Wall clock time and date at job start Wed Apr 1 2020 00:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46955 * 2 1 4 4 O 1.42899 * 109.47320 * 120.00368 * 2 1 3 5 5 C 1.42898 * 114.00229 * 90.00263 * 4 2 1 6 6 C 1.52994 * 109.47003 * 180.02562 * 5 4 2 7 7 C 1.50704 * 109.47167 * 179.97438 * 6 5 4 8 8 O 1.21285 * 119.99808 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00342 * 179.97438 * 7 6 5 10 10 C 1.47427 * 125.64801 * 0.02978 * 9 7 6 11 11 C 1.54903 * 104.83121 * 204.10691 * 10 9 7 12 12 H 1.08999 * 111.03823 * 81.07929 * 11 10 9 13 13 N 1.46901 * 111.00277 * 204.91661 * 11 10 9 14 14 C 1.46902 * 110.99844 * 267.19395 * 13 11 10 15 15 C 1.50702 * 109.47027 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34783 * 120.00004 * 180.02562 * 15 14 13 18 18 C 1.37092 * 119.99804 * 180.02562 * 17 15 14 19 19 H 1.08002 * 120.00499 * 0.02562 * 18 17 15 20 20 C 1.38956 * 119.99671 * 179.72159 * 18 17 15 21 21 N 1.31414 * 120.00152 * 0.27554 * 20 18 17 22 22 Si 1.86803 * 119.99914 * 180.27723 * 20 18 17 23 23 H 1.48496 * 109.47187 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 119.99961 * 22 20 18 25 25 H 1.48498 * 109.47018 * 240.00007 * 22 20 18 26 26 C 1.55154 * 101.58213 * 322.98835 * 11 10 9 27 27 C 1.47021 * 125.65153 * 180.02562 * 9 7 6 28 28 H 1.08997 * 110.01239 * 59.46974 * 27 9 7 29 29 C 1.53005 * 109.87831 * 298.38043 * 27 9 7 30 30 H 1.08994 * 109.47326 * 299.99607 * 1 2 3 31 31 H 1.09003 * 109.47167 * 60.00368 * 1 2 3 32 32 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47266 * 240.00128 * 2 1 3 34 34 H 1.09007 * 109.46858 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47234 * 299.99956 * 3 2 1 36 36 H 1.09002 * 109.46864 * 60.00409 * 3 2 1 37 37 H 1.09002 * 109.47323 * 59.99959 * 5 4 2 38 38 H 1.09008 * 109.46782 * 299.99948 * 5 4 2 39 39 H 1.08996 * 109.47667 * 59.99929 * 6 5 4 40 40 H 1.09000 * 109.47511 * 299.99618 * 6 5 4 41 41 H 1.08996 * 110.36510 * 85.26338 * 10 9 7 42 42 H 1.09008 * 110.36329 * 322.94272 * 10 9 7 43 43 H 1.00894 * 111.00401 * 143.24294 * 13 11 10 44 44 H 1.09004 * 109.47131 * 60.00016 * 14 13 11 45 45 H 1.08994 * 109.47471 * 299.99766 * 14 13 11 46 46 H 0.97000 * 119.99715 * 359.97438 * 17 15 14 47 47 H 0.96991 * 119.99827 * 179.97438 * 21 20 18 48 48 H 1.09005 * 110.71848 * 153.86835 * 26 11 10 49 49 H 1.08998 * 110.72075 * 276.96273 * 26 11 10 50 50 H 1.08996 * 109.46920 * 302.18913 * 29 27 9 51 51 H 1.09000 * 109.47121 * 62.19286 * 29 27 9 52 52 H 1.09002 * 109.47062 * 182.19472 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2002 -2.0782 0.9885 6 6 2.7080 -2.6927 2.2944 7 6 2.9118 -4.1740 2.1066 8 8 2.6747 -4.6876 1.0338 9 7 3.3586 -4.9279 3.1306 10 6 3.6850 -4.4359 4.4814 11 6 4.6899 -5.4696 5.0479 12 1 5.6974 -5.2793 4.6780 13 7 4.6642 -5.4786 6.5167 14 6 5.6779 -4.5686 7.0665 15 6 5.6212 -4.6041 8.5720 16 8 4.8159 -5.3177 9.1320 17 7 6.4653 -3.8429 9.2964 18 6 6.4140 -3.8757 10.6660 19 1 5.6975 -4.5117 11.1646 20 6 7.2882 -3.0953 11.4128 21 7 8.1603 -2.3218 10.8062 22 14 7.2235 -3.1457 13.2790 23 1 6.1610 -4.0883 13.7122 24 1 8.5347 -3.6001 13.8076 25 1 6.9230 -1.7883 13.8007 26 6 4.1282 -6.7971 4.4738 27 6 3.6010 -6.3773 3.0855 28 1 4.3436 -6.6077 2.3216 29 6 2.2952 -7.1140 2.7805 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 2.9320 -2.2467 0.1985 38 1 1.2538 -2.5434 0.7123 39 1 1.9758 -2.5243 3.0841 40 1 3.6542 -2.2276 2.5710 41 1 2.7878 -4.4008 5.0994 42 1 4.1464 -3.4499 4.4247 43 1 4.7858 -6.4140 6.8748 44 1 5.4817 -3.5540 6.7197 45 1 6.6669 -4.8818 6.7324 46 1 7.1095 -3.2725 8.8486 47 1 8.7702 -1.7768 11.3275 48 1 4.9193 -7.5407 4.3770 49 1 3.3192 -7.1757 5.0985 50 1 1.5521 -6.8650 3.5379 51 1 1.9288 -6.8128 1.7990 52 1 2.4745 -8.1892 2.7871 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700834558.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:47 Heat of formation + Delta-G solvation = -126.470961 kcal Electronic energy + Delta-G solvation = -29603.786360 eV Core-core repulsion = 25409.913997 eV Total energy + Delta-G solvation = -4193.872362 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.52673 -38.83742 -38.37704 -37.71906 -34.88652 -33.83203 -33.70241 -32.36671 -31.27861 -30.55387 -30.06465 -27.57849 -26.39295 -26.05930 -24.52212 -23.91988 -21.70538 -21.59787 -20.93493 -19.35006 -18.95141 -17.93723 -17.69896 -16.92609 -16.62633 -16.16520 -15.92567 -15.42974 -15.22208 -14.95315 -14.72680 -14.52054 -14.30034 -13.83735 -13.81732 -13.63992 -13.46166 -13.25236 -13.14386 -12.83675 -12.76219 -12.57237 -12.48508 -12.26117 -12.17328 -12.05909 -11.73989 -11.68022 -11.54320 -11.46964 -11.26300 -11.15670 -11.07315 -10.98002 -10.83216 -10.36603 -10.25405 -10.00435 -9.84794 -9.55387 -8.86113 -8.53862 -8.20672 -7.99982 -6.45014 -3.85896 2.42189 2.58267 3.14273 3.25311 3.32251 3.41156 3.85817 3.98403 4.17709 4.30321 4.39137 4.49944 4.59898 4.66737 4.76103 4.81350 4.82609 4.91158 4.99854 5.05391 5.16021 5.19274 5.20905 5.24882 5.26834 5.34421 5.44953 5.45730 5.48031 5.49692 5.54128 5.58971 5.62281 5.68002 5.69924 5.83808 5.85085 5.87849 5.88431 5.95068 6.06086 6.20056 6.22667 6.94385 7.09118 7.30180 7.51475 7.52577 7.94064 8.02789 8.57149 9.14568 9.50377 10.01263 10.72664 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010185 B = 0.002048 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.480666 B =13668.187937 C =15939.856940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.082 3.918 3 C -0.150 4.150 4 O -0.385 6.385 5 C 0.080 3.920 6 C -0.137 4.137 7 C 0.536 3.464 8 O -0.546 6.546 9 N -0.613 5.613 10 C 0.106 3.894 11 C 0.073 3.927 12 H 0.063 0.937 13 N -0.656 5.656 14 C 0.049 3.951 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.563 5.563 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C -0.133 4.133 27 C 0.139 3.861 28 H 0.076 0.924 29 C -0.162 4.162 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.356 0.644 44 H 0.087 0.913 45 H 0.046 0.954 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.082 0.918 49 H 0.091 0.909 50 H 0.058 0.942 51 H 0.068 0.932 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.022 0.640 -22.343 24.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.025 3.975 3 C -0.207 4.207 4 O -0.305 6.305 5 C 0.003 3.997 6 C -0.177 4.177 7 C 0.325 3.675 8 O -0.424 6.424 9 N -0.347 5.347 10 C -0.018 4.018 11 C -0.038 4.038 12 H 0.081 0.919 13 N -0.290 5.290 14 C -0.083 4.083 15 C 0.225 3.775 16 O -0.467 6.467 17 N -0.199 5.199 18 C -0.429 4.429 19 H 0.122 0.878 20 C -0.180 4.180 21 N -0.542 5.542 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.171 4.171 27 C 0.035 3.965 28 H 0.094 0.906 29 C -0.220 4.220 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.177 0.823 44 H 0.105 0.895 45 H 0.064 0.936 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.101 0.899 49 H 0.110 0.890 50 H 0.077 0.923 51 H 0.087 0.913 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.043 0.610 -22.279 24.445 hybrid contribution 1.281 -0.142 0.390 1.347 sum -8.761 0.468 -21.889 23.582 Atomic orbital electron populations 1.22309 0.95995 1.02447 1.02613 1.22070 0.93660 0.93749 0.88059 1.21871 1.01880 0.94437 1.02560 1.87872 1.86708 1.19990 1.35895 1.22125 1.00326 0.81048 0.96227 1.21470 1.04729 0.91583 0.99932 1.20023 0.76395 0.88343 0.82694 1.90690 1.51657 1.74513 1.25536 1.48536 1.65484 1.08666 1.12022 1.22447 0.99713 0.97774 0.81835 1.22632 0.97427 0.94716 0.89012 0.91918 1.59956 1.51231 1.14556 1.03246 1.21764 0.93248 0.98135 0.95180 1.19766 0.84822 0.85025 0.87870 1.90531 1.40104 1.43957 1.72140 1.41872 1.32290 1.38793 1.06979 1.19753 1.17962 1.24212 0.80952 0.87827 1.25277 0.95791 0.96133 1.00779 1.69616 1.20952 1.27084 1.36564 0.85796 0.78185 0.78152 0.82197 1.19201 1.20776 1.20715 1.22966 1.01844 0.97214 0.95067 1.21494 0.97567 0.79946 0.97453 0.90644 1.22135 0.96967 0.99992 1.02911 0.91662 0.91682 0.92431 0.92192 0.91934 0.91290 0.91660 0.92549 0.92572 0.87860 0.87934 0.89599 0.90478 0.82283 0.89519 0.93617 0.77452 0.91886 0.89939 0.89032 0.92253 0.91331 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 9.53 37.16 0.35 -0.90 16 2 C 0.08 0.66 3.34 -26.73 -0.09 0.57 16 3 C -0.15 -1.02 9.56 37.16 0.36 -0.67 16 4 O -0.38 -3.96 9.99 -35.23 -0.35 -4.31 16 5 C 0.08 0.79 5.04 37.15 0.19 0.98 16 6 C -0.14 -1.31 5.08 -27.88 -0.14 -1.45 16 7 C 0.54 6.23 7.64 -10.98 -0.08 6.15 16 8 O -0.55 -7.82 15.03 5.55 0.08 -7.73 16 9 N -0.61 -6.57 3.06 -163.02 -0.50 -7.07 16 10 C 0.11 1.11 6.39 -2.53 -0.02 1.09 16 11 C 0.07 0.79 3.38 -65.57 -0.22 0.57 16 12 H 0.06 0.66 7.83 -51.93 -0.41 0.25 16 13 N -0.66 -9.35 6.04 -105.73 -0.64 -9.99 16 14 C 0.05 0.79 6.03 -4.97 -0.03 0.76 16 15 C 0.44 9.90 7.82 -10.98 -0.09 9.82 16 16 O -0.58 -15.24 15.78 5.55 0.09 -15.15 16 17 N -0.56 -13.82 5.29 -10.96 -0.06 -13.88 16 18 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 19 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 20 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 21 N -0.90 -24.10 13.05 55.50 0.72 -23.38 16 22 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 C -0.13 -1.23 5.87 -24.90 -0.15 -1.37 16 27 C 0.14 1.39 3.46 -66.96 -0.23 1.15 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 29 C -0.16 -1.58 9.10 37.16 0.34 -1.24 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.43 7.87 -51.93 -0.41 0.02 16 33 H 0.06 0.44 7.79 -51.92 -0.40 0.04 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.57 8.04 -51.93 -0.42 0.15 16 38 H 0.06 0.57 7.83 -51.92 -0.41 0.16 16 39 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.10 0.89 7.85 -51.93 -0.41 0.48 16 41 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.08 0.73 7.48 -51.92 -0.39 0.35 16 43 H 0.36 5.25 8.14 -39.29 -0.32 4.93 16 44 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 45 H 0.05 0.66 8.09 -51.93 -0.42 0.24 16 46 H 0.39 9.19 7.90 -40.82 -0.32 8.87 16 47 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 48 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.09 0.89 7.86 -51.93 -0.41 0.48 16 50 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.07 0.79 6.90 -51.93 -0.36 0.43 16 52 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 423.26 15.07 6.38 6.38 Total: -1.00 -32.08 423.26 -8.60 -40.69 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -9.25 Total: 11.11 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -0.05 Total: 7.62 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.47 Total: -54.31 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.18 Total: -27.20 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -32.08 -8.60 -40.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700834558.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.786 kcal (2) G-P(sol) polarization free energy of solvation -32.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds