Wall clock time and date at job start Wed Apr 1 2020 00:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00191 * 2 1 4 4 C 1.53005 * 109.47427 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46994 * 59.99860 * 4 3 2 6 6 C 1.53001 * 109.46862 * 300.00021 * 4 3 2 7 7 C 1.50691 * 109.47238 * 180.02562 * 4 3 2 8 8 O 1.21287 * 120.00240 * 359.97438 * 7 4 3 9 9 N 1.34775 * 120.00000 * 180.02562 * 7 4 3 10 10 C 1.46504 * 119.99964 * 179.97438 * 9 7 4 11 11 C 1.53007 * 109.46876 * 179.97438 * 10 9 7 12 12 H 1.08993 * 112.85038 * 43.80638 * 11 10 9 13 13 C 1.53782 * 113.61290 * 175.00261 * 11 10 9 14 14 C 1.53777 * 87.08357 * 89.19805 * 13 11 10 15 15 H 1.08999 * 113.61456 * 270.80099 * 14 13 11 16 16 N 1.46898 * 113.61168 * 139.98013 * 14 13 11 17 17 C 1.46903 * 110.99849 * 155.00181 * 16 14 13 18 18 C 1.50699 * 109.47398 * 179.97438 * 17 16 14 19 19 O 1.21297 * 119.99867 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00325 * 180.02562 * 18 17 16 21 21 C 1.37092 * 119.99974 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00583 * 0.02562 * 21 20 18 23 23 C 1.38955 * 120.00110 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99820 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00230 * 179.72236 * 23 21 20 26 26 H 1.48497 * 109.47173 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46866 * 120.00218 * 25 23 21 28 28 H 1.48501 * 109.47438 * 240.00339 * 25 23 21 29 29 C 1.53784 * 113.68888 * 272.53505 * 11 10 9 30 30 H 1.08994 * 109.47724 * 59.99572 * 1 2 3 31 31 H 1.09000 * 109.47259 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46585 * 299.99535 * 1 2 3 33 33 H 1.09001 * 109.46899 * 60.00322 * 3 2 1 34 34 H 1.09001 * 109.46982 * 300.00383 * 3 2 1 35 35 H 1.09002 * 109.47121 * 180.02562 * 5 4 3 36 36 H 1.09003 * 109.47583 * 300.00095 * 5 4 3 37 37 H 1.09001 * 109.47243 * 60.00228 * 5 4 3 38 38 H 1.09001 * 109.47196 * 300.00020 * 6 4 3 39 39 H 1.09008 * 109.46879 * 59.99876 * 6 4 3 40 40 H 1.09002 * 109.47207 * 179.97438 * 6 4 3 41 41 H 0.97002 * 120.00097 * 359.97438 * 9 7 4 42 42 H 1.09001 * 109.47073 * 59.99818 * 10 9 7 43 43 H 1.09001 * 109.47031 * 299.99742 * 10 9 7 44 44 H 1.09008 * 113.61069 * 334.64953 * 13 11 10 45 45 H 1.08999 * 113.69171 * 203.76377 * 13 11 10 46 46 H 1.00897 * 111.00408 * 278.95165 * 16 14 13 47 47 H 1.09005 * 109.47310 * 59.99621 * 17 16 14 48 48 H 1.08999 * 109.47201 * 300.00515 * 17 16 14 49 49 H 0.97005 * 119.99841 * 0.02562 * 20 18 17 50 50 H 0.97000 * 120.00377 * 179.97438 * 24 23 21 51 51 H 1.08997 * 113.60676 * 156.32900 * 29 11 10 52 52 H 1.08998 * 113.61403 * 25.42294 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 3.9864 0.4256 -1.2502 6 6 3.9874 0.4252 1.2483 7 6 4.1484 2.5613 0.0000 8 8 3.4355 3.5426 0.0004 9 7 5.4888 2.7022 -0.0009 10 6 6.0847 4.0405 -0.0009 11 6 7.6099 3.9197 -0.0014 12 1 7.9744 3.1638 -0.6969 13 6 8.3348 5.2704 -0.1241 14 6 8.2901 5.3448 1.4112 15 1 7.3901 5.8219 1.7991 16 7 9.5213 5.8765 2.0106 17 6 9.2515 6.4729 3.3258 18 6 10.5350 7.0057 3.9086 19 8 11.5726 6.8987 3.2895 20 7 10.5303 7.6002 5.1182 21 6 11.6980 8.0844 5.6485 22 1 12.6218 7.9899 5.0970 23 6 11.6931 8.6978 6.8954 24 7 10.5690 8.8132 7.5663 25 14 13.2855 9.3507 7.6215 26 1 14.4023 9.0931 6.6772 27 1 13.1611 10.8122 7.8535 28 1 13.5590 8.6663 8.9107 29 6 8.2214 3.8085 1.4053 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 5.0730 0.3392 -1.2504 36 1 3.5431 -0.5702 -1.2502 37 1 3.6644 0.9667 -2.1399 38 1 3.6661 0.9659 2.1385 39 1 3.5440 -0.5707 1.2483 40 1 5.0740 0.3387 1.2477 41 1 6.0589 1.9174 -0.0016 42 1 5.7636 4.5811 0.8895 43 1 5.7624 4.5818 -0.8905 44 1 7.7415 6.0412 -0.6162 45 1 9.3440 5.1907 -0.5283 46 1 10.2296 5.1610 2.0765 47 1 8.8382 5.7145 3.9908 48 1 8.5362 7.2879 3.2153 49 1 9.7007 7.6847 5.6137 50 1 10.5656 9.2411 8.4369 51 1 9.1995 3.3277 1.4193 52 1 7.5366 3.3992 2.1479 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707083717.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:55 Heat of formation + Delta-G solvation = -135.814975 kcal Electronic energy + Delta-G solvation = -29278.036217 eV Core-core repulsion = 25083.758668 eV Total energy + Delta-G solvation = -4194.277549 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.49266 -40.55541 -39.84292 -38.83553 -36.24386 -35.97619 -35.66618 -34.30686 -33.24022 -29.30967 -28.36225 -28.26760 -27.59415 -26.56863 -26.53274 -25.82665 -23.69463 -23.15415 -21.20345 -20.74387 -19.97198 -19.56404 -18.11676 -17.88850 -17.43828 -16.95679 -16.90414 -16.75525 -16.56146 -16.35065 -16.17625 -15.83058 -15.64578 -15.54079 -14.92895 -14.65843 -14.56605 -14.26983 -14.19083 -14.00230 -13.59704 -13.52447 -13.31975 -13.24159 -13.08650 -13.06150 -12.86090 -12.78400 -12.64730 -12.42178 -12.40930 -12.13044 -12.06390 -12.02248 -11.71746 -11.52375 -11.37265 -11.22315 -10.76545 -10.67658 -10.33206 -10.11105 -10.02409 -9.21293 -8.47465 -5.96465 1.36415 1.41724 1.54722 1.56185 1.97294 2.04136 2.29021 2.90040 2.96742 3.19746 3.47863 3.52988 3.56405 3.71543 3.77329 3.79150 3.89568 4.04290 4.14721 4.30112 4.32650 4.42229 4.45216 4.46973 4.51238 4.59608 4.59693 4.61595 4.69938 4.75590 4.79576 4.84007 4.87119 4.89918 4.91644 4.97491 5.04212 5.13646 5.22113 5.29858 5.31225 5.34914 5.40652 5.46350 5.93364 6.12042 6.17524 6.46365 6.48659 6.59211 7.11738 7.16853 7.55248 8.10315 8.70144 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020751 B = 0.001560 C = 0.001495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.012720 B =17939.413200 C =18726.261601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.087 3.913 4 C -0.077 4.077 5 C -0.132 4.132 6 C -0.134 4.134 7 C 0.523 3.477 8 O -0.586 6.586 9 N -0.708 5.708 10 C 0.139 3.861 11 C -0.103 4.103 12 H 0.107 0.893 13 C -0.115 4.115 14 C 0.054 3.946 15 H 0.096 0.904 16 N -0.671 5.671 17 C 0.065 3.935 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.574 5.574 21 C -0.335 4.335 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.270 1.270 29 C -0.156 4.156 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.043 0.957 33 H 0.044 0.956 34 H 0.047 0.953 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.416 0.584 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.347 0.653 47 H 0.065 0.935 48 H 0.099 0.901 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.090 0.910 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.465 -20.862 -16.367 32.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C 0.009 3.991 4 C -0.080 4.080 5 C -0.189 4.189 6 C -0.191 4.191 7 C 0.310 3.690 8 O -0.466 6.466 9 N -0.360 5.360 10 C 0.015 3.985 11 C -0.122 4.122 12 H 0.125 0.875 13 C -0.154 4.154 14 C -0.056 4.056 15 H 0.114 0.886 16 N -0.303 5.303 17 C -0.067 4.067 18 C 0.225 3.775 19 O -0.510 6.510 20 N -0.211 5.211 21 C -0.464 4.464 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.818 3.182 26 H -0.197 1.197 27 H -0.197 1.197 28 H -0.195 1.195 29 C -0.195 4.195 30 H 0.064 0.936 31 H 0.122 0.878 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.253 0.747 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.107 0.893 46 H 0.166 0.834 47 H 0.083 0.917 48 H 0.117 0.883 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.109 0.891 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.218 -19.699 -16.908 31.714 hybrid contribution 0.074 0.020 1.427 1.429 sum -18.144 -19.679 -15.480 30.921 Atomic orbital electron populations 1.22921 0.79579 1.04008 1.00539 1.87766 1.21110 1.27186 1.95524 1.22136 0.92015 0.84407 1.00499 1.20704 0.94419 0.92203 1.00677 1.21793 1.02535 1.00753 0.93865 1.21803 1.02485 1.00806 0.94019 1.20726 0.82652 0.90939 0.74704 1.90706 1.62133 1.42147 1.51585 1.45826 1.06098 1.09909 1.74193 1.21131 0.91605 0.83863 1.01868 1.22242 0.92377 0.99455 0.98131 0.87458 1.23041 1.01028 0.96261 0.95072 1.23317 0.91868 0.94031 0.96341 0.88612 1.60048 1.10192 1.38297 1.21723 1.21562 0.94011 1.00007 0.91163 1.20918 0.91571 0.82913 0.82140 1.90485 1.35579 1.62975 1.61936 1.41954 1.10556 1.51900 1.16672 1.19724 0.88849 1.35982 1.01863 0.90267 1.26060 1.01900 0.97132 0.96203 1.69682 1.27512 1.44229 1.14766 0.84853 0.77309 0.78083 0.77973 1.19720 1.19663 1.19527 1.23710 1.01901 0.96560 0.97309 0.93571 0.87776 0.93804 0.93796 0.93444 0.90065 0.90079 0.92812 0.93232 0.90022 0.90166 0.74682 0.92445 0.91475 0.90963 0.89336 0.83351 0.91746 0.88310 0.77028 0.91303 0.89126 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.40 -5.99 9.35 -148.98 -1.39 -7.38 16 3 C 0.09 1.45 4.09 71.98 0.29 1.74 16 4 C -0.08 -1.06 0.70 -52.93 -0.04 -1.09 16 5 C -0.13 -1.28 8.22 71.98 0.59 -0.68 16 6 C -0.13 -1.47 8.22 71.98 0.59 -0.87 16 7 C 0.52 9.59 6.48 87.65 0.57 10.16 16 8 O -0.59 -16.01 15.98 -3.05 -0.05 -16.06 16 9 N -0.71 -9.33 5.34 -463.04 -2.47 -11.80 16 10 C 0.14 2.14 5.36 86.38 0.46 2.61 16 11 C -0.10 -1.34 3.94 -10.26 -0.04 -1.38 16 12 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 13 C -0.12 -2.08 7.47 31.12 0.23 -1.85 16 14 C 0.05 1.19 3.83 45.44 0.17 1.36 16 15 H 0.10 2.09 7.45 -2.39 -0.02 2.07 16 16 N -0.67 -20.68 6.24 -492.85 -3.08 -23.76 16 17 C 0.07 2.25 6.01 85.56 0.51 2.76 16 18 C 0.44 21.02 7.82 87.66 0.69 21.71 16 19 O -0.62 -34.79 15.78 -3.08 -0.05 -34.84 16 20 N -0.57 -29.81 5.29 -306.98 -1.62 -31.43 16 21 C -0.33 -19.21 9.68 84.04 0.81 -18.39 16 22 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 23 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 24 N -0.92 -50.09 13.05 21.66 0.28 -49.81 16 25 Si 0.99 43.15 29.55 68.60 2.03 45.18 16 26 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 28 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 29 C -0.16 -2.51 7.23 31.12 0.23 -2.29 16 30 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.04 0.84 8.10 -2.39 -0.02 0.82 16 34 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 35 H 0.08 0.45 7.56 -2.39 -0.02 0.43 16 36 H 0.08 0.77 7.68 -2.39 -0.02 0.75 16 37 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.08 0.87 7.68 -2.38 -0.02 0.85 16 40 H 0.08 0.56 7.57 -2.39 -0.02 0.54 16 41 H 0.42 3.07 7.31 -92.71 -0.68 2.39 16 42 H 0.06 1.09 7.40 -2.39 -0.02 1.07 16 43 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.07 1.29 8.10 -2.38 -0.02 1.27 16 45 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.35 11.04 7.89 -89.70 -0.71 10.33 16 47 H 0.06 1.96 8.14 -2.38 -0.02 1.95 16 48 H 0.10 3.17 8.13 -2.39 -0.02 3.15 16 49 H 0.40 19.58 7.90 -92.70 -0.73 18.84 16 50 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 51 H 0.09 1.46 7.82 -2.39 -0.02 1.44 16 52 H 0.07 1.12 8.10 -2.39 -0.02 1.10 16 Total: -1.00 -73.88 423.02 -0.75 -74.63 By element: Atomic # 1 Polarization: 41.41 SS G_CDS: -1.19 Total: 40.23 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: 6.79 Total: 15.04 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -6.89 Total: -116.80 kcal Atomic # 8 Polarization: -56.79 SS G_CDS: -1.49 Total: -58.28 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -73.88 -0.75 -74.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707083717.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.184 kcal (2) G-P(sol) polarization free energy of solvation -73.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds