Wall clock time and date at job start Wed Apr 1 2020 01:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42896 * 113.99765 * 2 1 4 4 C 1.50706 * 109.47148 * 180.02562 * 3 2 1 5 5 O 1.21284 * 119.99589 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00132 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00192 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47371 * 179.97438 * 7 6 4 9 9 C 1.50699 * 109.46951 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00431 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99803 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99660 * 180.27777 * 11 9 8 13 13 H 1.08999 * 109.47352 * 324.72436 * 12 11 9 14 14 C 1.52995 * 109.46973 * 84.73117 * 12 11 9 15 15 C 1.52998 * 109.46664 * 204.72646 * 12 11 9 16 16 C 1.53035 * 109.46562 * 300.06888 * 15 12 11 17 17 C 1.53188 * 109.31720 * 178.61554 * 16 15 12 18 18 N 1.46926 * 108.77607 * 54.63509 * 17 16 15 19 19 C 1.36933 * 120.63093 * 126.41383 * 18 17 16 20 20 H 1.08003 * 120.00039 * 331.80993 * 19 18 17 21 21 C 1.38810 * 120.00187 * 151.80755 * 19 18 17 22 22 N 1.31616 * 120.00086 * 343.08690 * 21 19 18 23 23 Si 1.86800 * 120.00157 * 163.08561 * 21 19 18 24 24 H 1.48496 * 109.47448 * 60.00009 * 23 21 19 25 25 H 1.48503 * 109.47303 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47192 * 300.00241 * 23 21 19 27 27 C 1.46928 * 118.73941 * 306.39285 * 18 17 16 28 28 C 1.53042 * 109.45933 * 180.02562 * 15 12 11 29 29 H 1.09001 * 109.47194 * 59.99675 * 1 2 3 30 30 H 1.09000 * 109.46847 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46721 * 299.99509 * 1 2 3 32 32 H 1.08994 * 109.47216 * 60.00172 * 3 2 1 33 33 H 1.09006 * 109.47522 * 300.00376 * 3 2 1 34 34 H 0.97004 * 120.00312 * 359.97438 * 6 4 3 35 35 H 1.09003 * 109.47054 * 59.99594 * 7 6 4 36 36 H 1.09006 * 109.46839 * 300.00056 * 7 6 4 37 37 H 1.09003 * 109.47102 * 59.99943 * 8 7 6 38 38 H 1.08998 * 109.47148 * 299.99787 * 8 7 6 39 39 H 0.96997 * 119.99586 * 0.02562 * 11 9 8 40 40 H 1.08999 * 109.47026 * 299.99378 * 14 12 11 41 41 H 1.08999 * 109.47637 * 59.99494 * 14 12 11 42 42 H 1.09007 * 109.46893 * 179.97438 * 14 12 11 43 43 H 1.09005 * 109.46383 * 60.03291 * 15 12 11 44 44 H 1.09002 * 109.49755 * 298.57182 * 16 15 12 45 45 H 1.09006 * 109.49523 * 58.66038 * 16 15 12 46 46 H 1.08994 * 109.58686 * 294.84925 * 17 16 15 47 47 H 1.09002 * 109.70590 * 174.49310 * 17 16 15 48 48 H 0.96995 * 120.00443 * 179.97438 * 22 21 19 49 49 H 1.08999 * 109.58201 * 293.82306 * 27 18 17 50 50 H 1.08999 * 109.58585 * 173.39127 * 27 18 17 51 51 H 1.08997 * 109.50089 * 301.33736 * 28 15 12 52 52 H 1.09000 * 109.49943 * 61.40433 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0006 6 7 4.2765 2.2968 -0.0002 7 6 5.7369 2.1813 -0.0003 8 6 6.3592 3.5790 -0.0004 9 6 7.8615 3.4599 0.0002 10 8 8.3831 2.3651 0.0002 11 7 8.6254 4.5704 -0.0003 12 6 10.0859 4.4546 -0.0059 13 1 10.3840 3.5884 0.5847 14 6 10.5785 4.2852 -1.4444 15 6 10.6999 5.7193 0.5978 16 6 10.2798 6.9356 -0.2305 17 6 10.8679 8.2034 0.3968 18 7 12.3216 8.0356 0.5279 19 6 13.1811 8.9660 0.0075 20 1 12.8873 9.5520 -0.8508 21 6 14.4299 9.1559 0.5830 22 7 14.6703 8.7071 1.7967 23 14 15.7693 10.0483 -0.3651 24 1 15.3124 11.4229 -0.6922 25 1 16.9993 10.1193 0.4640 26 1 16.0614 9.3118 -1.6211 27 6 12.8357 6.8509 1.2286 28 6 12.2255 5.5985 0.5913 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6886 1.8463 0.8899 33 1 1.6886 1.8465 -0.8900 34 1 3.8593 3.1726 0.0001 35 1 6.0585 1.6406 -0.8904 36 1 6.0585 1.6400 0.8896 37 1 6.0376 4.1200 0.8896 38 1 6.0376 4.1198 -0.8904 39 1 8.2082 5.4460 -0.0007 40 1 10.1410 3.3843 -1.8746 41 1 10.2804 5.1515 -2.0351 42 1 11.6652 4.1996 -1.4486 43 1 10.3492 5.8396 1.6229 44 1 10.6515 6.8278 -1.2495 45 1 9.1922 7.0077 -0.2452 46 1 10.4281 8.3617 1.3814 47 1 10.6552 9.0616 -0.2407 48 1 15.5430 8.8394 2.1988 49 1 12.5563 6.8989 2.2810 50 1 13.9213 6.8151 1.1377 51 1 12.5233 4.7187 1.1617 52 1 12.5785 5.5029 -0.4355 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701009701.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:59 Heat of formation + Delta-G solvation = -134.332116 kcal Electronic energy + Delta-G solvation = -29568.943262 eV Core-core repulsion = 25374.730014 eV Total energy + Delta-G solvation = -4194.213247 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.23144 -40.73142 -39.50457 -38.43059 -36.87899 -36.17473 -34.46184 -33.04722 -32.17061 -31.37122 -30.33534 -29.43576 -27.15548 -26.86819 -25.35251 -24.32834 -23.76376 -22.15648 -21.87329 -21.17812 -20.12673 -18.68673 -18.43662 -18.11276 -17.58158 -17.39532 -17.09289 -16.74065 -16.57048 -16.29198 -15.79573 -15.60674 -15.54039 -15.34527 -15.27063 -14.76832 -14.73583 -14.45634 -14.08873 -14.02317 -14.01446 -13.58374 -13.13749 -13.02503 -12.98806 -12.90401 -12.82980 -12.57947 -12.48148 -12.40907 -12.33872 -12.13875 -11.95056 -11.63643 -11.58471 -11.18462 -11.04426 -10.94203 -10.78443 -10.74696 -10.49532 -10.20701 -10.03152 -8.63859 -7.84944 -5.29838 1.47463 1.50188 1.54336 1.56328 1.68062 1.70054 2.35473 2.53083 3.16817 3.29774 3.61469 3.72750 3.82264 3.82912 3.90648 4.03597 4.08918 4.10199 4.23258 4.31578 4.41158 4.45513 4.51872 4.54153 4.60092 4.63468 4.64948 4.76836 4.82627 4.86565 4.89705 4.95155 4.96143 5.00151 5.06977 5.20374 5.26091 5.31430 5.32754 5.35878 5.46958 5.58079 5.60468 5.69541 5.83016 6.06363 6.42079 6.53907 6.63345 7.18145 7.22725 7.32428 7.91243 8.41900 9.20916 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.038963 B = 0.001534 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.449313 B =18252.592444 C =18513.307210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.046 3.954 4 C 0.502 3.498 5 O -0.583 6.583 6 N -0.708 5.708 7 C 0.139 3.861 8 C -0.136 4.136 9 C 0.511 3.489 10 O -0.591 6.591 11 N -0.709 5.709 12 C 0.156 3.844 13 H 0.065 0.935 14 C -0.157 4.157 15 C -0.073 4.073 16 C -0.114 4.114 17 C 0.138 3.862 18 N -0.610 5.610 19 C -0.261 4.261 20 H 0.067 0.933 21 C -0.051 4.051 22 N -0.936 5.936 23 Si 0.963 3.037 24 H -0.274 1.274 25 H -0.297 1.297 26 H -0.279 1.279 27 C 0.178 3.822 28 C -0.124 4.124 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.425 0.575 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.416 0.584 40 H 0.046 0.954 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.090 0.910 46 H 0.014 0.986 47 H 0.054 0.946 48 H 0.248 0.752 49 H -0.007 1.007 50 H 0.049 0.951 51 H 0.058 0.942 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.554 -7.545 -5.025 30.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.033 4.033 4 C 0.289 3.711 5 O -0.462 6.462 6 N -0.363 5.363 7 C 0.015 3.985 8 C -0.176 4.176 9 C 0.298 3.702 10 O -0.471 6.471 11 N -0.362 5.362 12 C 0.051 3.949 13 H 0.083 0.917 14 C -0.215 4.215 15 C -0.092 4.092 16 C -0.153 4.153 17 C 0.013 3.987 18 N -0.334 5.334 19 C -0.392 4.392 20 H 0.085 0.915 21 C -0.246 4.246 22 N -0.582 5.582 23 Si 0.791 3.209 24 H -0.200 1.200 25 H -0.223 1.223 26 H -0.206 1.206 27 C 0.052 3.948 28 C -0.163 4.163 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.263 0.737 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.254 0.746 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.108 0.892 46 H 0.032 0.968 47 H 0.073 0.927 48 H 0.057 0.943 49 H 0.011 0.989 50 H 0.067 0.933 51 H 0.077 0.923 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -28.581 -9.208 -4.935 30.430 hybrid contribution 1.030 1.238 0.022 1.611 sum -27.551 -7.970 -4.912 29.098 Atomic orbital electron populations 1.23028 0.78191 1.04044 1.01801 1.87974 1.22239 1.27192 1.95842 1.22415 0.88369 0.86689 1.05802 1.21111 0.90555 0.84003 0.75387 1.90751 1.75995 1.29116 1.50316 1.45607 1.06098 1.09471 1.75170 1.20801 0.79133 0.96938 1.01662 1.21762 0.89414 0.97799 1.08629 1.21040 0.90622 0.83710 0.74817 1.90745 1.76250 1.28540 1.51565 1.46046 1.06293 1.09535 1.74313 1.20764 0.79779 0.97563 0.96751 0.91702 1.22163 1.01478 1.01697 0.96168 1.21151 0.94912 0.93821 0.99360 1.21975 1.00333 0.93896 0.99110 1.21097 0.83627 0.96707 0.97250 1.44298 1.01207 1.21836 1.66016 1.19495 0.96783 1.15246 1.07629 0.91489 1.25759 1.01786 1.01101 0.95954 1.70173 1.22256 1.51814 1.13988 0.85409 0.78685 0.78852 0.77920 1.19995 1.22325 1.20553 1.20540 0.97721 0.84742 0.91748 1.22065 0.95345 0.97922 1.01008 0.91995 0.89182 0.92045 0.86794 0.86741 0.73654 0.93183 0.93319 0.84600 0.84386 0.74595 0.93473 0.91080 0.91986 0.91507 0.91952 0.89180 0.96845 0.92708 0.94271 0.98892 0.93291 0.92303 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.41 -7.13 10.24 -129.94 -1.33 -8.46 16 3 C 0.05 0.44 6.42 71.24 0.46 0.89 16 4 C 0.50 9.09 7.91 87.66 0.69 9.78 16 5 O -0.58 -18.46 16.50 16.00 0.26 -18.20 16 6 N -0.71 -7.50 5.56 -463.05 -2.57 -10.07 16 7 C 0.14 2.33 4.96 86.38 0.43 2.76 16 8 C -0.14 -1.25 5.81 29.85 0.17 -1.08 16 9 C 0.51 10.18 7.79 87.66 0.68 10.86 16 10 O -0.59 -18.32 15.65 -3.03 -0.05 -18.37 16 11 N -0.71 -12.68 5.00 -442.54 -2.21 -14.90 16 12 C 0.16 3.85 2.40 44.99 0.11 3.96 16 13 H 0.06 1.90 7.58 -2.39 -0.02 1.88 16 14 C -0.16 -3.89 8.78 71.98 0.63 -3.25 16 15 C -0.07 -2.06 2.14 -10.77 -0.02 -2.08 16 16 C -0.11 -3.06 4.81 30.67 0.15 -2.91 16 17 C 0.14 5.13 6.52 86.36 0.56 5.70 16 18 N -0.61 -29.33 2.99 -699.10 -2.09 -31.42 16 19 C -0.26 -14.01 9.58 84.03 0.81 -13.21 16 20 H 0.07 3.47 7.89 -2.91 -0.02 3.45 16 21 C -0.05 -2.80 4.92 84.86 0.42 -2.38 16 22 N -0.94 -55.18 11.20 21.65 0.24 -54.94 16 23 Si 0.96 44.39 29.59 68.60 2.03 46.42 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 27 C 0.18 8.40 5.30 86.36 0.46 8.86 16 28 C -0.12 -4.42 4.96 30.67 0.15 -4.27 16 29 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.23 8.14 -2.39 -0.02 0.22 16 32 H 0.11 0.30 8.14 -2.39 -0.02 0.29 16 33 H 0.11 0.29 8.14 -2.38 -0.02 0.27 16 34 H 0.42 0.23 8.47 -92.71 -0.79 -0.56 16 35 H 0.05 1.13 8.10 -2.39 -0.02 1.12 16 36 H 0.05 1.12 8.10 -2.38 -0.02 1.10 16 37 H 0.14 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.42 4.77 6.84 -92.71 -0.63 4.14 16 40 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.07 1.60 6.46 -2.39 -0.02 1.59 16 42 H 0.06 1.65 6.46 -2.38 -0.02 1.63 16 43 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 44 H 0.06 1.76 6.51 -2.39 -0.02 1.75 16 45 H 0.09 1.62 6.46 -2.38 -0.02 1.60 16 46 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 48 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 49 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 50 H 0.05 2.67 6.06 -2.39 -0.01 2.65 16 51 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 52 H 0.06 2.14 6.51 -2.39 -0.02 2.13 16 Total: -1.00 -86.57 410.74 0.73 -85.84 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -0.49 Total: 9.03 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 6.94 Total: 15.06 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -6.63 Total: -111.33 kcal Atomic # 8 Polarization: -43.91 SS G_CDS: -1.11 Total: -45.02 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -86.57 0.73 -85.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701009701.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.490 kcal (2) G-P(sol) polarization free energy of solvation -86.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds