Wall clock time and date at job start Wed Apr 1 2020 00:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.46957 * 2 1 4 4 O 1.42896 * 109.47078 * 120.00142 * 2 1 3 5 5 C 1.42902 * 114.00027 * 150.00301 * 4 2 1 6 6 C 1.52994 * 109.47179 * 180.02562 * 5 4 2 7 7 C 1.50704 * 109.47165 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00162 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99729 * 180.02562 * 7 6 5 10 10 C 1.47419 * 125.65139 * 0.02562 * 9 7 6 11 11 C 1.54905 * 104.92834 * 155.80015 * 10 9 7 12 12 H 1.09004 * 111.00578 * 278.99532 * 11 10 9 13 13 N 1.46893 * 111.00856 * 155.14004 * 11 10 9 14 14 C 1.46903 * 111.00140 * 86.45482 * 13 11 10 15 15 C 1.50701 * 109.47525 * 180.02562 * 14 13 11 16 16 O 1.21300 * 119.99531 * 0.02562 * 15 14 13 17 17 N 1.34768 * 120.00323 * 179.97438 * 15 14 13 18 18 C 1.37094 * 120.00257 * 179.97438 * 17 15 14 19 19 H 1.08000 * 119.99997 * 0.02562 * 18 17 15 20 20 C 1.38957 * 120.00069 * 180.02562 * 18 17 15 21 21 N 1.31407 * 119.99932 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99685 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47642 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47098 * 120.00290 * 22 20 18 25 25 H 1.48497 * 109.47124 * 239.99740 * 22 20 18 26 26 C 1.55448 * 101.45165 * 37.00468 * 11 10 9 27 27 C 1.47026 * 125.64285 * 180.02562 * 9 7 6 28 28 H 1.08998 * 109.88350 * 300.64712 * 27 9 7 29 29 C 1.52998 * 109.88558 * 61.65953 * 27 9 7 30 30 H 1.09000 * 109.47465 * 299.99793 * 1 2 3 31 31 H 1.09007 * 109.47403 * 59.99883 * 1 2 3 32 32 H 1.09002 * 109.47600 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47465 * 240.00207 * 2 1 3 34 34 H 1.08994 * 109.47044 * 60.00262 * 3 2 1 35 35 H 1.08998 * 109.46598 * 180.02562 * 3 2 1 36 36 H 1.08995 * 109.47155 * 299.99866 * 3 2 1 37 37 H 1.09004 * 109.47327 * 59.99687 * 5 4 2 38 38 H 1.09007 * 109.47132 * 300.00037 * 5 4 2 39 39 H 1.08998 * 109.47591 * 59.99952 * 6 5 4 40 40 H 1.09005 * 109.47141 * 299.99443 * 6 5 4 41 41 H 1.09002 * 110.36926 * 274.69484 * 10 9 7 42 42 H 1.08995 * 110.36556 * 36.90768 * 10 9 7 43 43 H 1.00908 * 110.99883 * 322.50324 * 13 11 10 44 44 H 1.09006 * 109.46587 * 299.99946 * 14 13 11 45 45 H 1.08990 * 109.47175 * 60.00129 * 14 13 11 46 46 H 0.97001 * 119.99693 * 0.02562 * 17 15 14 47 47 H 0.96996 * 119.99644 * 179.97438 * 21 20 18 48 48 H 1.08998 * 110.70855 * 206.14575 * 26 11 10 49 49 H 1.08997 * 110.70436 * 82.89324 * 26 11 10 50 50 H 1.09004 * 109.47335 * 58.54118 * 29 27 9 51 51 H 1.08999 * 109.47333 * 178.54386 * 29 27 9 52 52 H 1.09006 * 109.47162 * 298.54679 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0062 -0.6737 1.1667 5 6 3.2659 -1.3245 0.9886 6 6 3.6754 -2.0091 2.2941 7 6 5.0035 -2.6960 2.1060 8 8 5.5669 -2.6435 1.0333 9 7 5.5648 -3.3695 3.1297 10 6 4.9913 -3.5145 4.4800 11 6 5.6274 -4.8081 5.0470 12 1 5.1111 -5.6930 4.6747 13 7 5.6414 -4.7881 6.5157 14 6 4.3778 -5.3016 7.0613 15 6 4.4290 -5.2653 8.5670 16 8 5.4206 -4.8518 9.1302 17 7 3.3729 -5.6913 9.2877 18 6 3.4197 -5.6587 10.6574 19 1 4.3028 -5.2914 11.1590 20 6 2.3309 -6.0984 11.4005 21 7 1.2562 -6.5449 10.7902 22 14 2.3946 -6.0533 13.2669 23 1 3.7053 -5.5098 13.7046 24 1 1.3036 -5.1854 13.7785 25 1 2.2249 -7.4284 13.8013 26 6 7.0690 -4.7208 4.4719 27 6 6.8505 -4.0813 3.0846 28 1 6.8189 -4.8555 2.3179 29 6 7.9807 -3.0955 2.7820 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 4.0199 -0.5873 0.7124 38 1 3.1809 -2.0706 0.1985 39 1 2.9214 -2.7464 2.5698 40 1 3.7604 -1.2632 3.0844 41 1 5.2575 -2.6579 5.0993 42 1 3.9078 -3.6181 4.4228 43 1 5.8348 -3.8606 6.8629 44 1 3.5524 -4.6817 6.7111 45 1 4.2283 -6.3282 6.7272 46 1 2.5798 -6.0215 8.8372 47 1 0.4964 -6.8521 11.3090 48 1 7.5058 -5.7147 4.3741 49 1 7.6949 -4.0831 5.0961 50 1 8.0015 -2.3202 3.5479 51 1 8.9332 -3.6255 2.7756 52 1 7.8128 -2.6384 1.8068 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700834559.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:00 Heat of formation + Delta-G solvation = -126.931674 kcal Electronic energy + Delta-G solvation = -29657.593992 eV Core-core repulsion = 25463.701652 eV Total energy + Delta-G solvation = -4193.892340 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.58375 -38.87925 -38.40102 -37.74427 -34.89855 -33.84017 -33.73469 -32.39478 -31.28447 -30.58075 -30.03841 -27.60300 -26.41323 -25.98240 -24.54393 -23.92587 -21.80917 -21.66618 -20.98279 -19.34732 -19.08110 -17.96984 -17.73897 -16.92923 -16.63247 -16.11200 -16.07555 -15.45315 -15.26803 -14.85794 -14.66854 -14.55978 -14.31887 -13.87343 -13.83139 -13.71542 -13.48388 -13.19689 -12.99226 -12.84257 -12.75557 -12.60051 -12.54643 -12.27914 -12.23365 -12.10771 -11.80065 -11.73036 -11.55141 -11.50728 -11.41548 -11.11425 -11.07278 -11.01127 -10.84340 -10.36744 -10.25674 -10.06018 -9.88235 -9.55678 -8.93200 -8.54420 -8.17792 -8.00278 -6.45341 -3.86197 2.37208 2.53835 3.14109 3.25215 3.32117 3.37544 3.85352 3.95859 4.18222 4.29319 4.43380 4.47587 4.57939 4.64437 4.71660 4.77934 4.84239 4.86916 4.92065 5.04359 5.10689 5.12871 5.18797 5.21991 5.22612 5.30088 5.37629 5.42015 5.44243 5.46742 5.49045 5.54385 5.56026 5.69817 5.76379 5.81309 5.83561 5.85338 5.90016 5.94213 6.07975 6.18930 6.21592 6.90922 7.06894 7.24485 7.49989 7.52326 7.89363 8.02462 8.56744 9.14273 9.49978 10.00847 10.72332 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009828 B = 0.002100 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.342856 B =13330.985116 C =15721.215541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.082 3.918 3 C -0.176 4.176 4 O -0.385 6.385 5 C 0.080 3.920 6 C -0.138 4.138 7 C 0.535 3.465 8 O -0.544 6.544 9 N -0.610 5.610 10 C 0.064 3.936 11 C 0.079 3.921 12 H 0.096 0.904 13 N -0.651 5.651 14 C 0.048 3.952 15 C 0.439 3.561 16 O -0.583 6.583 17 N -0.562 5.562 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C -0.117 4.117 27 C 0.134 3.866 28 H 0.077 0.923 29 C -0.162 4.162 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.353 0.647 44 H 0.046 0.954 45 H 0.088 0.912 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.087 0.913 49 H 0.085 0.915 50 H 0.056 0.944 51 H 0.066 0.934 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.898 9.521 -22.365 24.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.025 3.975 3 C -0.234 4.234 4 O -0.305 6.305 5 C 0.003 3.997 6 C -0.177 4.177 7 C 0.324 3.676 8 O -0.421 6.421 9 N -0.344 5.344 10 C -0.062 4.062 11 C -0.033 4.033 12 H 0.114 0.886 13 N -0.283 5.283 14 C -0.084 4.084 15 C 0.225 3.775 16 O -0.468 6.468 17 N -0.199 5.199 18 C -0.429 4.429 19 H 0.122 0.878 20 C -0.180 4.180 21 N -0.542 5.542 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.155 4.155 27 C 0.031 3.969 28 H 0.095 0.905 29 C -0.220 4.220 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.174 0.826 44 H 0.064 0.936 45 H 0.106 0.894 46 H 0.226 0.774 47 H 0.081 0.919 48 H 0.106 0.894 49 H 0.103 0.897 50 H 0.075 0.925 51 H 0.085 0.915 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.876 9.192 -22.275 24.268 hybrid contribution -1.127 0.521 0.355 1.291 sum 1.749 9.713 -21.920 24.040 Atomic orbital electron populations 1.21871 0.93488 1.02817 1.02577 1.22073 0.95005 0.92417 0.88038 1.22309 1.01644 0.96780 1.02631 1.87870 1.36561 1.70122 1.35945 1.22122 0.85529 0.95890 0.96188 1.21472 0.94990 1.01316 0.99957 1.20049 0.86521 0.78222 0.82798 1.90693 1.64550 1.61395 1.25496 1.48482 1.21867 1.52479 1.11575 1.23332 0.99379 0.99989 0.83476 1.22854 0.95869 0.96101 0.88503 0.88613 1.60119 1.33354 1.31372 1.03436 1.21747 0.90401 1.01055 0.95214 1.19765 0.84950 0.84924 0.87905 1.90535 1.32694 1.51570 1.71968 1.41865 1.15059 1.55958 1.07002 1.19754 1.02224 1.39955 0.80964 0.87826 1.25274 0.95026 0.96882 1.00780 1.69614 1.05138 1.42872 1.36572 0.85797 0.78472 0.77871 0.82193 1.19198 1.20753 1.20729 1.22802 0.97088 1.02075 0.93582 1.21642 0.83019 0.94041 0.98220 0.90517 1.22133 0.97643 0.99467 1.02741 0.91669 0.91259 0.91922 0.92163 0.91676 0.92442 0.91646 0.92554 0.92497 0.87977 0.88033 0.90836 0.90285 0.82623 0.93623 0.89370 0.77445 0.91879 0.89432 0.89660 0.92457 0.91523 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.56 37.15 0.36 -0.65 16 2 C 0.08 0.65 3.34 -26.73 -0.09 0.56 16 3 C -0.18 -1.23 9.53 37.16 0.35 -0.87 16 4 O -0.39 -3.91 9.99 -35.23 -0.35 -4.26 16 5 C 0.08 0.78 5.04 37.15 0.19 0.96 16 6 C -0.14 -1.28 5.08 -27.88 -0.14 -1.42 16 7 C 0.54 6.08 7.64 -10.98 -0.08 6.00 16 8 O -0.54 -7.70 15.02 5.56 0.08 -7.61 16 9 N -0.61 -6.30 3.06 -163.02 -0.50 -6.80 16 10 C 0.06 0.61 6.27 -2.53 -0.02 0.59 16 11 C 0.08 0.83 3.33 -65.41 -0.22 0.62 16 12 H 0.10 0.98 7.92 -51.93 -0.41 0.57 16 13 N -0.65 -9.23 6.01 -105.56 -0.63 -9.87 16 14 C 0.05 0.77 6.04 -4.97 -0.03 0.74 16 15 C 0.44 9.86 7.82 -10.99 -0.09 9.78 16 16 O -0.58 -15.25 15.78 5.54 0.09 -15.16 16 17 N -0.56 -13.77 5.29 -10.96 -0.06 -13.83 16 18 C -0.30 -8.17 9.68 -14.93 -0.14 -8.31 16 19 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.06 13.05 55.50 0.72 -23.33 16 22 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 C -0.12 -1.12 6.19 -24.74 -0.15 -1.28 16 27 C 0.13 1.32 3.46 -66.95 -0.23 1.09 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 C -0.16 -1.56 9.10 37.16 0.34 -1.23 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.35 8.14 -51.92 -0.42 -0.08 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.44 7.79 -51.93 -0.40 0.04 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.42 7.87 -51.93 -0.41 0.01 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.56 7.83 -51.93 -0.41 0.16 16 38 H 0.06 0.56 8.04 -51.93 -0.42 0.15 16 39 H 0.10 0.86 7.84 -51.93 -0.41 0.45 16 40 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.70 7.80 -51.93 -0.41 0.30 16 42 H 0.08 0.68 7.47 -51.93 -0.39 0.30 16 43 H 0.35 5.18 8.00 -39.29 -0.31 4.86 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.09 1.30 8.09 -51.93 -0.42 0.88 16 46 H 0.39 9.16 7.90 -40.82 -0.32 8.83 16 47 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 48 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 49 H 0.08 0.85 7.85 -51.93 -0.41 0.45 16 50 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 51 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 52 H 0.07 0.77 6.89 -51.93 -0.36 0.41 16 LS Contribution 422.97 15.07 6.37 6.37 Total: -1.00 -32.17 422.97 -8.59 -40.76 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -9.23 Total: 10.98 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -0.06 Total: 7.06 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.47 Total: -53.83 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.18 Total: -27.03 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -32.17 -8.59 -40.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700834559.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.173 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds