Wall clock time and date at job start Wed Apr 1 2020 00:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46955 * 2 1 4 4 O 1.42899 * 109.47320 * 120.00368 * 2 1 3 5 5 C 1.42898 * 114.00229 * 90.00263 * 4 2 1 6 6 C 1.52994 * 109.47003 * 180.02562 * 5 4 2 7 7 C 1.50704 * 109.47167 * 179.97438 * 6 5 4 8 8 O 1.21285 * 119.99808 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00342 * 179.97438 * 7 6 5 10 10 C 1.47427 * 125.64801 * 0.02978 * 9 7 6 11 11 C 1.54903 * 104.83121 * 204.10691 * 10 9 7 12 12 H 1.08999 * 111.03823 * 81.07929 * 11 10 9 13 13 N 1.46901 * 111.00277 * 204.91661 * 11 10 9 14 14 C 1.46902 * 110.99844 * 267.19395 * 13 11 10 15 15 C 1.50702 * 109.47027 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34783 * 120.00004 * 180.02562 * 15 14 13 18 18 C 1.37092 * 119.99804 * 180.02562 * 17 15 14 19 19 H 1.08002 * 120.00499 * 0.02562 * 18 17 15 20 20 C 1.38956 * 119.99671 * 179.72159 * 18 17 15 21 21 N 1.31414 * 120.00152 * 0.27554 * 20 18 17 22 22 Si 1.86803 * 119.99914 * 180.27723 * 20 18 17 23 23 H 1.48496 * 109.47187 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 119.99961 * 22 20 18 25 25 H 1.48498 * 109.47018 * 240.00007 * 22 20 18 26 26 C 1.55154 * 101.58213 * 322.98835 * 11 10 9 27 27 C 1.47021 * 125.65153 * 180.02562 * 9 7 6 28 28 H 1.08997 * 110.01239 * 59.46974 * 27 9 7 29 29 C 1.53005 * 109.87831 * 298.38043 * 27 9 7 30 30 H 1.08994 * 109.47326 * 299.99607 * 1 2 3 31 31 H 1.09003 * 109.47167 * 60.00368 * 1 2 3 32 32 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47266 * 240.00128 * 2 1 3 34 34 H 1.09007 * 109.46858 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47234 * 299.99956 * 3 2 1 36 36 H 1.09002 * 109.46864 * 60.00409 * 3 2 1 37 37 H 1.09002 * 109.47323 * 59.99959 * 5 4 2 38 38 H 1.09008 * 109.46782 * 299.99948 * 5 4 2 39 39 H 1.08996 * 109.47667 * 59.99929 * 6 5 4 40 40 H 1.09000 * 109.47511 * 299.99618 * 6 5 4 41 41 H 1.08996 * 110.36510 * 85.26338 * 10 9 7 42 42 H 1.09008 * 110.36329 * 322.94272 * 10 9 7 43 43 H 1.00894 * 111.00401 * 143.24294 * 13 11 10 44 44 H 1.09004 * 109.47131 * 60.00016 * 14 13 11 45 45 H 1.08994 * 109.47471 * 299.99766 * 14 13 11 46 46 H 0.97000 * 119.99715 * 359.97438 * 17 15 14 47 47 H 0.96991 * 119.99827 * 179.97438 * 21 20 18 48 48 H 1.09005 * 110.71848 * 153.86835 * 26 11 10 49 49 H 1.08998 * 110.72075 * 276.96273 * 26 11 10 50 50 H 1.08996 * 109.46920 * 302.18913 * 29 27 9 51 51 H 1.09000 * 109.47121 * 62.19286 * 29 27 9 52 52 H 1.09002 * 109.47062 * 182.19472 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2002 -2.0782 0.9885 6 6 2.7080 -2.6927 2.2944 7 6 2.9118 -4.1740 2.1066 8 8 2.6747 -4.6876 1.0338 9 7 3.3586 -4.9279 3.1306 10 6 3.6850 -4.4359 4.4814 11 6 4.6899 -5.4696 5.0479 12 1 5.6974 -5.2793 4.6780 13 7 4.6642 -5.4786 6.5167 14 6 5.6779 -4.5686 7.0665 15 6 5.6212 -4.6041 8.5720 16 8 4.8159 -5.3177 9.1320 17 7 6.4653 -3.8429 9.2964 18 6 6.4140 -3.8757 10.6660 19 1 5.6975 -4.5117 11.1646 20 6 7.2882 -3.0953 11.4128 21 7 8.1603 -2.3218 10.8062 22 14 7.2235 -3.1457 13.2790 23 1 6.1610 -4.0883 13.7122 24 1 8.5347 -3.6001 13.8076 25 1 6.9230 -1.7883 13.8007 26 6 4.1282 -6.7971 4.4738 27 6 3.6010 -6.3773 3.0855 28 1 4.3436 -6.6077 2.3216 29 6 2.2952 -7.1140 2.7805 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 2.9320 -2.2467 0.1985 38 1 1.2538 -2.5434 0.7123 39 1 1.9758 -2.5243 3.0841 40 1 3.6542 -2.2276 2.5710 41 1 2.7878 -4.4008 5.0994 42 1 4.1464 -3.4499 4.4247 43 1 4.7858 -6.4140 6.8748 44 1 5.4817 -3.5540 6.7197 45 1 6.6669 -4.8818 6.7324 46 1 7.1095 -3.2725 8.8486 47 1 8.7702 -1.7768 11.3275 48 1 4.9193 -7.5407 4.3770 49 1 3.3192 -7.1757 5.0985 50 1 1.5521 -6.8650 3.5379 51 1 1.9288 -6.8128 1.7990 52 1 2.4745 -8.1892 2.7871 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700834558.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:42 Heat of formation + Delta-G solvation = -149.026424 kcal Electronic energy + Delta-G solvation = -29604.764438 eV Core-core repulsion = 25409.913997 eV Total energy + Delta-G solvation = -4194.850440 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.41240 -40.14242 -39.48126 -38.75689 -36.24077 -35.57766 -34.40948 -33.25333 -33.14149 -31.32226 -31.12294 -28.12882 -27.93043 -26.87665 -25.86495 -25.07174 -22.53877 -22.26308 -21.81701 -21.04219 -19.94885 -19.77800 -18.52712 -17.84084 -17.72929 -17.29267 -16.88560 -16.72241 -16.28087 -16.20614 -15.90492 -15.68557 -15.47189 -15.20978 -14.82936 -14.62301 -14.46760 -14.29615 -13.91854 -13.86689 -13.62893 -13.49901 -13.38774 -13.32441 -13.17384 -13.08745 -12.91724 -12.77272 -12.75273 -12.42993 -12.38202 -12.15414 -12.10880 -12.06013 -11.96432 -11.69858 -11.61204 -11.49030 -10.93771 -10.57036 -10.31408 -9.98835 -9.74595 -9.37326 -8.44913 -5.93004 1.38058 1.43751 1.52332 1.57357 1.75677 2.08566 2.30520 2.65356 2.95489 3.23023 3.35260 3.53630 3.61224 3.76342 3.91495 3.96407 4.04383 4.11324 4.16114 4.19072 4.28879 4.31467 4.34928 4.39543 4.43706 4.52863 4.60737 4.64475 4.70949 4.72079 4.75386 4.77390 4.82933 4.90472 4.91750 4.94023 4.96868 4.99258 5.13034 5.26550 5.28004 5.32754 5.38408 5.43749 5.90921 6.11486 6.24612 6.36934 6.44870 6.62531 7.05016 7.15416 7.59658 8.14748 8.72572 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010185 B = 0.002048 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.480666 B =13668.187937 C =15939.856940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.072 3.928 3 C -0.148 4.148 4 O -0.399 6.399 5 C 0.084 3.916 6 C -0.132 4.132 7 C 0.534 3.466 8 O -0.577 6.577 9 N -0.611 5.611 10 C 0.107 3.893 11 C 0.076 3.924 12 H 0.076 0.924 13 N -0.667 5.667 14 C 0.065 3.935 15 C 0.438 3.562 16 O -0.623 6.623 17 N -0.574 5.574 18 C -0.331 4.331 19 H 0.079 0.921 20 C -0.014 4.014 21 N -0.920 5.920 22 Si 0.991 3.009 23 H -0.273 1.273 24 H -0.272 1.272 25 H -0.272 1.272 26 C -0.123 4.123 27 C 0.135 3.865 28 H 0.077 0.923 29 C -0.156 4.156 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.353 0.647 44 H 0.107 0.893 45 H 0.070 0.930 46 H 0.397 0.603 47 H 0.277 0.723 48 H 0.101 0.899 49 H 0.087 0.913 50 H 0.053 0.947 51 H 0.048 0.952 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.502 1.052 -22.910 24.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.015 3.985 3 C -0.205 4.205 4 O -0.320 6.320 5 C 0.007 3.993 6 C -0.171 4.171 7 C 0.324 3.676 8 O -0.457 6.457 9 N -0.344 5.344 10 C -0.016 4.016 11 C -0.034 4.034 12 H 0.094 0.906 13 N -0.300 5.300 14 C -0.068 4.068 15 C 0.226 3.774 16 O -0.509 6.509 17 N -0.212 5.212 18 C -0.461 4.461 19 H 0.097 0.903 20 C -0.214 4.214 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.197 1.197 25 H -0.198 1.198 26 C -0.161 4.161 27 C 0.032 3.968 28 H 0.095 0.905 29 C -0.214 4.214 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.128 0.872 40 H 0.133 0.867 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.173 0.827 44 H 0.125 0.875 45 H 0.088 0.912 46 H 0.231 0.769 47 H 0.086 0.914 48 H 0.119 0.881 49 H 0.106 0.894 50 H 0.073 0.927 51 H 0.067 0.933 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.511 1.034 -22.862 24.783 hybrid contribution 1.068 -0.301 0.501 1.218 sum -8.442 0.733 -22.361 23.913 Atomic orbital electron populations 1.22291 0.95344 1.02210 1.03250 1.22308 0.94300 0.94304 0.87590 1.21879 1.01668 0.93672 1.03264 1.87850 1.86944 1.20003 1.37169 1.22038 0.99843 0.81100 0.96304 1.21447 1.05517 0.90207 0.99950 1.20343 0.75842 0.89076 0.82319 1.90677 1.53084 1.75214 1.26760 1.48574 1.64892 1.09036 1.11906 1.22436 0.99371 0.98410 0.81388 1.22654 0.98247 0.95732 0.86799 0.90574 1.59911 1.50753 1.14071 1.05315 1.21623 0.95188 0.99894 0.90054 1.20900 0.82940 0.82989 0.90562 1.90503 1.41365 1.45177 1.73866 1.41944 1.33170 1.39690 1.06358 1.19686 1.18586 1.25145 0.82640 0.90307 1.26015 0.95119 0.95420 1.04805 1.69670 1.21166 1.27247 1.38036 0.84895 0.78225 0.78247 0.77133 1.19799 1.19711 1.19756 1.22918 1.02180 0.96863 0.94108 1.21595 0.97660 0.79618 0.97938 0.90530 1.22071 0.96702 1.01122 1.01496 0.92169 0.89889 0.93099 0.91684 0.92261 0.89340 0.92197 0.92962 0.93289 0.87176 0.86693 0.90549 0.89154 0.82660 0.87540 0.91169 0.76945 0.91370 0.88056 0.89415 0.92749 0.93275 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 9.53 71.98 0.69 -1.63 16 2 C 0.07 1.11 3.34 30.59 0.10 1.21 16 3 C -0.15 -1.84 9.56 71.98 0.69 -1.15 16 4 O -0.40 -7.99 9.99 -148.98 -1.49 -9.48 16 5 C 0.08 1.64 5.04 71.98 0.36 2.00 16 6 C -0.13 -2.39 5.08 29.85 0.15 -2.23 16 7 C 0.53 12.00 7.64 87.66 0.67 12.67 16 8 O -0.58 -16.46 15.03 -3.05 -0.05 -16.51 16 9 N -0.61 -12.24 3.06 -788.06 -2.42 -14.65 16 10 C 0.11 2.03 6.39 86.85 0.55 2.58 16 11 C 0.08 1.46 3.38 46.30 0.16 1.61 16 12 H 0.08 1.32 7.83 -2.39 -0.02 1.30 16 13 N -0.67 -17.75 6.04 -488.41 -2.95 -20.70 16 14 C 0.06 1.95 6.03 85.56 0.52 2.46 16 15 C 0.44 19.60 7.82 87.66 0.69 20.29 16 16 O -0.62 -32.89 15.78 -3.07 -0.05 -32.94 16 17 N -0.57 -28.29 5.29 -306.97 -1.62 -29.91 16 18 C -0.33 -18.34 9.68 84.04 0.81 -17.53 16 19 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 20 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 21 N -0.92 -48.70 13.05 21.67 0.28 -48.41 16 22 Si 0.99 42.27 29.55 68.60 2.03 44.29 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 24 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 26 C -0.12 -1.99 5.87 31.78 0.19 -1.81 16 27 C 0.14 2.49 3.46 45.34 0.16 2.64 16 28 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 29 C -0.16 -2.90 9.10 71.98 0.65 -2.24 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 0.74 7.87 -2.38 -0.02 0.72 16 33 H 0.07 0.92 7.79 -2.38 -0.02 0.90 16 34 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 37 H 0.05 1.04 8.04 -2.39 -0.02 1.02 16 38 H 0.05 1.01 7.83 -2.38 -0.02 0.99 16 39 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.11 1.80 7.85 -2.39 -0.02 1.78 16 41 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.09 1.48 7.48 -2.38 -0.02 1.46 16 43 H 0.35 9.89 8.14 -89.70 -0.73 9.16 16 44 H 0.11 2.84 8.14 -2.38 -0.02 2.82 16 45 H 0.07 1.82 8.09 -2.39 -0.02 1.80 16 46 H 0.40 18.49 7.90 -92.71 -0.73 17.76 16 47 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 48 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 49 H 0.09 1.54 7.86 -2.39 -0.02 1.52 16 50 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.05 1.12 6.90 -2.39 -0.02 1.10 16 52 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -69.55 423.26 0.04 -69.51 By element: Atomic # 1 Polarization: 40.74 SS G_CDS: -0.55 Total: 40.19 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: 6.85 Total: 18.61 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -6.70 Total: -113.67 kcal Atomic # 8 Polarization: -57.35 SS G_CDS: -1.58 Total: -58.93 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -69.55 0.04 -69.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700834558.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.516 kcal (2) G-P(sol) polarization free energy of solvation -69.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds