Wall clock time and date at job start Wed Apr 1 2020 00:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53008 * 109.46883 * 2 1 4 4 O 1.42899 * 109.47213 * 120.00295 * 2 1 3 5 5 C 1.42903 * 113.99629 * 150.00082 * 4 2 1 6 6 C 1.53000 * 109.46726 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.46912 * 179.97438 * 6 5 4 8 8 O 1.21278 * 119.99985 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00161 * 179.97438 * 7 6 5 10 10 C 1.47425 * 125.64705 * 359.69749 * 9 7 6 11 11 C 1.55121 * 104.72487 * 155.81308 * 10 9 7 12 12 H 1.08994 * 111.19610 * 279.19149 * 11 10 9 13 13 N 1.46901 * 110.93934 * 155.28739 * 11 10 9 14 14 C 1.46894 * 110.99870 * 92.95929 * 13 11 10 15 15 C 1.50707 * 109.47022 * 179.97438 * 14 13 11 16 16 O 1.21287 * 120.00137 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99898 * 180.02562 * 15 14 13 18 18 C 1.37092 * 119.99864 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00252 * 359.97438 * 18 17 15 20 20 C 1.38947 * 120.00156 * 179.97438 * 18 17 15 21 21 N 1.31416 * 120.00175 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00227 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47141 * 89.99574 * 22 20 18 24 24 H 1.48502 * 109.47343 * 209.99561 * 22 20 18 25 25 H 1.48494 * 109.47369 * 329.99821 * 22 20 18 26 26 C 1.55158 * 101.48608 * 37.29579 * 11 10 9 27 27 C 1.47021 * 125.65126 * 180.02562 * 9 7 6 28 28 H 1.09002 * 109.88219 * 61.44826 * 27 9 7 29 29 C 1.52996 * 109.87907 * 300.44269 * 27 9 7 30 30 H 1.08998 * 109.46779 * 299.99642 * 1 2 3 31 31 H 1.08997 * 109.46894 * 59.99536 * 1 2 3 32 32 H 1.08993 * 109.46742 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47142 * 240.00757 * 2 1 3 34 34 H 1.08994 * 109.47301 * 300.00219 * 3 2 1 35 35 H 1.08999 * 109.46614 * 60.00433 * 3 2 1 36 36 H 1.09000 * 109.46387 * 179.97438 * 3 2 1 37 37 H 1.09002 * 109.47382 * 59.99956 * 5 4 2 38 38 H 1.09001 * 109.46938 * 299.99942 * 5 4 2 39 39 H 1.09001 * 109.47194 * 299.99575 * 6 5 4 40 40 H 1.08992 * 109.47399 * 59.99748 * 6 5 4 41 41 H 1.09002 * 110.36359 * 274.74805 * 10 9 7 42 42 H 1.09007 * 110.36640 * 37.06092 * 10 9 7 43 43 H 1.00898 * 111.00187 * 329.00134 * 13 11 10 44 44 H 1.08992 * 109.47364 * 299.99516 * 14 13 11 45 45 H 1.08997 * 109.47344 * 60.00111 * 14 13 11 46 46 H 0.97005 * 119.99954 * 359.97438 * 17 15 14 47 47 H 0.96991 * 120.00097 * 180.02562 * 21 20 18 48 48 H 1.09004 * 110.72578 * 205.97145 * 26 11 10 49 49 H 1.08999 * 110.87734 * 82.76365 * 26 11 10 50 50 H 1.09003 * 109.47571 * 61.45464 * 29 27 9 51 51 H 1.08999 * 109.47126 * 181.45383 * 29 27 9 52 52 H 1.09001 * 109.47518 * 301.45348 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2661 -1.3245 0.9884 6 6 3.6756 -2.0092 2.2939 7 6 5.0037 -2.6961 2.1058 8 8 5.5674 -2.6427 1.0333 9 7 5.5656 -3.3688 3.1296 10 6 4.9959 -3.5071 4.4823 11 6 5.6324 -4.8039 5.0475 12 1 5.1163 -5.6898 4.6776 13 7 5.6502 -4.7831 6.5162 14 6 4.4540 -5.4345 7.0664 15 6 4.5078 -5.3945 8.5720 16 8 5.4501 -4.8748 9.1315 17 7 3.5092 -5.9370 9.2966 18 6 3.5579 -5.9001 10.6662 19 1 4.3966 -5.4366 11.1645 20 6 2.5282 -6.4589 11.4133 21 7 1.5075 -7.0224 10.8071 22 14 2.5949 -6.4092 13.2794 23 1 1.9400 -5.1681 13.7653 24 1 1.8863 -7.5916 13.8317 25 1 4.0113 -6.4283 13.7249 26 6 7.0710 -4.7179 4.4727 27 6 6.8512 -4.0805 3.0845 28 1 7.6558 -3.3788 2.8643 29 6 6.8047 -5.1713 2.0127 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3632 -1.0276 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 4.0201 -0.5873 0.7123 38 1 3.1809 -2.0706 0.1984 39 1 3.7606 -1.2634 3.0843 40 1 2.9216 -2.7463 2.5697 41 1 5.2672 -2.6492 5.0977 42 1 3.9120 -3.6090 4.4289 43 1 5.7404 -3.8401 6.8635 44 1 3.5632 -4.9105 6.7203 45 1 4.4186 -6.4713 6.7320 46 1 2.7558 -6.3529 8.8491 47 1 0.7885 -7.4121 11.3286 48 1 7.5079 -5.7119 4.3760 49 1 7.7001 -4.0806 5.0940 50 1 6.6361 -4.7153 1.0371 51 1 7.7514 -5.7113 2.0026 52 1 5.9934 -5.8645 2.2348 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700834557.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:28 Heat of formation + Delta-G solvation = -148.825551 kcal Electronic energy + Delta-G solvation = -29649.193615 eV Core-core repulsion = 25454.351886 eV Total energy + Delta-G solvation = -4194.841730 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.46528 -40.14890 -39.50365 -38.79274 -36.22996 -35.56605 -34.42990 -33.24983 -33.17346 -31.32443 -31.01662 -28.13931 -27.88715 -26.79230 -25.83327 -25.12568 -22.96759 -22.29376 -21.58875 -21.04613 -19.99416 -19.89529 -18.52183 -17.88136 -17.47096 -17.29195 -16.99703 -16.60870 -16.41625 -16.22441 -15.85244 -15.76798 -15.49553 -15.14936 -14.73944 -14.58874 -14.35396 -14.21471 -14.04048 -13.89329 -13.67280 -13.46483 -13.40202 -13.31762 -13.15877 -13.06357 -12.97863 -12.81618 -12.77255 -12.48555 -12.39310 -12.25736 -12.15424 -12.11782 -11.94321 -11.62885 -11.60458 -11.48121 -10.95424 -10.58781 -10.31171 -9.98644 -9.79085 -9.31507 -8.44534 -5.92671 1.39586 1.43811 1.50352 1.55962 1.73391 2.08922 2.30701 2.64657 2.94118 3.23310 3.39384 3.49740 3.69425 3.76208 3.88417 3.95417 4.02409 4.10434 4.12232 4.15134 4.26438 4.27638 4.35929 4.36853 4.43079 4.48421 4.60391 4.64991 4.68796 4.71408 4.72749 4.75594 4.80228 4.89251 4.90659 4.95259 4.96737 5.08098 5.12082 5.26737 5.29595 5.31579 5.41665 5.43794 5.90941 6.11378 6.22666 6.35689 6.43391 6.62857 7.03121 7.15608 7.59931 8.15106 8.72673 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010253 B = 0.002048 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.176580 B =13666.377469 C =15851.259854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.072 3.928 3 C -0.173 4.173 4 O -0.399 6.399 5 C 0.084 3.916 6 C -0.131 4.131 7 C 0.533 3.467 8 O -0.576 6.576 9 N -0.608 5.608 10 C 0.069 3.931 11 C 0.083 3.917 12 H 0.104 0.896 13 N -0.664 5.664 14 C 0.064 3.936 15 C 0.438 3.562 16 O -0.624 6.624 17 N -0.574 5.574 18 C -0.332 4.332 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.991 3.009 23 H -0.271 1.271 24 H -0.272 1.272 25 H -0.274 1.274 26 C -0.109 4.109 27 C 0.133 3.867 28 H 0.070 0.930 29 C -0.156 4.156 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.349 0.651 44 H 0.074 0.926 45 H 0.106 0.894 46 H 0.397 0.603 47 H 0.277 0.723 48 H 0.096 0.904 49 H 0.079 0.921 50 H 0.048 0.952 51 H 0.080 0.920 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.236 9.548 -23.100 24.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.015 3.985 3 C -0.231 4.231 4 O -0.319 6.319 5 C 0.007 3.993 6 C -0.171 4.171 7 C 0.323 3.677 8 O -0.456 6.456 9 N -0.341 5.341 10 C -0.056 4.056 11 C -0.028 4.028 12 H 0.122 0.878 13 N -0.296 5.296 14 C -0.068 4.068 15 C 0.225 3.775 16 O -0.510 6.510 17 N -0.211 5.211 18 C -0.461 4.461 19 H 0.097 0.903 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.197 1.197 24 H -0.197 1.197 25 H -0.199 1.199 26 C -0.148 4.148 27 C 0.030 3.970 28 H 0.088 0.912 29 C -0.214 4.214 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.097 0.903 42 H 0.112 0.888 43 H 0.170 0.830 44 H 0.092 0.908 45 H 0.124 0.876 46 H 0.231 0.769 47 H 0.086 0.914 48 H 0.114 0.886 49 H 0.098 0.902 50 H 0.067 0.933 51 H 0.099 0.901 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.239 9.292 -23.030 24.865 hybrid contribution -0.853 0.451 0.456 1.068 sum 0.386 9.744 -22.574 24.590 Atomic orbital electron populations 1.21878 0.92519 1.02810 1.03277 1.22309 0.95830 0.92780 0.87578 1.22291 1.01214 0.96319 1.03264 1.87847 1.36542 1.70388 1.37167 1.22040 0.85393 0.95571 0.96336 1.21444 0.94024 1.01615 0.99975 1.20383 0.87014 0.77889 0.82436 1.90679 1.65439 1.62729 1.26773 1.48509 1.22333 1.51739 1.11565 1.23355 1.00149 0.99367 0.82734 1.22836 0.96652 0.97077 0.86247 0.87790 1.60091 1.38855 1.25162 1.05478 1.21619 0.93127 1.02094 0.89991 1.20921 0.83293 0.82650 0.90617 1.90502 1.36072 1.50519 1.73912 1.41936 1.20963 1.51874 1.06337 1.19644 1.06914 1.36903 0.82668 0.90328 1.26005 0.94658 0.95876 1.04783 1.69663 1.09988 1.38328 1.38099 0.84958 0.78305 0.78162 0.77113 1.19665 1.19721 1.19854 1.22680 0.96698 1.02529 0.92873 1.21661 0.85201 0.93678 0.96468 0.91197 1.22082 1.03098 0.97923 0.98280 0.92174 0.89350 0.92269 0.91714 0.89898 0.92148 0.93095 0.93271 0.93033 0.87061 0.86733 0.90307 0.88785 0.83027 0.90808 0.87576 0.76918 0.91366 0.88572 0.90222 0.93281 0.90069 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.56 71.98 0.69 -1.09 16 2 C 0.07 1.07 3.34 30.60 0.10 1.17 16 3 C -0.17 -2.24 9.53 71.98 0.69 -1.55 16 4 O -0.40 -7.72 9.99 -148.98 -1.49 -9.21 16 5 C 0.08 1.57 5.04 71.98 0.36 1.93 16 6 C -0.13 -2.23 5.07 29.85 0.15 -2.08 16 7 C 0.53 11.53 7.63 87.66 0.67 12.20 16 8 O -0.58 -16.17 14.88 -3.02 -0.04 -16.21 16 9 N -0.61 -11.59 3.08 -787.62 -2.42 -14.01 16 10 C 0.07 1.14 6.29 86.93 0.55 1.68 16 11 C 0.08 1.56 3.40 46.38 0.16 1.71 16 12 H 0.10 1.81 7.83 -2.39 -0.02 1.79 16 13 N -0.66 -17.57 6.04 -488.05 -2.95 -20.51 16 14 C 0.06 1.90 6.03 85.56 0.52 2.41 16 15 C 0.44 19.49 7.82 87.66 0.69 20.18 16 16 O -0.62 -32.92 15.78 -3.05 -0.05 -32.97 16 17 N -0.57 -28.16 5.29 -306.98 -1.62 -29.78 16 18 C -0.33 -18.34 9.68 84.04 0.81 -17.53 16 19 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 20 C -0.01 -0.71 5.50 84.92 0.47 -0.24 16 21 N -0.92 -48.57 13.05 21.66 0.28 -48.29 16 22 Si 0.99 42.20 29.55 68.60 2.03 44.23 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 C -0.11 -1.92 6.19 31.78 0.20 -1.72 16 27 C 0.13 2.46 3.49 45.34 0.16 2.62 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 29 C -0.16 -2.79 9.06 71.98 0.65 -2.14 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 0.70 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.89 7.79 -2.39 -0.02 0.87 16 34 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.05 0.71 7.87 -2.39 -0.02 0.69 16 37 H 0.05 0.98 7.83 -2.39 -0.02 0.96 16 38 H 0.05 1.01 8.04 -2.39 -0.02 0.99 16 39 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.11 1.67 7.85 -2.39 -0.02 1.65 16 41 H 0.08 1.30 7.76 -2.39 -0.02 1.28 16 42 H 0.09 1.31 7.48 -2.38 -0.02 1.29 16 43 H 0.35 9.74 7.89 -89.70 -0.71 9.03 16 44 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.11 2.83 8.09 -2.39 -0.02 2.81 16 46 H 0.40 18.41 7.90 -92.70 -0.73 17.67 16 47 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 48 H 0.10 1.56 7.83 -2.39 -0.02 1.54 16 49 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.05 1.09 6.75 -2.39 -0.02 1.08 16 51 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 52 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -69.66 422.52 0.06 -69.60 By element: Atomic # 1 Polarization: 40.12 SS G_CDS: -0.53 Total: 39.60 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: 6.85 Total: 17.56 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -6.71 Total: -112.60 kcal Atomic # 8 Polarization: -56.80 SS G_CDS: -1.58 Total: -58.39 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -69.66 0.06 -69.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700834557.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.229 kcal (2) G-P(sol) polarization free energy of solvation -69.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds