Wall clock time and date at job start Wed Apr 1 2020 00:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50704 * 109.46995 * 2 1 4 4 O 1.21280 * 119.99855 * 359.97438 * 3 2 1 5 5 N 1.34771 * 119.99571 * 179.97438 * 3 2 1 6 6 C 1.47018 * 125.65413 * 359.95533 * 5 3 2 7 7 C 1.54319 * 107.27656 * 181.09541 * 6 5 3 8 8 C 1.55159 * 102.94205 * 22.19578 * 7 6 5 9 9 H 1.08993 * 111.04078 * 82.58126 * 8 7 6 10 10 C 1.50699 * 111.00656 * 206.42927 * 8 7 6 11 11 O 1.21280 * 120.00741 * 112.19649 * 10 8 7 12 12 N 1.34783 * 119.99356 * 292.19256 * 10 8 7 13 13 C 1.46502 * 119.99897 * 180.02562 * 12 10 8 14 14 C 1.52991 * 109.47222 * 179.97438 * 13 12 10 15 15 N 1.46503 * 109.47347 * 182.44870 * 14 13 12 16 16 C 1.36937 * 119.99834 * 96.30996 * 15 14 13 17 17 H 1.08003 * 119.99353 * 173.92732 * 16 15 14 18 18 C 1.38807 * 120.00520 * 353.92629 * 16 15 14 19 19 N 1.31618 * 119.99808 * 324.35261 * 18 16 15 20 20 Si 1.86798 * 120.00362 * 144.34524 * 18 16 15 21 21 H 1.48503 * 109.46896 * 94.98424 * 20 18 16 22 22 H 1.48494 * 109.47192 * 214.98815 * 20 18 16 23 23 H 1.48502 * 109.47057 * 334.98770 * 20 18 16 24 24 C 1.46503 * 119.99799 * 276.31251 * 15 14 13 25 25 C 1.52995 * 109.47209 * 268.24505 * 24 15 14 26 26 O 1.42904 * 109.47098 * 66.48022 * 25 24 15 27 27 C 1.42903 * 114.00097 * 179.97438 * 26 25 24 28 28 C 1.47428 * 125.64435 * 180.02562 * 5 3 2 29 29 H 1.09000 * 109.46898 * 59.99986 * 1 2 3 30 30 H 1.09001 * 109.47312 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47208 * 300.00112 * 1 2 3 32 32 H 1.09002 * 109.47208 * 239.99888 * 2 1 3 33 33 H 1.09000 * 109.46898 * 120.00014 * 2 1 3 34 34 H 1.08998 * 109.88204 * 300.51637 * 6 5 3 35 35 H 1.09007 * 109.88042 * 61.67722 * 6 5 3 36 36 H 1.09003 * 110.72037 * 263.83588 * 7 6 5 37 37 H 1.09000 * 110.72147 * 140.55373 * 7 6 5 38 38 H 0.96997 * 119.99968 * 359.97438 * 12 10 8 39 39 H 1.09008 * 109.46779 * 59.99567 * 13 12 10 40 40 H 1.09003 * 109.46674 * 300.00259 * 13 12 10 41 41 H 1.09000 * 109.47499 * 62.44508 * 14 13 12 42 42 H 1.09007 * 109.47325 * 302.44624 * 14 13 12 43 43 H 0.97002 * 120.00069 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.46851 * 148.24618 * 24 15 14 45 45 H 1.08997 * 109.46955 * 28.24895 * 24 15 14 46 46 H 1.08992 * 109.47325 * 186.47622 * 25 24 15 47 47 H 1.09002 * 109.47452 * 306.48548 * 25 24 15 48 48 H 1.09000 * 109.46626 * 299.99622 * 27 26 25 49 49 H 1.08993 * 109.47022 * 59.99942 * 27 26 25 50 50 H 1.08998 * 109.46836 * 180.02562 * 27 26 25 51 51 H 1.08991 * 110.37192 * 36.99346 * 28 5 3 52 52 H 1.09008 * 110.36358 * 274.67130 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.4181 0.6491 0.0021 7 6 5.7689 1.3948 0.0303 8 6 5.3884 2.7811 0.6143 9 1 5.3384 2.7469 1.7025 10 6 6.3520 3.8442 0.1537 11 8 5.9772 4.7170 -0.6004 12 7 7.6305 3.8252 0.5800 13 6 8.5673 4.8590 0.1328 14 6 9.9406 4.6081 0.7587 15 7 10.8620 5.6744 0.3583 16 6 11.0715 6.7449 1.1861 17 1 11.8221 7.4807 0.9378 18 6 10.3192 6.8844 2.3443 19 7 9.0553 6.5173 2.3562 20 14 11.1006 7.5928 3.8860 21 1 10.8261 9.0506 3.9550 22 1 10.5293 6.9242 5.0826 23 1 12.5678 7.3667 3.8460 24 6 11.5591 5.5954 -0.9278 25 6 12.9100 4.9038 -0.7340 26 8 12.6982 3.5387 -0.3685 27 6 13.9030 2.7982 -0.1630 28 6 3.9832 3.0019 0.0011 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.3247 0.0177 0.8856 35 1 4.3494 0.0407 -0.8998 36 1 6.1734 1.4984 -0.9766 37 1 6.4781 0.8837 0.6814 38 1 7.9302 3.1274 1.1835 39 1 8.2014 5.8386 0.4408 40 1 8.6513 4.8277 -0.9535 41 1 10.3258 3.6475 0.4165 42 1 9.8483 4.5965 1.8448 43 1 8.5294 6.6152 3.1655 44 1 11.7183 6.6010 -1.3171 45 1 10.9562 5.0239 -1.6334 46 1 13.4771 4.9471 -1.6638 47 1 13.4670 5.4089 0.0551 48 1 14.4902 2.7979 -1.0813 49 1 14.4809 3.2596 0.6377 50 1 13.6567 1.7723 0.1107 51 1 3.4052 3.6917 0.6159 52 1 4.0692 3.3810 -1.0173 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701003078.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:10 Heat of formation + Delta-G solvation = -91.722550 kcal Electronic energy + Delta-G solvation = -30438.536434 eV Core-core repulsion = 26246.170876 eV Total energy + Delta-G solvation = -4192.365558 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.41989 -39.09489 -37.58118 -37.11761 -35.83863 -33.79160 -33.12713 -31.80730 -31.65127 -29.42537 -29.10793 -27.54689 -25.84559 -25.46657 -23.83211 -22.92451 -22.51850 -21.54790 -20.18460 -19.59202 -19.28258 -17.53298 -17.30837 -16.71670 -15.93418 -15.74100 -15.61899 -15.42532 -15.11682 -14.92153 -14.79766 -14.45606 -14.36373 -13.73426 -13.71170 -13.43474 -13.38284 -13.06612 -12.95829 -12.53257 -12.41487 -12.38508 -12.10748 -11.94340 -11.79269 -11.55072 -11.52585 -11.43900 -11.28701 -11.24115 -11.00676 -10.72862 -10.66659 -10.50947 -10.19734 -9.97315 -9.86509 -9.79053 -9.33035 -9.14326 -8.78150 -8.38718 -8.14301 -7.02180 -5.91503 -3.07328 2.50224 2.76870 3.10232 3.36514 3.47302 3.50412 3.78689 4.17463 4.33023 4.33865 4.50392 4.58061 4.69179 4.80702 4.85652 5.07872 5.12647 5.18272 5.21187 5.32754 5.35347 5.45678 5.51776 5.53866 5.59274 5.61940 5.65651 5.76411 5.85480 5.88091 5.94532 5.94882 6.01195 6.06086 6.09206 6.14146 6.38532 6.44897 6.53632 6.76674 6.83374 7.15638 7.34919 7.46098 7.60129 7.70258 7.88195 8.02746 8.15926 8.23719 8.80970 9.13300 9.79944 10.26586 11.14707 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013619 B = 0.002361 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.467182 B =11858.432394 C =13130.742819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.524 3.476 4 O -0.540 6.540 5 N -0.622 5.622 6 C 0.102 3.898 7 C -0.121 4.121 8 C -0.125 4.125 9 H 0.108 0.892 10 C 0.518 3.482 11 O -0.547 6.547 12 N -0.706 5.706 13 C 0.105 3.895 14 C 0.167 3.833 15 N -0.584 5.584 16 C -0.266 4.266 17 H 0.075 0.925 18 C 0.011 3.989 19 N -0.875 5.875 20 Si 0.876 3.124 21 H -0.291 1.291 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.150 3.850 25 C 0.042 3.958 26 O -0.380 6.380 27 C 0.033 3.967 28 C 0.125 3.875 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.391 0.609 39 H 0.107 0.893 40 H 0.029 0.971 41 H 0.027 0.973 42 H 0.079 0.921 43 H 0.254 0.746 44 H 0.063 0.937 45 H 0.047 0.953 46 H 0.030 0.970 47 H 0.049 0.951 48 H 0.030 0.970 49 H 0.035 0.965 50 H 0.076 0.924 51 H 0.083 0.917 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.445 -17.650 -4.014 18.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C 0.313 3.687 4 O -0.417 6.417 5 N -0.357 5.357 6 C -0.021 4.021 7 C -0.159 4.159 8 C -0.148 4.148 9 H 0.126 0.874 10 C 0.302 3.698 11 O -0.425 6.425 12 N -0.354 5.354 13 C -0.019 4.019 14 C 0.040 3.960 15 N -0.304 5.304 16 C -0.394 4.394 17 H 0.093 0.907 18 C -0.188 4.188 19 N -0.519 5.519 20 Si 0.705 3.295 21 H -0.218 1.218 22 H -0.216 1.216 23 H -0.208 1.208 24 C 0.022 3.978 25 C -0.037 4.037 26 O -0.298 6.298 27 C -0.064 4.064 28 C 0.003 3.997 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.224 0.776 39 H 0.125 0.875 40 H 0.047 0.953 41 H 0.045 0.955 42 H 0.097 0.903 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.048 0.952 47 H 0.067 0.933 48 H 0.048 0.952 49 H 0.053 0.947 50 H 0.094 0.906 51 H 0.101 0.899 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.506 -16.572 -4.421 18.014 hybrid contribution 1.076 0.121 1.261 1.662 sum -4.431 -16.451 -3.160 17.328 Atomic orbital electron populations 1.21543 0.93005 1.01514 1.03462 1.21614 0.98521 0.93559 1.04184 1.20467 0.80276 0.91947 0.75960 1.90723 1.54269 1.46794 1.49865 1.48593 1.05200 1.08330 1.73625 1.22061 0.86764 0.91343 1.01937 1.22638 0.96379 0.93919 1.02940 1.22476 0.95017 0.94999 1.02265 0.87431 1.19896 0.82861 0.85634 0.81420 1.90696 1.77358 1.37825 1.36587 1.45969 1.09941 1.30893 1.48594 1.22500 0.90438 0.92906 0.96072 1.20795 0.86464 0.88490 1.00237 1.43914 1.47806 1.21867 1.16835 1.19122 1.16227 1.03407 1.00647 0.90664 1.24577 0.94756 1.00166 0.99338 1.70238 1.04180 1.50482 1.26963 0.86678 0.79791 0.78265 0.84794 1.21800 1.21643 1.20792 1.20805 0.90778 0.97570 0.88599 1.23482 1.00981 0.82107 0.97139 1.87939 1.28792 1.23003 1.90086 1.22624 0.88447 0.96506 0.98826 1.22022 0.90876 0.84225 1.02609 0.91949 0.92081 0.91946 0.89029 0.89005 0.90978 0.91019 0.89775 0.88964 0.77648 0.87492 0.95286 0.95475 0.90259 0.93616 0.91885 0.93506 0.95172 0.93292 0.95172 0.94651 0.90589 0.89896 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.20 37.16 0.34 -0.76 16 2 C -0.14 -1.08 5.61 -27.88 -0.16 -1.23 16 3 C 0.52 6.46 7.85 -10.99 -0.09 6.38 16 4 O -0.54 -8.99 16.24 5.56 0.09 -8.90 16 5 N -0.62 -7.12 3.33 -170.53 -0.57 -7.69 16 6 C 0.10 0.78 6.49 -3.07 -0.02 0.76 16 7 C -0.12 -1.05 6.41 -24.90 -0.16 -1.21 16 8 C -0.13 -1.55 3.43 -89.63 -0.31 -1.86 16 9 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 10 C 0.52 8.93 7.15 -10.98 -0.08 8.85 16 11 O -0.55 -11.92 15.72 5.56 0.09 -11.83 16 12 N -0.71 -12.21 5.56 -60.29 -0.33 -12.54 16 13 C 0.11 2.27 5.54 -4.05 -0.02 2.25 16 14 C 0.17 3.65 4.89 -4.04 -0.02 3.63 16 15 N -0.58 -13.50 2.50 -173.24 -0.43 -13.93 16 16 C -0.27 -6.83 9.62 -15.06 -0.14 -6.97 16 17 H 0.08 1.91 8.03 -52.48 -0.42 1.49 16 18 C 0.01 0.28 4.61 -17.43 -0.08 0.20 16 19 N -0.88 -23.30 9.31 55.49 0.52 -22.78 16 20 Si 0.88 20.69 29.67 -169.99 -5.04 15.64 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.15 2.92 6.07 -4.04 -0.02 2.89 16 25 C 0.04 0.73 6.27 37.15 0.23 0.96 16 26 O -0.38 -6.68 9.68 -35.23 -0.34 -7.02 16 27 C 0.03 0.44 11.01 101.05 1.11 1.55 16 28 C 0.13 1.74 6.03 -2.53 -0.02 1.72 16 29 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 36 H 0.08 0.80 8.03 -51.93 -0.42 0.38 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.39 5.63 8.47 -40.82 -0.35 5.28 16 39 H 0.11 2.81 6.39 -51.92 -0.33 2.48 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.03 0.56 7.22 -51.93 -0.37 0.18 16 42 H 0.08 1.91 6.03 -51.93 -0.31 1.60 16 43 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 44 H 0.06 1.18 8.05 -51.93 -0.42 0.77 16 45 H 0.05 0.88 8.06 -51.93 -0.42 0.46 16 46 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 49 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 51 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 52 H 0.08 1.33 7.40 -51.92 -0.38 0.95 16 LS Contribution 419.58 15.07 6.32 6.32 Total: -1.00 -33.16 419.58 -8.45 -41.60 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -9.31 Total: 3.96 kcal Atomic # 6 Polarization: 16.59 SS G_CDS: 0.57 Total: 17.16 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.82 Total: -56.95 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.16 Total: -27.75 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.04 Total: 15.64 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.16 -8.45 -41.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701003078.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.118 kcal (2) G-P(sol) polarization free energy of solvation -33.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds