.08997 * 109.47302 * 59.99449 * 13 12 10 40 40 H 1.09002 * 109.46812 * 300.00052 * 13 12 10 41 41 H 1.09004 * 109.47275 * 305.00042 * 14 13 12 42 42 H 1.09007 * 109.47712 * 184.99892 * 14 13 12 43 43 H 1.09004 * 109.46922 * 60.00102 * 16 15 14 44 44 H 1.09001 * 109.47112 * 300.00363 * 16 15 14 45 45 H 1.09001 * 109.46846 * 185.00011 * 17 16 15 46 46 H 1.09000 * 109.46897 * 305.00193 * 17 16 15 47 47 H 1.08997 * 109.47364 * 95.25564 * 19 18 17 48 48 H 1.09002 * 109.46721 * 215.24989 * 19 18 17 49 49 H 1.08992 * 109.47276 * 335.24854 * 19 18 17 50 50 H 0.96993 * 119.99983 * 179.97438 * 23 22 20 51 51 H 1.08999 * 109.58243 * 173.14401 * 28 7 6 52 52 H 1.08997 * 109.58225 * 293.56728 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0409 -0.7230 1.2483 5 6 3.5709 -0.6949 1.2659 6 6 4.1054 -1.4266 0.0306 7 7 3.5046 -0.8290 -1.1697 8 6 4.2811 -0.3854 -2.1780 9 8 3.7878 0.2391 -3.0942 10 6 5.7496 -0.6625 -2.1679 11 8 6.2240 -1.3895 -1.3200 12 7 6.5470 -0.1049 -3.1004 13 6 7.9867 -0.3762 -3.0902 14 6 8.6551 0.3731 -4.2445 15 8 8.5341 1.7811 -4.0320 16 6 9.1284 2.5771 -5.0592 17 6 8.9403 4.0592 -4.7290 18 7 9.6816 4.3854 -3.5082 19 6 11.0738 4.8334 -3.5943 20 6 9.0731 4.2716 -2.2867 21 1 8.1887 3.6611 -2.1787 22 6 9.5930 4.9409 -1.1873 23 7 10.4921 5.8870 -1.3575 24 14 9.0166 4.4988 0.5337 25 1 8.0094 3.4105 0.4540 26 1 10.1757 4.0418 1.3417 27 1 8.4070 5.6922 1.1734 28 6 2.0415 -0.7186 -1.2472 29 1 -0.3633 0.5125 0.8907 30 1 -0.3634 0.5151 -0.8892 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6968 -1.7573 1.2352 33 1 1.6583 -0.2246 2.1389 34 1 3.9336 -1.1897 2.1670 35 1 3.9164 0.3388 1.2542 36 1 3.8376 -2.4817 0.0866 37 1 5.1896 -1.3245 -0.0140 38 1 6.1679 0.4759 -3.7784 39 1 8.1556 -1.4468 -3.2053 40 1 8.4128 -0.0408 -2.1446 41 1 8.1689 0.1042 -5.1822 42 1 9.7099 0.1021 -4.2913 43 1 8.6516 2.3537 -6.0136 44 1 10.1930 2.3518 -5.1234 45 1 9.3142 4.6655 -5.5541 46 1 7.8809 4.2659 -4.5771 47 1 11.1059 5.9228 -3.5890 48 1 11.6324 4.4493 -2.7407 49 1 11.5188 4.4611 -4.5169 50 1 10.8551 6.3549 -0.5893 51 1 1.7645 -0.1495 -2.1347 52 1 1.6021 -1.7148 -1.2976 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700707097.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:32 Heat of formation + Delta-G solvation = -105.530922 kcal Electronic energy + Delta-G solvation = -30964.253776 eV Core-core repulsion = 26771.289442 eV Total energy + Delta-G solvation = -4192.964334 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.08884 -40.11399 -39.03593 -38.81961 -37.28164 -36.04153 -34.66256 -33.42729 -32.88903 -31.13889 -29.50099 -28.19516 -27.87345 -27.08995 -24.98318 -24.74380 -23.33521 -22.97272 -22.08954 -21.61743 -20.69434 -18.80145 -18.63459 -18.26143 -17.68893 -17.43171 -17.03230 -16.87092 -16.41819 -16.18986 -15.88288 -15.58184 -15.35640 -15.29141 -15.19702 -14.95151 -14.74302 -14.53776 -14.12802 -14.07981 -13.85514 -13.64113 -13.29088 -13.09776 -12.92509 -12.81327 -12.70577 -12.66213 -12.54883 -12.49502 -12.18638 -12.07556 -12.00865 -11.86531 -11.84462 -11.71609 -11.68409 -11.36669 -10.59069 -10.44960 -10.37435 -10.18730 -9.84113 -8.74285 -7.78013 -5.20366 0.24500 1.21927 1.40663 1.42693 1.53062 2.03198 2.39395 2.52447 2.86848 3.22661 3.35834 3.71127 3.75771 3.80828 3.88007 3.93795 4.03255 4.19732 4.27516 4.37200 4.40861 4.50819 4.54867 4.57989 4.60604 4.62042 4.67526 4.72776 4.78978 4.83014 4.85229 4.88613 4.90093 4.92679 5.02910 5.11542 5.15947 5.19937 5.25237 5.31063 5.39487 5.42623 5.46324 5.71028 5.78389 5.89053 6.14099 6.36696 6.51848 6.60618 6.84462 7.22263 7.95183 8.35053 9.26165 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010938 B = 0.002996 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.219770 B = 9343.799039 C =10640.933530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.107 4.107 3 H 0.052 0.948 4 C -0.111 4.111 5 C -0.137 4.137 6 C 0.067 3.933 7 N -0.578 5.578 8 C 0.503 3.497 9 O -0.547 6.547 10 C 0.504 3.496 11 O -0.530 6.530 12 N -0.682 5.682 13 C 0.123 3.877 14 C 0.047 3.953 15 O -0.396 6.396 16 C 0.054 3.946 17 C 0.141 3.859 18 N -0.616 5.616 19 C 0.178 3.822 20 C -0.224 4.224 21 H 0.065 0.935 22 C -0.062 4.062 23 N -0.945 5.945 24 Si 0.956 3.044 25 H -0.278 1.278 26 H -0.291 1.291 27 H -0.293 1.293 28 C 0.109 3.891 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.044 0.956 36 H 0.088 0.912 37 H 0.121 0.879 38 H 0.417 0.583 39 H 0.110 0.890 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.041 0.959 45 H 0.076 0.924 46 H 0.043 0.957 47 H 0.002 0.998 48 H 0.014 0.986 49 H 0.033 0.967 50 H 0.244 0.756 51 H 0.080 0.920 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.687 -19.109 -2.043 24.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 H 0.071 0.929 4 C -0.148 4.148 5 C -0.175 4.175 6 C -0.054 4.054 7 N -0.311 5.311 8 C 0.286 3.714 9 O -0.426 6.426 10 C 0.285 3.715 11 O -0.410 6.410 12 N -0.333 5.333 13 C 0.001 3.999 14 C -0.030 4.030 15 O -0.316 6.316 16 C -0.025 4.025 17 C 0.015 3.985 18 N -0.339 5.339 19 C 0.033 3.967 20 C -0.354 4.354 21 H 0.083 0.917 22 C -0.255 4.255 23 N -0.594 5.594 24 Si 0.786 3.214 25 H -0.203 1.203 26 H -0.218 1.218 27 H -0.220 1.220 28 C -0.012 4.012 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.139 0.861 38 H 0.254 0.746 39 H 0.128 0.872 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.059 0.941 45 H 0.094 0.906 46 H 0.061 0.939 47 H 0.021 0.979 48 H 0.033 0.967 49 H 0.051 0.949 50 H 0.054 0.946 51 H 0.099 0.901 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.606 -19.126 -1.682 24.742 hybrid contribution 0.098 0.540 0.621 0.829 sum -15.507 -18.586 -1.060 24.229 Atomic orbital electron populations 1.21722 0.92362 1.03077 1.02486 1.21421 0.97511 0.99040 0.94648 0.92899 1.21608 0.94193 1.01693 0.97313 1.21970 0.97020 1.00384 0.98115 1.22915 1.02477 0.97626 0.82356 1.48110 1.07534 1.57854 1.17570 1.20161 0.87773 0.80103 0.83374 1.90735 1.75249 1.39658 1.36931 1.20180 0.87789 0.81344 0.82188 1.90483 1.76183 1.38227 1.36068 1.45807 1.08620 1.47946 1.30953 1.21629 0.77922 1.00744 0.99655 1.22816 1.00794 0.82002 0.97379 1.88088 1.78973 1.16263 1.48261 1.23241 0.96532 0.92786 0.89903 1.21050 0.95975 0.92751 0.88688 1.44136 1.09540 1.77976 1.02277 1.20537 0.83977 0.96203 0.95957 1.19449 1.09260 1.20262 0.86467 0.91718 1.25560 1.00960 0.97718 1.01310 1.70235 1.34700 1.25657 1.28823 0.85353 0.77300 0.77135 0.81643 1.20271 1.21765 1.22038 1.21912 0.77300 1.02356 0.99655 0.91554 0.92508 0.90941 0.89925 0.90635 0.88709 0.93696 0.89386 0.86146 0.74586 0.87229 0.92241 0.90554 0.90564 0.91167 0.94115 0.90630 0.93856 0.97920 0.96697 0.94887 0.94642 0.90146 0.88687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.20 71.98 0.66 -0.93 16 2 C -0.11 -1.73 2.86 -10.86 -0.03 -1.76 16 3 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.11 -1.53 5.17 30.62 0.16 -1.37 16 5 C -0.14 -2.44 6.08 30.67 0.19 -2.25 16 6 C 0.07 1.39 6.00 86.36 0.52 1.91 16 7 N -0.58 -13.70 2.98 -821.29 -2.45 -16.15 16 8 C 0.50 14.62 7.74 87.27 0.68 15.29 16 9 O -0.55 -18.03 15.92 -3.26 -0.05 -18.08 16 10 C 0.50 14.81 7.74 87.27 0.68 15.49 16 11 O -0.53 -16.34 13.17 -3.24 -0.04 -16.39 16 12 N -0.68 -18.84 5.49 -464.43 -2.55 -21.39 16 13 C 0.12 3.13 6.06 86.38 0.52 3.65 16 14 C 0.05 1.14 6.07 71.98 0.44 1.57 16 15 O -0.40 -13.77 9.59 -148.98 -1.43 -15.20 16 16 C 0.05 1.72 6.28 71.98 0.45 2.17 16 17 C 0.14 5.58 6.07 86.38 0.52 6.11 16 18 N -0.62 -31.37 2.91 -726.92 -2.11 -33.48 16 19 C 0.18 8.92 8.97 127.77 1.15 10.06 16 20 C -0.22 -12.80 9.22 84.04 0.77 -12.02 16 21 H 0.07 3.77 7.67 -2.91 -0.02 3.75 16 22 C -0.06 -3.66 5.10 84.86 0.43 -3.23 16 23 N -0.94 -58.00 10.55 21.65 0.23 -57.77 16 24 Si 0.96 48.28 29.58 68.60 2.03 50.31 16 25 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 26 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 27 H -0.29 -14.69 7.11 99.48 0.71 -13.99 16 28 C 0.11 2.04 5.70 86.22 0.49 2.54 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.12 3.12 4.29 -49.59 -0.21 2.91 16 38 H 0.42 11.42 7.96 -92.71 -0.74 10.68 16 39 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 42 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 43 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.08 2.61 8.07 -2.39 -0.02 2.59 16 46 H 0.04 1.79 8.04 -2.39 -0.02 1.77 16 47 H 0.00 0.14 7.42 -2.39 -0.02 0.12 16 48 H 0.01 0.80 7.13 -2.39 -0.02 0.78 16 49 H 0.03 1.36 8.03 -2.39 -0.02 1.34 16 50 H 0.24 14.60 8.31 -92.71 -0.77 13.82 16 51 H 0.08 1.75 7.00 -2.39 -0.02 1.74 16 52 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -73.55 413.96 1.20 -72.34 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -0.04 Total: 18.58 kcal Atomic # 6 Polarization: 29.60 SS G_CDS: 7.63 Total: 37.23 kcal Atomic # 7 Polarization: -121.90 SS G_CDS: -6.88 Total: -128.79 kcal Atomic # 8 Polarization: -48.15 SS G_CDS: -1.52 Total: -49.67 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 2.03 Total: 50.31 kcal Total: -73.55 1.20 -72.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700707097.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.190 kcal (2) G-P(sol) polarization free energy of solvation -73.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds