Wall clock time and date at job start Wed Apr 1 2020 00:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47028 * 2 1 4 4 O 1.21283 * 119.99925 * 0.02562 * 3 2 1 5 5 N 1.34775 * 119.99872 * 179.97438 * 3 2 1 6 6 C 1.47424 * 125.65062 * 0.06431 * 5 3 2 7 7 C 1.54905 * 104.83367 * 204.07807 * 6 5 3 8 8 C 1.55152 * 101.58455 * 322.99265 * 7 6 5 9 9 H 1.09007 * 110.71699 * 277.14135 * 8 7 6 10 10 C 1.50698 * 110.72645 * 154.04191 * 8 7 6 11 11 O 1.21277 * 120.00206 * 241.44980 * 10 8 7 12 12 N 1.34779 * 119.99739 * 61.45094 * 10 8 7 13 13 C 1.46497 * 119.99809 * 180.02562 * 12 10 8 14 14 C 1.52998 * 109.47021 * 179.97438 * 13 12 10 15 15 N 1.46509 * 109.46895 * 180.02562 * 14 13 12 16 16 C 1.36932 * 119.99557 * 265.52389 * 15 14 13 17 17 H 1.08007 * 119.99519 * 149.24025 * 16 15 14 18 18 C 1.38813 * 120.00378 * 329.23375 * 16 15 14 19 19 N 1.31613 * 119.99752 * 332.69981 * 18 16 15 20 20 Si 1.86807 * 119.99988 * 152.70130 * 18 16 15 21 21 H 1.48494 * 109.47183 * 84.99691 * 20 18 16 22 22 H 1.48493 * 109.46914 * 205.00107 * 20 18 16 23 23 H 1.48498 * 109.47060 * 325.00130 * 20 18 16 24 24 C 1.46496 * 120.00028 * 85.52883 * 15 14 13 25 25 C 1.52992 * 109.47220 * 89.99704 * 24 15 14 26 26 O 1.42903 * 109.47577 * 65.00175 * 25 24 15 27 27 C 1.42888 * 114.00534 * 179.97438 * 26 25 24 28 28 C 1.47023 * 125.64553 * 180.02562 * 5 3 2 29 29 H 1.09006 * 109.47641 * 59.99272 * 1 2 3 30 30 H 1.09001 * 109.47515 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47143 * 299.99148 * 1 2 3 32 32 H 1.09008 * 109.46649 * 240.00824 * 2 1 3 33 33 H 1.08993 * 109.47383 * 120.00731 * 2 1 3 34 34 H 1.09003 * 110.36915 * 85.23704 * 6 5 3 35 35 H 1.09006 * 110.36722 * 322.91556 * 6 5 3 36 36 H 1.09002 * 111.00381 * 204.91128 * 7 6 5 37 37 H 1.09006 * 111.00520 * 81.06510 * 7 6 5 38 38 H 0.96997 * 119.99985 * 0.02562 * 12 10 8 39 39 H 1.09001 * 109.47337 * 300.00477 * 13 12 10 40 40 H 1.09005 * 109.47179 * 60.00360 * 13 12 10 41 41 H 1.09000 * 109.47162 * 299.99999 * 14 13 12 42 42 H 1.08994 * 109.47067 * 60.00628 * 14 13 12 43 43 H 0.97010 * 119.99783 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.46954 * 209.99837 * 24 15 14 45 45 H 1.09000 * 109.46913 * 329.99335 * 24 15 14 46 46 H 1.09002 * 109.47030 * 184.99844 * 25 24 15 47 47 H 1.08994 * 109.47705 * 304.99430 * 25 24 15 48 48 H 1.09005 * 109.46731 * 60.00010 * 27 26 25 49 49 H 1.09002 * 109.47203 * 179.97438 * 27 26 25 50 50 H 1.09001 * 109.47250 * 300.00117 * 27 26 25 51 51 H 1.08993 * 109.88295 * 59.57637 * 28 5 3 52 52 H 1.09000 * 110.01460 * 298.47385 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6671 0.0005 6 6 4.4210 0.6463 -0.0002 7 6 5.6536 1.3576 0.6116 8 6 5.5100 2.7877 0.0274 9 1 5.9235 2.8359 -0.9801 10 6 6.1759 3.7994 0.9240 11 8 5.5199 4.6836 1.4327 12 7 7.5005 3.7218 1.1605 13 6 8.1477 4.7050 2.0326 14 6 9.6419 4.3920 2.1332 15 7 10.2891 5.3749 3.0059 16 6 10.8810 6.4852 2.4656 17 1 10.9108 7.4080 3.0260 18 6 11.4429 6.4247 1.1977 19 7 11.8979 5.2803 0.7335 20 14 11.5534 7.9677 0.1504 21 1 12.7840 8.7194 0.5047 22 1 11.6003 7.5895 -1.2848 23 1 10.3636 8.8208 0.3989 24 6 10.3029 5.1699 4.4563 25 6 11.5530 4.3794 4.8478 26 8 12.7172 5.1584 4.5650 27 6 13.9459 4.5085 4.8961 28 6 3.9814 2.9983 0.0011 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8898 34 1 4.6362 0.3234 -1.0188 35 1 4.1301 -0.2051 0.6151 36 1 6.5800 0.8902 0.2778 37 1 5.5957 1.3726 1.7001 38 1 8.0252 3.0149 0.7533 39 1 8.0124 5.7037 1.6174 40 1 7.6999 4.6606 3.0254 41 1 9.7768 3.3933 2.5487 42 1 10.0901 4.4362 1.1406 43 1 12.2902 5.2380 -0.1528 44 1 10.3118 6.1366 4.9598 45 1 9.4136 4.6139 4.7532 46 1 11.5191 4.1502 5.9129 47 1 11.5894 3.4513 4.2774 48 1 14.0322 3.5829 4.3269 49 1 14.7814 5.1644 4.6513 50 1 13.9615 4.2822 5.9623 51 1 3.6685 3.5540 0.8850 52 1 3.6980 3.5436 -0.8991 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701003079.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:14 Heat of formation + Delta-G solvation = -95.702495 kcal Electronic energy + Delta-G solvation = -30211.238057 eV Core-core repulsion = 26018.699916 eV Total energy + Delta-G solvation = -4192.538141 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.58344 -39.32284 -37.40107 -37.16329 -35.80657 -34.06895 -33.20129 -31.96437 -31.54347 -29.52622 -29.21861 -27.49725 -25.63085 -25.56402 -23.82539 -23.05053 -22.64354 -21.78441 -20.17183 -19.67593 -19.39248 -17.72332 -17.36367 -16.68424 -16.01341 -15.68462 -15.65383 -15.51805 -15.22085 -15.10112 -14.82089 -14.59058 -14.06305 -13.90492 -13.85665 -13.60635 -13.36554 -13.11435 -12.94431 -12.62767 -12.58368 -12.40479 -12.17865 -12.09411 -11.94418 -11.60618 -11.55990 -11.49661 -11.24800 -11.14745 -11.01847 -10.82791 -10.68427 -10.32892 -10.23465 -10.04727 -9.96515 -9.84707 -9.57719 -8.88478 -8.82272 -8.62274 -8.42784 -6.70824 -5.80582 -3.23027 2.43146 2.66250 2.81103 3.38762 3.46409 3.48382 3.53197 4.03515 4.16920 4.45144 4.51894 4.60854 4.65313 4.73993 4.77208 4.94534 4.96863 5.07408 5.15756 5.24160 5.34510 5.42397 5.46423 5.47608 5.58043 5.65040 5.72594 5.74721 5.87981 5.89641 5.92464 6.01043 6.02653 6.07263 6.11626 6.12555 6.18432 6.34615 6.38747 6.48160 6.77033 6.86244 6.97159 7.25192 7.50299 7.82453 7.87366 7.95382 8.05120 8.44849 8.48799 9.16579 9.80617 10.33452 11.23770 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016062 B = 0.002171 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.857634 B =12896.741721 C =13835.079112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.524 3.476 4 O -0.538 6.538 5 N -0.622 5.622 6 C 0.100 3.900 7 C -0.124 4.124 8 C -0.124 4.124 9 H 0.112 0.888 10 C 0.517 3.483 11 O -0.542 6.542 12 N -0.715 5.715 13 C 0.097 3.903 14 C 0.135 3.865 15 N -0.572 5.572 16 C -0.237 4.237 17 H 0.065 0.935 18 C 0.008 3.992 19 N -0.885 5.885 20 Si 0.889 3.111 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.143 3.857 25 C 0.047 3.953 26 O -0.353 6.353 27 C 0.036 3.964 28 C 0.120 3.880 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.398 0.602 39 H 0.066 0.934 40 H 0.049 0.951 41 H 0.024 0.976 42 H 0.106 0.894 43 H 0.251 0.749 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.022 0.978 47 H 0.036 0.964 48 H 0.031 0.969 49 H 0.075 0.925 50 H 0.023 0.977 51 H 0.090 0.910 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.002 -16.347 -0.766 19.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C 0.313 3.687 4 O -0.415 6.415 5 N -0.357 5.357 6 C -0.023 4.023 7 C -0.162 4.162 8 C -0.146 4.146 9 H 0.130 0.870 10 C 0.301 3.699 11 O -0.419 6.419 12 N -0.365 5.365 13 C -0.028 4.028 14 C 0.008 3.992 15 N -0.291 5.291 16 C -0.367 4.367 17 H 0.083 0.917 18 C -0.191 4.191 19 N -0.529 5.529 20 Si 0.719 3.281 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.205 1.205 24 C 0.016 3.984 25 C -0.032 4.032 26 O -0.271 6.271 27 C -0.061 4.061 28 C -0.002 4.002 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.231 0.769 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.043 0.957 42 H 0.124 0.876 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.040 0.960 47 H 0.054 0.946 48 H 0.050 0.950 49 H 0.093 0.907 50 H 0.041 0.959 51 H 0.108 0.892 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.891 -15.034 -0.605 19.178 hybrid contribution 0.795 -0.010 -0.712 1.068 sum -11.095 -15.044 -1.318 18.740 Atomic orbital electron populations 1.21545 0.92945 1.01578 1.03478 1.21615 0.98583 0.93471 1.04195 1.20492 0.80212 0.91988 0.75981 1.90727 1.54293 1.46784 1.49675 1.48573 1.05279 1.08063 1.73800 1.22377 0.86960 0.91705 1.01270 1.22818 0.98480 0.93193 1.01718 1.22344 0.96053 0.95299 1.00916 0.86991 1.20087 0.82656 0.85486 0.81662 1.90713 1.63815 1.35956 1.51441 1.46053 1.07817 1.32614 1.50065 1.22388 0.96353 0.91861 0.92220 1.21071 0.87564 0.90372 1.00222 1.43693 1.61181 1.24735 0.99538 1.18978 1.30354 0.88044 0.99299 0.91683 1.24883 0.97464 0.96263 1.00441 1.70073 1.39668 1.25132 1.17997 0.86519 0.78123 0.83777 0.79683 1.21330 1.21732 1.20530 1.21076 0.92299 0.98080 0.86928 1.23293 0.88729 0.95470 0.95739 1.88153 1.12499 1.41153 1.85285 1.22574 0.88631 0.97788 0.97124 1.21764 0.89838 0.84500 1.04118 0.91957 0.92021 0.91911 0.88991 0.88968 0.90717 0.90106 0.88594 0.89774 0.76870 0.91523 0.93237 0.95715 0.87636 0.93933 0.92721 0.93033 0.96043 0.94553 0.95022 0.90674 0.95881 0.89224 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.20 37.16 0.34 -0.69 16 2 C -0.14 -0.98 5.43 -27.88 -0.15 -1.13 16 3 C 0.52 6.06 7.85 -10.99 -0.09 5.97 16 4 O -0.54 -8.61 16.31 5.56 0.09 -8.52 16 5 N -0.62 -6.47 3.33 -170.52 -0.57 -7.03 16 6 C 0.10 0.64 6.69 -2.53 -0.02 0.63 16 7 C -0.12 -0.91 6.47 -24.59 -0.16 -1.07 16 8 C -0.12 -1.30 3.33 -89.94 -0.30 -1.60 16 9 H 0.11 0.96 8.14 -51.92 -0.42 0.54 16 10 C 0.52 7.76 7.16 -10.99 -0.08 7.69 16 11 O -0.54 -10.61 15.48 5.56 0.09 -10.52 16 12 N -0.72 -10.63 5.50 -60.30 -0.33 -10.96 16 13 C 0.10 1.83 6.00 -4.04 -0.02 1.81 16 14 C 0.14 2.82 5.38 -4.04 -0.02 2.80 16 15 N -0.57 -13.31 2.45 -173.24 -0.42 -13.74 16 16 C -0.24 -6.27 8.98 -15.06 -0.14 -6.41 16 17 H 0.07 1.77 7.96 -52.48 -0.42 1.35 16 18 C 0.01 0.23 4.82 -17.43 -0.08 0.14 16 19 N -0.89 -24.18 11.44 55.49 0.63 -23.54 16 20 Si 0.89 21.46 29.63 -169.99 -5.04 16.42 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.14 2.86 6.12 -4.05 -0.02 2.84 16 25 C 0.05 0.91 6.28 37.15 0.23 1.14 16 26 O -0.35 -7.70 10.18 -35.23 -0.36 -8.06 16 27 C 0.04 0.62 11.01 101.05 1.11 1.73 16 28 C 0.12 1.49 6.26 -3.06 -0.02 1.47 16 29 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.09 0.49 7.85 -51.93 -0.41 0.08 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.37 7.48 -51.93 -0.39 -0.02 16 36 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.71 8.04 -51.93 -0.42 0.29 16 38 H 0.40 4.81 8.47 -40.82 -0.35 4.47 16 39 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.02 0.48 8.10 -51.93 -0.42 0.06 16 42 H 0.11 2.51 5.31 -51.93 -0.28 2.23 16 43 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 44 H 0.05 1.11 8.04 -51.93 -0.42 0.70 16 45 H 0.05 0.90 8.07 -51.93 -0.42 0.48 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 50 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.09 1.40 6.89 -51.93 -0.36 1.04 16 52 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 423.20 15.07 6.38 6.38 Total: -1.00 -34.74 423.20 -8.28 -43.02 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -9.34 Total: 1.23 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: 0.59 Total: 15.33 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.69 Total: -55.27 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.18 Total: -27.10 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.04 Total: 16.42 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -34.74 -8.28 -43.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701003079.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.679 kcal (2) G-P(sol) polarization free energy of solvation -34.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds