Wall clock time and date at job start Wed Apr 1 2020 01:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42896 * 113.99765 * 2 1 4 4 C 1.50706 * 109.47148 * 180.02562 * 3 2 1 5 5 O 1.21284 * 119.99589 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00132 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00192 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47371 * 179.97438 * 7 6 4 9 9 C 1.50699 * 109.46951 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00431 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99803 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99660 * 180.27777 * 11 9 8 13 13 H 1.08999 * 109.47352 * 324.72436 * 12 11 9 14 14 C 1.52995 * 109.46973 * 84.73117 * 12 11 9 15 15 C 1.52998 * 109.46664 * 204.72646 * 12 11 9 16 16 C 1.53035 * 109.46562 * 300.06888 * 15 12 11 17 17 C 1.53188 * 109.31720 * 178.61554 * 16 15 12 18 18 N 1.46926 * 108.77607 * 54.63509 * 17 16 15 19 19 C 1.36933 * 120.63093 * 126.41383 * 18 17 16 20 20 H 1.08003 * 120.00039 * 331.80993 * 19 18 17 21 21 C 1.38810 * 120.00187 * 151.80755 * 19 18 17 22 22 N 1.31616 * 120.00086 * 343.08690 * 21 19 18 23 23 Si 1.86800 * 120.00157 * 163.08561 * 21 19 18 24 24 H 1.48496 * 109.47448 * 60.00009 * 23 21 19 25 25 H 1.48503 * 109.47303 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47192 * 300.00241 * 23 21 19 27 27 C 1.46928 * 118.73941 * 306.39285 * 18 17 16 28 28 C 1.53042 * 109.45933 * 180.02562 * 15 12 11 29 29 H 1.09001 * 109.47194 * 59.99675 * 1 2 3 30 30 H 1.09000 * 109.46847 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46721 * 299.99509 * 1 2 3 32 32 H 1.08994 * 109.47216 * 60.00172 * 3 2 1 33 33 H 1.09006 * 109.47522 * 300.00376 * 3 2 1 34 34 H 0.97004 * 120.00312 * 359.97438 * 6 4 3 35 35 H 1.09003 * 109.47054 * 59.99594 * 7 6 4 36 36 H 1.09006 * 109.46839 * 300.00056 * 7 6 4 37 37 H 1.09003 * 109.47102 * 59.99943 * 8 7 6 38 38 H 1.08998 * 109.47148 * 299.99787 * 8 7 6 39 39 H 0.96997 * 119.99586 * 0.02562 * 11 9 8 40 40 H 1.08999 * 109.47026 * 299.99378 * 14 12 11 41 41 H 1.08999 * 109.47637 * 59.99494 * 14 12 11 42 42 H 1.09007 * 109.46893 * 179.97438 * 14 12 11 43 43 H 1.09005 * 109.46383 * 60.03291 * 15 12 11 44 44 H 1.09002 * 109.49755 * 298.57182 * 16 15 12 45 45 H 1.09006 * 109.49523 * 58.66038 * 16 15 12 46 46 H 1.08994 * 109.58686 * 294.84925 * 17 16 15 47 47 H 1.09002 * 109.70590 * 174.49310 * 17 16 15 48 48 H 0.96995 * 120.00443 * 179.97438 * 22 21 19 49 49 H 1.08999 * 109.58201 * 293.82306 * 27 18 17 50 50 H 1.08999 * 109.58585 * 173.39127 * 27 18 17 51 51 H 1.08997 * 109.50089 * 301.33736 * 28 15 12 52 52 H 1.09000 * 109.49943 * 61.40433 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0006 6 7 4.2765 2.2968 -0.0002 7 6 5.7369 2.1813 -0.0003 8 6 6.3592 3.5790 -0.0004 9 6 7.8615 3.4599 0.0002 10 8 8.3831 2.3651 0.0002 11 7 8.6254 4.5704 -0.0003 12 6 10.0859 4.4546 -0.0059 13 1 10.3840 3.5884 0.5847 14 6 10.5785 4.2852 -1.4444 15 6 10.6999 5.7193 0.5978 16 6 10.2798 6.9356 -0.2305 17 6 10.8679 8.2034 0.3968 18 7 12.3216 8.0356 0.5279 19 6 13.1811 8.9660 0.0075 20 1 12.8873 9.5520 -0.8508 21 6 14.4299 9.1559 0.5830 22 7 14.6703 8.7071 1.7967 23 14 15.7693 10.0483 -0.3651 24 1 15.3124 11.4229 -0.6922 25 1 16.9993 10.1193 0.4640 26 1 16.0614 9.3118 -1.6211 27 6 12.8357 6.8509 1.2286 28 6 12.2255 5.5985 0.5913 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6886 1.8463 0.8899 33 1 1.6886 1.8465 -0.8900 34 1 3.8593 3.1726 0.0001 35 1 6.0585 1.6406 -0.8904 36 1 6.0585 1.6400 0.8896 37 1 6.0376 4.1200 0.8896 38 1 6.0376 4.1198 -0.8904 39 1 8.2082 5.4460 -0.0007 40 1 10.1410 3.3843 -1.8746 41 1 10.2804 5.1515 -2.0351 42 1 11.6652 4.1996 -1.4486 43 1 10.3492 5.8396 1.6229 44 1 10.6515 6.8278 -1.2495 45 1 9.1922 7.0077 -0.2452 46 1 10.4281 8.3617 1.3814 47 1 10.6552 9.0616 -0.2407 48 1 15.5430 8.8394 2.1988 49 1 12.5563 6.8989 2.2810 50 1 13.9213 6.8151 1.1377 51 1 12.5233 4.7187 1.1617 52 1 12.5785 5.5029 -0.4355 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701009701.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:00 Heat of formation + Delta-G solvation = -106.727378 kcal Electronic energy + Delta-G solvation = -29567.746230 eV Core-core repulsion = 25374.730014 eV Total energy + Delta-G solvation = -4193.016216 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.36010 -39.89557 -38.21660 -37.85804 -35.63331 -35.20117 -32.97645 -31.87074 -31.00946 -29.84645 -29.22241 -28.68508 -26.46889 -25.49729 -24.28250 -23.06177 -22.31266 -21.22118 -20.68296 -20.20425 -18.71130 -17.86862 -17.42951 -17.00783 -16.86146 -16.64473 -16.15467 -15.84749 -15.59502 -14.94216 -14.85045 -14.80277 -14.32443 -14.02424 -13.78652 -13.71417 -13.56382 -13.41240 -13.11045 -12.84548 -12.59602 -12.52313 -12.34012 -12.09627 -11.97728 -11.81479 -11.68143 -11.42979 -11.26213 -10.92891 -10.72747 -10.48038 -10.33473 -10.25343 -10.20902 -10.13562 -10.03884 -9.85727 -9.53866 -9.49572 -9.43502 -9.02569 -8.48087 -6.68638 -5.80615 -3.23365 2.22769 2.29452 2.52353 3.14388 3.36663 3.43011 3.43881 3.61910 4.20010 4.40444 4.47839 4.54421 4.59506 4.66249 4.67442 4.79933 4.84799 4.99414 5.08621 5.12410 5.17121 5.30405 5.37742 5.49856 5.51587 5.63694 5.65632 5.71077 5.82753 5.94982 6.00704 6.08235 6.12747 6.24614 6.35218 6.39025 6.43827 6.53060 6.60381 6.70660 6.74648 6.79019 6.95465 7.03193 7.35972 7.45789 7.64637 7.77308 7.82209 8.14351 8.43603 9.19799 9.83337 10.40053 11.27769 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.038963 B = 0.001534 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.449313 B =18252.592444 C =18513.307210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.511 3.489 5 O -0.513 6.513 6 N -0.732 5.732 7 C 0.136 3.864 8 C -0.155 4.155 9 C 0.515 3.485 10 O -0.539 6.539 11 N -0.720 5.720 12 C 0.145 3.855 13 H 0.084 0.916 14 C -0.162 4.162 15 C -0.085 4.085 16 C -0.128 4.128 17 C 0.145 3.855 18 N -0.591 5.591 19 C -0.254 4.254 20 H 0.064 0.936 21 C 0.004 3.996 22 N -0.903 5.903 23 Si 0.902 3.098 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.172 3.828 28 C -0.134 4.134 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.400 0.600 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.400 0.600 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.043 0.957 46 H 0.015 0.985 47 H 0.052 0.948 48 H 0.254 0.746 49 H 0.017 0.983 50 H 0.087 0.913 51 H 0.050 0.950 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.269 -9.231 -3.765 28.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.036 4.036 4 C 0.296 3.704 5 O -0.387 6.387 6 N -0.387 5.387 7 C 0.013 3.987 8 C -0.195 4.195 9 C 0.300 3.700 10 O -0.416 6.416 11 N -0.372 5.372 12 C 0.041 3.959 13 H 0.102 0.898 14 C -0.220 4.220 15 C -0.104 4.104 16 C -0.168 4.168 17 C 0.019 3.981 18 N -0.314 5.314 19 C -0.384 4.384 20 H 0.082 0.918 21 C -0.195 4.195 22 N -0.547 5.547 23 Si 0.731 3.269 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.210 1.210 27 C 0.046 3.954 28 C -0.174 4.174 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.234 0.766 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.235 0.765 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.062 0.938 46 H 0.033 0.967 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.035 0.965 50 H 0.105 0.895 51 H 0.068 0.932 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -25.218 -10.986 -3.657 27.749 hybrid contribution 0.059 1.740 -0.395 1.786 sum -25.160 -9.246 -4.052 27.109 Atomic orbital electron populations 1.22860 0.80176 1.03493 1.00172 1.88034 1.19935 1.25083 1.95425 1.22233 0.91500 0.87191 1.02715 1.20253 0.88691 0.84575 0.76906 1.90780 1.74547 1.26426 1.46922 1.45856 1.07244 1.08754 1.76813 1.21045 0.77620 0.95694 1.04374 1.21818 0.93506 0.99020 1.05174 1.20255 0.88738 0.84688 0.76332 1.90748 1.74977 1.26532 1.49375 1.46240 1.07638 1.08637 1.74698 1.21141 0.77997 0.99552 0.97222 0.89825 1.22224 1.02100 1.01495 0.96223 1.21318 0.97277 0.92736 0.99043 1.22117 0.97785 0.96736 1.00119 1.20875 0.86181 0.94189 0.96875 1.44024 0.99300 1.21963 1.66101 1.19131 0.96093 1.15407 1.07771 0.91828 1.25034 0.99695 0.99607 0.95181 1.70014 1.22304 1.49923 1.12447 0.86389 0.81550 0.79608 0.79319 1.20916 1.21631 1.21029 1.20769 0.99597 0.82544 0.92508 1.22266 0.93060 1.00362 1.01726 0.93717 0.88976 0.93713 0.90101 0.90129 0.76580 0.90327 0.90285 0.88125 0.88165 0.76488 0.92984 0.92154 0.91027 0.91450 0.91699 0.93840 0.96722 0.92940 0.93569 0.96527 0.89458 0.93167 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.37 -3.35 10.24 -55.14 -0.56 -3.92 16 3 C 0.04 0.26 6.42 36.01 0.23 0.49 16 4 C 0.51 4.87 7.91 -10.98 -0.09 4.79 16 5 O -0.51 -7.79 16.50 -14.36 -0.24 -8.02 16 6 N -0.73 -4.76 5.56 -60.29 -0.33 -5.10 16 7 C 0.14 1.21 4.96 -4.04 -0.02 1.19 16 8 C -0.15 -1.01 5.81 -27.88 -0.16 -1.17 16 9 C 0.51 5.73 7.79 -10.98 -0.09 5.65 16 10 O -0.54 -8.41 15.65 5.56 0.09 -8.32 16 11 N -0.72 -7.66 5.00 -53.81 -0.27 -7.92 16 12 C 0.14 1.92 2.40 -67.93 -0.16 1.76 16 13 H 0.08 1.26 7.58 -51.93 -0.39 0.86 16 14 C -0.16 -2.15 8.78 37.15 0.33 -1.83 16 15 C -0.08 -1.27 2.14 -90.58 -0.19 -1.46 16 16 C -0.13 -1.93 4.81 -26.62 -0.13 -2.05 16 17 C 0.15 2.82 6.52 -3.71 -0.02 2.80 16 18 N -0.59 -14.18 2.99 -172.32 -0.52 -14.70 16 19 C -0.25 -6.80 9.58 -15.06 -0.14 -6.94 16 20 H 0.06 1.67 7.89 -52.48 -0.41 1.25 16 21 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 22 N -0.90 -25.78 11.20 55.49 0.62 -25.16 16 23 Si 0.90 21.33 29.59 -169.99 -5.03 16.30 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C 0.17 3.94 5.30 -3.71 -0.02 3.92 16 28 C -0.13 -2.41 4.96 -26.61 -0.13 -2.54 16 29 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.40 1.00 8.47 -40.82 -0.35 0.66 16 35 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 36 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 37 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.40 3.34 6.84 -40.82 -0.28 3.06 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.77 6.46 -51.93 -0.34 0.44 16 42 H 0.07 0.99 6.46 -51.92 -0.34 0.65 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.06 1.03 6.51 -51.93 -0.34 0.69 16 45 H 0.04 0.51 6.46 -51.93 -0.34 0.17 16 46 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.05 1.01 7.93 -51.93 -0.41 0.59 16 48 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.09 2.28 6.06 -51.93 -0.31 1.96 16 51 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 52 H 0.06 1.12 6.51 -51.93 -0.34 0.79 16 LS Contribution 410.74 15.07 6.19 6.19 Total: -1.00 -36.26 410.74 -8.52 -44.78 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -8.89 Total: 0.01 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 0.42 Total: 5.86 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.50 Total: -52.88 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.71 Total: -20.26 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.26 -8.52 -44.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701009701.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.949 kcal (2) G-P(sol) polarization free energy of solvation -36.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds