Wall clock time and date at job start Wed Apr 1 2020 00:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53008 * 109.46883 * 2 1 4 4 O 1.42899 * 109.47213 * 120.00295 * 2 1 3 5 5 C 1.42903 * 113.99629 * 150.00082 * 4 2 1 6 6 C 1.53000 * 109.46726 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.46912 * 179.97438 * 6 5 4 8 8 O 1.21278 * 119.99985 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00161 * 179.97438 * 7 6 5 10 10 C 1.47425 * 125.64705 * 359.69749 * 9 7 6 11 11 C 1.55121 * 104.72487 * 155.81308 * 10 9 7 12 12 H 1.08994 * 111.19610 * 279.19149 * 11 10 9 13 13 N 1.46901 * 110.93934 * 155.28739 * 11 10 9 14 14 C 1.46894 * 110.99870 * 92.95929 * 13 11 10 15 15 C 1.50707 * 109.47022 * 179.97438 * 14 13 11 16 16 O 1.21287 * 120.00137 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99898 * 180.02562 * 15 14 13 18 18 C 1.37092 * 119.99864 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00252 * 359.97438 * 18 17 15 20 20 C 1.38947 * 120.00156 * 179.97438 * 18 17 15 21 21 N 1.31416 * 120.00175 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00227 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47141 * 89.99574 * 22 20 18 24 24 H 1.48502 * 109.47343 * 209.99561 * 22 20 18 25 25 H 1.48494 * 109.47369 * 329.99821 * 22 20 18 26 26 C 1.55158 * 101.48608 * 37.29579 * 11 10 9 27 27 C 1.47021 * 125.65126 * 180.02562 * 9 7 6 28 28 H 1.09002 * 109.88219 * 61.44826 * 27 9 7 29 29 C 1.52996 * 109.87907 * 300.44269 * 27 9 7 30 30 H 1.08998 * 109.46779 * 299.99642 * 1 2 3 31 31 H 1.08997 * 109.46894 * 59.99536 * 1 2 3 32 32 H 1.08993 * 109.46742 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47142 * 240.00757 * 2 1 3 34 34 H 1.08994 * 109.47301 * 300.00219 * 3 2 1 35 35 H 1.08999 * 109.46614 * 60.00433 * 3 2 1 36 36 H 1.09000 * 109.46387 * 179.97438 * 3 2 1 37 37 H 1.09002 * 109.47382 * 59.99956 * 5 4 2 38 38 H 1.09001 * 109.46938 * 299.99942 * 5 4 2 39 39 H 1.09001 * 109.47194 * 299.99575 * 6 5 4 40 40 H 1.08992 * 109.47399 * 59.99748 * 6 5 4 41 41 H 1.09002 * 110.36359 * 274.74805 * 10 9 7 42 42 H 1.09007 * 110.36640 * 37.06092 * 10 9 7 43 43 H 1.00898 * 111.00187 * 329.00134 * 13 11 10 44 44 H 1.08992 * 109.47364 * 299.99516 * 14 13 11 45 45 H 1.08997 * 109.47344 * 60.00111 * 14 13 11 46 46 H 0.97005 * 119.99954 * 359.97438 * 17 15 14 47 47 H 0.96991 * 120.00097 * 180.02562 * 21 20 18 48 48 H 1.09004 * 110.72578 * 205.97145 * 26 11 10 49 49 H 1.08999 * 110.87734 * 82.76365 * 26 11 10 50 50 H 1.09003 * 109.47571 * 61.45464 * 29 27 9 51 51 H 1.08999 * 109.47126 * 181.45383 * 29 27 9 52 52 H 1.09001 * 109.47518 * 301.45348 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2661 -1.3245 0.9884 6 6 3.6756 -2.0092 2.2939 7 6 5.0037 -2.6961 2.1058 8 8 5.5674 -2.6427 1.0333 9 7 5.5656 -3.3688 3.1296 10 6 4.9959 -3.5071 4.4823 11 6 5.6324 -4.8039 5.0475 12 1 5.1163 -5.6898 4.6776 13 7 5.6502 -4.7831 6.5162 14 6 4.4540 -5.4345 7.0664 15 6 4.5078 -5.3945 8.5720 16 8 5.4501 -4.8748 9.1315 17 7 3.5092 -5.9370 9.2966 18 6 3.5579 -5.9001 10.6662 19 1 4.3966 -5.4366 11.1645 20 6 2.5282 -6.4589 11.4133 21 7 1.5075 -7.0224 10.8071 22 14 2.5949 -6.4092 13.2794 23 1 1.9400 -5.1681 13.7653 24 1 1.8863 -7.5916 13.8317 25 1 4.0113 -6.4283 13.7249 26 6 7.0710 -4.7179 4.4727 27 6 6.8512 -4.0805 3.0845 28 1 7.6558 -3.3788 2.8643 29 6 6.8047 -5.1713 2.0127 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3632 -1.0276 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 4.0201 -0.5873 0.7123 38 1 3.1809 -2.0706 0.1984 39 1 3.7606 -1.2634 3.0843 40 1 2.9216 -2.7463 2.5697 41 1 5.2672 -2.6492 5.0977 42 1 3.9120 -3.6090 4.4289 43 1 5.7404 -3.8401 6.8635 44 1 3.5632 -4.9105 6.7203 45 1 4.4186 -6.4713 6.7320 46 1 2.7558 -6.3529 8.8491 47 1 0.7885 -7.4121 11.3286 48 1 7.5079 -5.7119 4.3760 49 1 7.7001 -4.0806 5.0940 50 1 6.6361 -4.7153 1.0371 51 1 7.7514 -5.7113 2.0026 52 1 5.9934 -5.8645 2.2348 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700834557.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:31 Heat of formation + Delta-G solvation = -126.220723 kcal Electronic energy + Delta-G solvation = -29648.213397 eV Core-core repulsion = 25454.351886 eV Total energy + Delta-G solvation = -4193.861511 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.60159 -38.88620 -38.40060 -37.75593 -34.88033 -33.83407 -33.74268 -32.41536 -31.28049 -30.58719 -29.96005 -27.60881 -26.39284 -25.95984 -24.58854 -23.91736 -22.10750 -21.68795 -20.72763 -19.33769 -19.15578 -17.95636 -17.71883 -16.84454 -16.53001 -16.14395 -16.01140 -15.57584 -15.31621 -14.91653 -14.75468 -14.52951 -14.12743 -13.96335 -13.78367 -13.65140 -13.36748 -13.21718 -13.13892 -12.96157 -12.77137 -12.61327 -12.44469 -12.40388 -12.14653 -12.08652 -11.83990 -11.72098 -11.55989 -11.51206 -11.42103 -11.09534 -11.05688 -11.01851 -10.78492 -10.41707 -10.24888 -10.04542 -9.88823 -9.54500 -8.93919 -8.53642 -8.17318 -8.00088 -6.45048 -3.86016 2.36931 2.53366 3.15684 3.24881 3.30548 3.36956 3.85538 3.97369 4.18153 4.30511 4.41355 4.46880 4.56933 4.64027 4.71026 4.77266 4.84570 4.88491 4.91559 5.05370 5.10836 5.12945 5.18069 5.21756 5.22100 5.30238 5.38442 5.41843 5.44290 5.46749 5.49254 5.55184 5.57072 5.69648 5.75714 5.80735 5.84766 5.85999 5.90983 5.92900 6.07614 6.19941 6.23856 6.90287 7.07603 7.24173 7.50406 7.52271 7.89156 8.02340 8.56954 9.14324 9.50061 10.00999 10.72534 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010253 B = 0.002048 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.176580 B =13666.377469 C =15851.259854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.082 3.918 3 C -0.176 4.176 4 O -0.385 6.385 5 C 0.080 3.920 6 C -0.137 4.137 7 C 0.535 3.465 8 O -0.543 6.543 9 N -0.610 5.610 10 C 0.065 3.935 11 C 0.080 3.920 12 H 0.094 0.906 13 N -0.652 5.652 14 C 0.048 3.952 15 C 0.439 3.561 16 O -0.583 6.583 17 N -0.562 5.562 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C -0.117 4.117 27 C 0.134 3.866 28 H 0.076 0.924 29 C -0.163 4.163 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.353 0.647 44 H 0.046 0.954 45 H 0.088 0.912 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.088 0.912 49 H 0.084 0.916 50 H 0.068 0.932 51 H 0.065 0.935 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.036 9.630 -22.599 24.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.025 3.975 3 C -0.234 4.234 4 O -0.305 6.305 5 C 0.003 3.997 6 C -0.177 4.177 7 C 0.324 3.676 8 O -0.421 6.421 9 N -0.344 5.344 10 C -0.060 4.060 11 C -0.032 4.032 12 H 0.112 0.888 13 N -0.284 5.284 14 C -0.084 4.084 15 C 0.225 3.775 16 O -0.468 6.468 17 N -0.199 5.199 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.542 5.542 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.155 4.155 27 C 0.031 3.969 28 H 0.094 0.906 29 C -0.221 4.221 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.174 0.826 44 H 0.064 0.936 45 H 0.106 0.894 46 H 0.226 0.774 47 H 0.082 0.918 48 H 0.106 0.894 49 H 0.102 0.898 50 H 0.087 0.913 51 H 0.084 0.916 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.054 9.383 -22.514 24.478 hybrid contribution -1.159 0.396 0.367 1.278 sum 0.895 9.779 -22.148 24.227 Atomic orbital electron populations 1.21870 0.93491 1.02811 1.02576 1.22076 0.95002 0.92422 0.88039 1.22310 1.01652 0.96773 1.02630 1.87869 1.36568 1.70123 1.35949 1.22123 0.85529 0.95895 0.96186 1.21471 0.94981 1.01315 0.99963 1.20045 0.86571 0.78127 0.82845 1.90691 1.64448 1.61489 1.25475 1.48474 1.22329 1.52184 1.11423 1.23358 0.99374 0.99873 0.83384 1.22832 0.95842 0.96098 0.88468 0.88785 1.60117 1.39533 1.25350 1.03381 1.21758 0.91162 1.00288 0.95195 1.19766 0.84923 0.84978 0.87881 1.90530 1.34745 1.49324 1.72162 1.41863 1.20073 1.50976 1.06965 1.19699 1.06846 1.35433 0.80961 0.87885 1.25272 0.95264 0.96628 1.00780 1.69607 1.09706 1.38242 1.36665 0.85851 0.78604 0.77678 0.82127 1.20404 1.20915 1.19388 1.22743 0.97203 1.02210 0.93392 1.21639 0.85365 0.93680 0.96240 0.90630 1.22147 1.02162 0.98129 0.99619 0.91674 0.91255 0.91927 0.92160 0.91638 0.91684 0.92433 0.92538 0.92500 0.88025 0.87995 0.90648 0.90319 0.82602 0.93631 0.89402 0.77444 0.91832 0.89369 0.89780 0.91282 0.91573 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.56 37.16 0.36 -0.64 16 2 C 0.08 0.65 3.34 -26.72 -0.09 0.56 16 3 C -0.18 -1.22 9.53 37.16 0.35 -0.86 16 4 O -0.39 -3.87 9.99 -35.23 -0.35 -4.22 16 5 C 0.08 0.77 5.04 37.16 0.19 0.96 16 6 C -0.14 -1.26 5.07 -27.88 -0.14 -1.41 16 7 C 0.54 6.05 7.63 -10.98 -0.08 5.97 16 8 O -0.54 -7.66 14.88 5.56 0.08 -7.58 16 9 N -0.61 -6.29 3.08 -162.88 -0.50 -6.79 16 10 C 0.07 0.62 6.29 -2.41 -0.02 0.60 16 11 C 0.08 0.84 3.40 -65.45 -0.22 0.62 16 12 H 0.09 0.98 7.83 -51.93 -0.41 0.57 16 13 N -0.65 -9.25 6.04 -105.61 -0.64 -9.89 16 14 C 0.05 0.77 6.03 -4.98 -0.03 0.74 16 15 C 0.44 9.87 7.82 -10.98 -0.09 9.78 16 16 O -0.58 -15.25 15.78 5.55 0.09 -15.16 16 17 N -0.56 -13.78 5.29 -10.96 -0.06 -13.84 16 18 C -0.30 -8.18 9.68 -14.94 -0.14 -8.33 16 19 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.07 13.05 55.50 0.72 -23.34 16 22 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 C -0.12 -1.14 6.19 -24.90 -0.15 -1.29 16 27 C 0.13 1.33 3.49 -66.95 -0.23 1.10 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 C -0.16 -1.56 9.06 37.16 0.34 -1.23 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.44 7.79 -51.93 -0.40 0.03 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.42 7.87 -51.93 -0.41 0.01 16 37 H 0.06 0.56 7.83 -51.93 -0.41 0.15 16 38 H 0.06 0.56 8.04 -51.93 -0.42 0.14 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.10 0.85 7.85 -51.93 -0.41 0.44 16 41 H 0.08 0.70 7.76 -51.93 -0.40 0.30 16 42 H 0.08 0.68 7.48 -51.93 -0.39 0.29 16 43 H 0.35 5.16 7.89 -39.29 -0.31 4.85 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.09 1.30 8.09 -51.93 -0.42 0.88 16 46 H 0.39 9.16 7.90 -40.82 -0.32 8.84 16 47 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 48 H 0.09 0.82 7.83 -51.93 -0.41 0.41 16 49 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.07 0.79 6.75 -51.93 -0.35 0.44 16 51 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 52 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 422.52 15.07 6.37 6.37 Total: -1.00 -32.14 422.52 -8.59 -40.72 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -9.21 Total: 10.97 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -0.06 Total: 7.07 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: -0.47 Total: -53.86 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.18 Total: -26.96 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -32.14 -8.59 -40.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700834557.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.496 kcal (2) G-P(sol) polarization free energy of solvation -32.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds