Wall clock time and date at job start Wed Apr 1 2020 00:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47028 * 2 1 4 4 O 1.21283 * 119.99925 * 0.02562 * 3 2 1 5 5 N 1.34775 * 119.99872 * 179.97438 * 3 2 1 6 6 C 1.47424 * 125.65062 * 0.06431 * 5 3 2 7 7 C 1.54905 * 104.83367 * 204.07807 * 6 5 3 8 8 C 1.55152 * 101.58455 * 322.99265 * 7 6 5 9 9 H 1.09007 * 110.71699 * 277.14135 * 8 7 6 10 10 C 1.50698 * 110.72645 * 154.04191 * 8 7 6 11 11 O 1.21277 * 120.00206 * 241.44980 * 10 8 7 12 12 N 1.34779 * 119.99739 * 61.45094 * 10 8 7 13 13 C 1.46497 * 119.99809 * 180.02562 * 12 10 8 14 14 C 1.52998 * 109.47021 * 179.97438 * 13 12 10 15 15 N 1.46509 * 109.46895 * 180.02562 * 14 13 12 16 16 C 1.36932 * 119.99557 * 265.52389 * 15 14 13 17 17 H 1.08007 * 119.99519 * 149.24025 * 16 15 14 18 18 C 1.38813 * 120.00378 * 329.23375 * 16 15 14 19 19 N 1.31613 * 119.99752 * 332.69981 * 18 16 15 20 20 Si 1.86807 * 119.99988 * 152.70130 * 18 16 15 21 21 H 1.48494 * 109.47183 * 84.99691 * 20 18 16 22 22 H 1.48493 * 109.46914 * 205.00107 * 20 18 16 23 23 H 1.48498 * 109.47060 * 325.00130 * 20 18 16 24 24 C 1.46496 * 120.00028 * 85.52883 * 15 14 13 25 25 C 1.52992 * 109.47220 * 89.99704 * 24 15 14 26 26 O 1.42903 * 109.47577 * 65.00175 * 25 24 15 27 27 C 1.42888 * 114.00534 * 179.97438 * 26 25 24 28 28 C 1.47023 * 125.64553 * 180.02562 * 5 3 2 29 29 H 1.09006 * 109.47641 * 59.99272 * 1 2 3 30 30 H 1.09001 * 109.47515 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47143 * 299.99148 * 1 2 3 32 32 H 1.09008 * 109.46649 * 240.00824 * 2 1 3 33 33 H 1.08993 * 109.47383 * 120.00731 * 2 1 3 34 34 H 1.09003 * 110.36915 * 85.23704 * 6 5 3 35 35 H 1.09006 * 110.36722 * 322.91556 * 6 5 3 36 36 H 1.09002 * 111.00381 * 204.91128 * 7 6 5 37 37 H 1.09006 * 111.00520 * 81.06510 * 7 6 5 38 38 H 0.96997 * 119.99985 * 0.02562 * 12 10 8 39 39 H 1.09001 * 109.47337 * 300.00477 * 13 12 10 40 40 H 1.09005 * 109.47179 * 60.00360 * 13 12 10 41 41 H 1.09000 * 109.47162 * 299.99999 * 14 13 12 42 42 H 1.08994 * 109.47067 * 60.00628 * 14 13 12 43 43 H 0.97010 * 119.99783 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.46954 * 209.99837 * 24 15 14 45 45 H 1.09000 * 109.46913 * 329.99335 * 24 15 14 46 46 H 1.09002 * 109.47030 * 184.99844 * 25 24 15 47 47 H 1.08994 * 109.47705 * 304.99430 * 25 24 15 48 48 H 1.09005 * 109.46731 * 60.00010 * 27 26 25 49 49 H 1.09002 * 109.47203 * 179.97438 * 27 26 25 50 50 H 1.09001 * 109.47250 * 300.00117 * 27 26 25 51 51 H 1.08993 * 109.88295 * 59.57637 * 28 5 3 52 52 H 1.09000 * 110.01460 * 298.47385 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6671 0.0005 6 6 4.4210 0.6463 -0.0002 7 6 5.6536 1.3576 0.6116 8 6 5.5100 2.7877 0.0274 9 1 5.9235 2.8359 -0.9801 10 6 6.1759 3.7994 0.9240 11 8 5.5199 4.6836 1.4327 12 7 7.5005 3.7218 1.1605 13 6 8.1477 4.7050 2.0326 14 6 9.6419 4.3920 2.1332 15 7 10.2891 5.3749 3.0059 16 6 10.8810 6.4852 2.4656 17 1 10.9108 7.4080 3.0260 18 6 11.4429 6.4247 1.1977 19 7 11.8979 5.2803 0.7335 20 14 11.5534 7.9677 0.1504 21 1 12.7840 8.7194 0.5047 22 1 11.6003 7.5895 -1.2848 23 1 10.3636 8.8208 0.3989 24 6 10.3029 5.1699 4.4563 25 6 11.5530 4.3794 4.8478 26 8 12.7172 5.1584 4.5650 27 6 13.9459 4.5085 4.8961 28 6 3.9814 2.9983 0.0011 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8898 34 1 4.6362 0.3234 -1.0188 35 1 4.1301 -0.2051 0.6151 36 1 6.5800 0.8902 0.2778 37 1 5.5957 1.3726 1.7001 38 1 8.0252 3.0149 0.7533 39 1 8.0124 5.7037 1.6174 40 1 7.6999 4.6606 3.0254 41 1 9.7768 3.3933 2.5487 42 1 10.0901 4.4362 1.1406 43 1 12.2902 5.2380 -0.1528 44 1 10.3118 6.1366 4.9598 45 1 9.4136 4.6139 4.7532 46 1 11.5191 4.1502 5.9129 47 1 11.5894 3.4513 4.2774 48 1 14.0322 3.5829 4.3269 49 1 14.7814 5.1644 4.6513 50 1 13.9615 4.2822 5.9623 51 1 3.6685 3.5540 0.8850 52 1 3.6980 3.5436 -0.8991 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701003079.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:13 Heat of formation + Delta-G solvation = -120.881464 kcal Electronic energy + Delta-G solvation = -30212.329899 eV Core-core repulsion = 26018.699916 eV Total energy + Delta-G solvation = -4193.629983 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.53913 -40.45129 -38.88383 -38.21954 -37.43645 -35.56729 -33.92777 -33.47627 -32.77896 -30.85438 -30.14416 -29.14011 -27.10981 -26.52233 -25.41160 -24.11433 -23.58019 -23.00325 -21.77423 -20.93628 -20.15740 -18.90649 -18.36520 -18.14513 -17.21100 -16.99916 -16.95849 -16.82604 -16.52844 -16.34603 -16.30350 -15.75926 -15.54317 -15.34784 -15.04697 -14.68627 -14.51727 -14.37826 -13.93320 -13.83831 -13.77047 -13.29920 -13.19767 -13.14895 -13.03546 -12.91606 -12.68641 -12.59061 -12.51746 -12.48256 -12.35060 -12.08576 -12.06404 -11.96203 -11.83476 -11.74004 -11.58791 -10.96223 -10.88843 -10.45185 -10.29538 -10.03717 -9.71929 -8.60754 -7.80970 -5.24398 1.44811 1.49002 1.57446 1.59091 1.60891 1.82185 2.30360 2.58250 3.18444 3.25706 3.34142 3.46871 3.68272 3.76027 3.87865 4.16768 4.21317 4.24156 4.28077 4.33602 4.37130 4.41446 4.50675 4.52797 4.60551 4.63296 4.67971 4.72063 4.78233 4.79023 4.80764 4.85352 4.86432 4.93196 4.96268 5.00361 5.06089 5.14703 5.21565 5.23666 5.29113 5.36599 5.45172 5.76156 5.79899 6.46338 6.48209 6.61584 6.64564 7.11894 7.21461 7.28356 7.90569 8.38369 9.19793 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016062 B = 0.002171 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.857634 B =12896.741721 C =13835.079112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.511 3.489 4 O -0.598 6.598 5 N -0.622 5.622 6 C 0.098 3.902 7 C -0.117 4.117 8 C -0.111 4.111 9 H 0.141 0.859 10 C 0.515 3.485 11 O -0.594 6.594 12 N -0.704 5.704 13 C 0.118 3.882 14 C 0.145 3.855 15 N -0.588 5.588 16 C -0.240 4.240 17 H 0.048 0.952 18 C -0.030 4.030 19 N -0.903 5.903 20 Si 0.935 3.065 21 H -0.289 1.289 22 H -0.289 1.289 23 H -0.285 1.285 24 C 0.138 3.862 25 C 0.052 3.948 26 O -0.397 6.397 27 C 0.034 3.966 28 C 0.119 3.881 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.040 0.960 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.132 0.868 37 H 0.072 0.928 38 H 0.415 0.585 39 H 0.028 0.972 40 H 0.046 0.954 41 H 0.044 0.956 42 H 0.081 0.919 43 H 0.249 0.751 44 H 0.045 0.955 45 H 0.079 0.921 46 H 0.057 0.943 47 H 0.030 0.970 48 H 0.030 0.970 49 H 0.078 0.922 50 H 0.053 0.947 51 H 0.047 0.953 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.459 -19.981 -0.945 22.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.303 3.697 4 O -0.480 6.480 5 N -0.355 5.355 6 C -0.023 4.023 7 C -0.155 4.155 8 C -0.132 4.132 9 H 0.159 0.841 10 C 0.302 3.698 11 O -0.475 6.475 12 N -0.355 5.355 13 C -0.009 4.009 14 C 0.018 3.982 15 N -0.308 5.308 16 C -0.371 4.371 17 H 0.065 0.935 18 C -0.227 4.227 19 N -0.547 5.547 20 Si 0.765 3.235 21 H -0.216 1.216 22 H -0.215 1.215 23 H -0.211 1.211 24 C 0.012 3.988 25 C -0.027 4.027 26 O -0.316 6.316 27 C -0.063 4.063 28 C -0.005 4.005 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.060 0.940 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.150 0.850 37 H 0.091 0.909 38 H 0.252 0.748 39 H 0.047 0.953 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.097 0.903 46 H 0.075 0.925 47 H 0.048 0.952 48 H 0.049 0.951 49 H 0.097 0.903 50 H 0.072 0.928 51 H 0.066 0.934 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.306 -18.740 -0.786 21.900 hybrid contribution 0.611 1.141 -0.567 1.413 sum -10.696 -17.598 -1.353 20.638 Atomic orbital electron populations 1.21565 0.93682 1.02809 1.01627 1.21690 0.97858 0.90341 1.06845 1.21500 0.80074 0.93433 0.74716 1.90698 1.55897 1.48910 1.52449 1.48721 1.05932 1.08078 1.72803 1.22733 0.84858 0.91116 1.03602 1.22926 1.00796 0.90700 1.01075 1.22293 0.93820 0.95842 1.01285 0.84131 1.20891 0.82194 0.85492 0.81247 1.90700 1.64882 1.38332 1.53570 1.45831 1.08013 1.32176 1.49490 1.21853 0.95581 0.90979 0.92486 1.20930 0.87853 0.90749 0.98684 1.43858 1.61346 1.24499 1.01136 1.18987 1.29867 0.88700 0.99512 0.93464 1.25309 0.98084 0.98064 1.01214 1.70141 1.40642 1.25973 1.17981 0.85807 0.77476 0.81582 0.78663 1.21568 1.21471 1.21132 1.21221 0.94232 0.98385 0.84987 1.23214 0.87465 0.94344 0.97652 1.88083 1.14362 1.42986 1.86145 1.22716 0.87051 0.97505 0.99020 1.21565 0.91567 0.85747 1.01588 0.93698 0.89070 0.94035 0.85838 0.86297 0.87773 0.87157 0.85008 0.90913 0.74789 0.95323 0.93519 0.93732 0.90085 0.94203 0.93694 0.90288 0.92516 0.95219 0.95117 0.90323 0.92826 0.93438 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.20 71.98 0.66 -1.23 16 2 C -0.13 -1.43 5.43 29.85 0.16 -1.27 16 3 C 0.51 11.46 7.85 87.66 0.69 12.15 16 4 O -0.60 -20.13 16.31 -3.04 -0.05 -20.18 16 5 N -0.62 -11.95 3.33 -811.78 -2.70 -14.65 16 6 C 0.10 0.82 6.69 86.85 0.58 1.40 16 7 C -0.12 -1.26 6.47 31.98 0.21 -1.06 16 8 C -0.11 -2.12 3.33 -10.35 -0.03 -2.16 16 9 H 0.14 1.97 8.14 -2.38 -0.02 1.95 16 10 C 0.51 15.38 7.16 87.66 0.63 16.01 16 11 O -0.59 -24.30 15.48 -3.02 -0.05 -24.35 16 12 N -0.70 -20.28 5.50 -463.07 -2.55 -22.82 16 13 C 0.12 4.47 6.00 86.38 0.52 4.98 16 14 C 0.14 5.98 5.38 86.38 0.47 6.45 16 15 N -0.59 -27.42 2.45 -702.01 -1.72 -29.14 16 16 C -0.24 -12.91 8.98 84.03 0.75 -12.15 16 17 H 0.05 2.66 7.96 -2.91 -0.02 2.63 16 18 C -0.03 -1.60 4.82 84.86 0.41 -1.19 16 19 N -0.90 -49.50 11.44 21.65 0.25 -49.25 16 20 Si 0.94 44.80 29.63 68.60 2.03 46.83 16 21 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 24 C 0.14 5.38 6.12 86.38 0.53 5.91 16 25 C 0.05 1.90 6.28 71.98 0.45 2.36 16 26 O -0.40 -16.95 10.18 -148.98 -1.52 -18.46 16 27 C 0.03 1.10 11.01 113.37 1.25 2.34 16 28 C 0.12 3.00 6.26 86.73 0.54 3.55 16 29 H 0.04 0.75 8.10 -2.38 -0.02 0.73 16 30 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.04 0.73 8.10 -2.38 -0.02 0.71 16 32 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.12 0.74 7.85 -2.39 -0.02 0.72 16 34 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.11 0.37 7.48 -2.38 -0.02 0.35 16 36 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.07 1.00 8.04 -2.38 -0.02 0.98 16 38 H 0.42 9.08 8.47 -92.71 -0.79 8.30 16 39 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.05 1.79 8.14 -2.38 -0.02 1.78 16 41 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 42 H 0.08 3.84 5.31 -2.39 -0.01 3.83 16 43 H 0.25 13.27 8.31 -92.70 -0.77 12.50 16 44 H 0.04 1.82 8.04 -2.39 -0.02 1.80 16 45 H 0.08 2.61 8.07 -2.39 -0.02 2.59 16 46 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 49 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 50 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 51 H 0.05 1.60 6.89 -2.39 -0.02 1.58 16 52 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -81.95 423.20 1.62 -80.33 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.11 Total: 15.60 kcal Atomic # 6 Polarization: 28.27 SS G_CDS: 7.81 Total: 36.09 kcal Atomic # 7 Polarization: -109.14 SS G_CDS: -6.72 Total: -115.86 kcal Atomic # 8 Polarization: -61.38 SS G_CDS: -1.61 Total: -62.99 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -81.95 1.62 -80.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701003079.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.551 kcal (2) G-P(sol) polarization free energy of solvation -81.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds