Wall clock time and date at job start Wed Apr 1 2020 00:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00386 * 2 1 4 4 C 1.50695 * 109.47322 * 179.97438 * 3 2 1 5 5 O 1.21287 * 120.00122 * 0.02562 * 4 3 2 6 6 N 1.34774 * 119.99939 * 180.02562 * 4 3 2 7 7 C 1.46928 * 120.63364 * 354.43344 * 6 4 3 8 8 C 1.53185 * 108.77691 * 126.39068 * 7 6 4 9 9 C 1.53042 * 109.31169 * 54.63779 * 8 7 6 10 10 C 1.53041 * 109.54053 * 298.63613 * 9 8 7 11 11 H 1.08998 * 109.49651 * 181.31279 * 10 9 8 12 12 C 1.52998 * 109.49773 * 301.37990 * 10 9 8 13 13 C 1.46936 * 120.60339 * 174.41923 * 6 4 3 14 14 H 1.09003 * 109.56453 * 113.80671 * 13 6 4 15 15 C 1.52995 * 109.61556 * 353.37460 * 13 6 4 16 16 C 1.53001 * 109.46969 * 182.08643 * 15 13 6 17 17 N 1.46903 * 109.47151 * 185.07858 * 16 15 13 18 18 C 1.46898 * 111.00082 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.47412 * 179.97438 * 18 17 16 20 20 O 1.21298 * 119.99881 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00444 * 179.97438 * 19 18 17 22 22 C 1.37095 * 120.00035 * 180.02562 * 21 19 18 23 23 H 1.08000 * 120.00203 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99794 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00050 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99910 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47200 * 59.99858 * 26 24 22 28 28 H 1.48494 * 109.47035 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.46768 * 300.00096 * 26 24 22 30 30 H 1.09000 * 109.46992 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47104 * 299.99665 * 1 2 3 32 32 H 1.09002 * 109.46923 * 59.99751 * 1 2 3 33 33 H 1.08999 * 109.46919 * 59.99914 * 3 2 1 34 34 H 1.08996 * 109.46937 * 299.99941 * 3 2 1 35 35 H 1.09004 * 109.58169 * 6.60730 * 7 6 4 36 36 H 1.08995 * 109.70426 * 246.25645 * 7 6 4 37 37 H 1.09004 * 109.49988 * 294.69046 * 8 7 6 38 38 H 1.08992 * 109.52977 * 174.60626 * 8 7 6 39 39 H 1.08998 * 109.46571 * 178.61481 * 9 8 7 40 40 H 1.09003 * 109.46019 * 58.65505 * 9 8 7 41 41 H 1.09000 * 109.47380 * 59.93473 * 12 10 9 42 42 H 1.09005 * 109.47362 * 179.97438 * 12 10 9 43 43 H 1.09001 * 109.47041 * 299.93177 * 12 10 9 44 44 H 1.09004 * 109.47490 * 302.08052 * 15 13 6 45 45 H 1.08997 * 109.47638 * 62.08593 * 15 13 6 46 46 H 1.09008 * 109.46979 * 305.06745 * 16 15 13 47 47 H 1.08999 * 109.47863 * 65.07111 * 16 15 13 48 48 H 1.00893 * 111.00242 * 56.03805 * 17 16 15 49 49 H 1.09003 * 109.46863 * 299.99732 * 18 17 16 50 50 H 1.09003 * 109.47397 * 59.99369 * 18 17 16 51 51 H 0.96994 * 119.99754 * 359.97438 * 21 19 18 52 52 H 0.97000 * 119.99696 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0914 0.0006 6 7 4.2765 2.2967 0.0013 7 6 3.6643 3.6268 -0.1213 8 6 4.1442 4.4996 1.0425 9 6 5.6744 4.5119 1.0684 10 6 6.1942 3.0890 1.2855 11 1 7.2833 3.1019 1.3271 12 6 5.6393 2.5376 2.6004 13 6 5.7374 2.1995 0.1249 14 1 6.2053 2.5368 -0.8000 15 6 6.1338 0.7483 0.4040 16 6 7.6506 0.6595 0.5837 17 7 8.0447 -0.7480 0.7306 18 6 9.4980 -0.8723 0.9050 19 6 9.8637 -2.3268 1.0527 20 8 8.9988 -3.1764 1.0158 21 7 11.1519 -2.6837 1.2247 22 6 11.4845 -4.0069 1.3585 23 1 10.7143 -4.7633 1.3265 24 6 12.8126 -4.3748 1.5364 25 7 13.7498 -3.4545 1.5759 26 14 13.2660 -6.1779 1.7181 27 1 12.8486 -6.9184 0.5004 28 1 14.7352 -6.3036 1.8939 29 1 12.5747 -6.7451 2.9036 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 2.5788 3.5340 -0.0851 36 1 3.9608 4.0821 -1.0661 37 1 3.7678 4.0933 1.9814 38 1 3.7744 5.5165 0.9120 39 1 6.0187 5.1521 1.8807 40 1 6.0505 4.8952 0.1199 41 1 4.5502 2.5249 2.5583 42 1 6.0094 1.5240 2.7544 43 1 5.9637 3.1715 3.4258 44 1 5.6396 0.4051 1.3130 45 1 5.8298 0.1210 -0.4339 46 1 8.1454 1.0861 -0.2889 47 1 7.9441 1.2140 1.4751 48 1 7.7268 -1.2963 -0.0544 49 1 10.0053 -0.4563 0.0344 50 1 9.8047 -0.3283 1.7984 51 1 11.8437 -2.0044 1.2531 52 1 14.6769 -3.7114 1.6997 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707134153.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:41 Heat of formation + Delta-G solvation = -101.040391 kcal Electronic energy + Delta-G solvation = -30673.442614 eV Core-core repulsion = 26480.673004 eV Total energy + Delta-G solvation = -4192.769610 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.10309 -38.60260 -38.14560 -37.34830 -35.88943 -34.07699 -33.71838 -32.85756 -31.12696 -29.84595 -29.07956 -27.26054 -26.46590 -26.01183 -24.68645 -24.00640 -22.82596 -21.25059 -20.52392 -19.12873 -18.71671 -17.80530 -17.40102 -16.88673 -16.70402 -16.20091 -15.80142 -15.71212 -15.12431 -15.10005 -14.80931 -14.59865 -14.39861 -14.25733 -14.11569 -13.70821 -13.50327 -13.37601 -13.21318 -12.93019 -12.66446 -12.56214 -12.29607 -12.03581 -11.93277 -11.69557 -11.61292 -11.44059 -11.39632 -11.30206 -11.24841 -10.96380 -10.80932 -10.73767 -10.42401 -10.37648 -10.15665 -10.13103 -9.41443 -9.06755 -8.79552 -8.31631 -7.89697 -7.83304 -6.33552 -3.73852 2.37415 2.44169 3.26620 3.31020 3.36359 3.52247 4.01824 4.14489 4.23771 4.27539 4.44502 4.45951 4.55910 4.62176 4.65125 4.74957 4.82873 4.93459 4.94829 4.98791 5.09017 5.22042 5.27084 5.30813 5.32365 5.33803 5.39298 5.43522 5.47151 5.48704 5.59410 5.62923 5.79754 5.82686 5.87229 5.91351 5.93703 6.11115 6.16926 6.20743 6.38308 6.42456 6.64014 6.75043 7.14487 7.44077 7.63100 7.87171 8.04004 8.15729 8.71241 9.26783 9.63968 10.16553 10.84397 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015429 B = 0.002100 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.370972 B =13332.402945 C =14802.525727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.042 3.958 4 C 0.511 3.489 5 O -0.494 6.494 6 N -0.608 5.608 7 C 0.107 3.893 8 C -0.139 4.139 9 C -0.115 4.115 10 C -0.106 4.106 11 H 0.086 0.914 12 C -0.149 4.149 13 C 0.157 3.843 14 H 0.071 0.929 15 C -0.112 4.112 16 C 0.054 3.946 17 N -0.666 5.666 18 C 0.051 3.949 19 C 0.442 3.558 20 O -0.580 6.580 21 N -0.566 5.566 22 C -0.297 4.297 23 H 0.102 0.898 24 C 0.021 3.979 25 N -0.904 5.904 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.092 0.908 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.052 0.948 44 H 0.084 0.916 45 H 0.093 0.907 46 H 0.020 0.980 47 H 0.067 0.933 48 H 0.350 0.650 49 H 0.041 0.959 50 H 0.084 0.916 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.206 23.454 -3.354 33.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C -0.038 4.038 4 C 0.297 3.703 5 O -0.367 6.367 6 N -0.345 5.345 7 C -0.016 4.016 8 C -0.177 4.177 9 C -0.153 4.153 10 C -0.125 4.125 11 H 0.104 0.896 12 C -0.206 4.206 13 C 0.054 3.946 14 H 0.089 0.911 15 C -0.149 4.149 16 C -0.076 4.076 17 N -0.299 5.299 18 C -0.081 4.081 19 C 0.227 3.773 20 O -0.464 6.464 21 N -0.204 5.204 22 C -0.427 4.427 23 H 0.120 0.880 24 C -0.181 4.181 25 N -0.546 5.546 26 Si 0.758 3.242 27 H -0.200 1.200 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.110 0.890 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.071 0.929 44 H 0.102 0.898 45 H 0.111 0.889 46 H 0.038 0.962 47 H 0.086 0.914 48 H 0.170 0.830 49 H 0.059 0.941 50 H 0.102 0.898 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.329 22.032 -2.683 32.200 hybrid contribution 0.843 0.296 -0.739 1.159 sum -22.487 22.328 -3.423 31.873 Atomic orbital electron populations 1.22840 0.80436 1.03467 0.99901 1.88060 1.19697 1.25050 1.95330 1.22334 0.92427 0.87014 1.01999 1.20206 0.88357 0.84505 0.77222 1.90862 1.72803 1.26527 1.46497 1.48026 1.07019 1.05594 1.73852 1.21749 0.97858 0.82944 0.99068 1.21975 0.96917 0.99741 0.99043 1.21555 0.94988 0.96619 1.02114 1.21588 1.00964 0.94388 0.95560 0.89610 1.21911 1.00981 1.01885 0.95854 1.21325 0.78366 0.97303 0.97584 0.91111 1.22152 0.93924 0.93392 1.05470 1.22142 0.95892 0.90137 0.99428 1.60006 1.11859 1.08296 1.49708 1.21662 0.88925 0.96619 1.00932 1.19869 0.83511 0.89621 0.84257 1.90535 1.48433 1.51869 1.55533 1.41855 1.06055 1.08736 1.63711 1.19664 0.93030 0.83726 1.46267 0.88012 1.25252 0.95357 0.99933 0.97521 1.69609 1.01185 1.33382 1.50413 0.85917 0.77026 0.82193 0.79072 1.19953 1.21045 1.19907 0.88960 0.93889 0.93935 0.90578 0.90682 0.90138 0.91044 0.90924 0.90790 0.91494 0.91783 0.92782 0.91372 0.92895 0.89764 0.88904 0.96184 0.91431 0.83047 0.94132 0.89812 0.77508 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.36 -4.09 10.24 -55.14 -0.56 -4.66 16 3 C 0.04 0.35 4.77 36.00 0.17 0.52 16 4 C 0.51 5.82 7.61 -10.99 -0.08 5.74 16 5 O -0.49 -8.03 12.06 -14.36 -0.17 -8.21 16 6 N -0.61 -5.31 2.41 -165.22 -0.40 -5.71 16 7 C 0.11 0.53 6.35 -3.71 -0.02 0.51 16 8 C -0.14 -0.64 5.74 -26.61 -0.15 -0.80 16 9 C -0.12 -0.67 5.43 -26.69 -0.14 -0.82 16 10 C -0.11 -0.87 2.24 -90.50 -0.20 -1.07 16 11 H 0.09 0.72 6.86 -51.93 -0.36 0.36 16 12 C -0.15 -1.38 8.17 37.16 0.30 -1.08 16 13 C 0.16 1.54 2.74 -67.59 -0.19 1.35 16 14 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 15 C -0.11 -1.51 2.90 -26.73 -0.08 -1.59 16 16 C 0.05 0.76 5.10 -3.82 -0.02 0.74 16 17 N -0.67 -12.33 6.13 -115.05 -0.70 -13.04 16 18 C 0.05 0.99 6.17 -4.98 -0.03 0.96 16 19 C 0.44 11.19 7.82 -10.99 -0.09 11.11 16 20 O -0.58 -16.91 15.78 5.54 0.09 -16.83 16 21 N -0.57 -15.12 5.29 -10.96 -0.06 -15.18 16 22 C -0.30 -8.66 9.68 -14.93 -0.14 -8.80 16 23 H 0.10 3.11 7.16 -52.49 -0.38 2.73 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -25.37 13.05 55.50 0.72 -24.65 16 26 Si 0.93 21.83 29.55 -169.99 -5.02 16.80 16 27 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.08 0.45 7.92 -51.93 -0.41 0.04 16 34 H 0.08 0.42 7.72 -51.93 -0.40 0.02 16 35 H 0.08 0.25 5.93 -51.93 -0.31 -0.06 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.39 6.34 -51.93 -0.33 0.06 16 38 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.05 0.49 5.97 -51.93 -0.31 0.18 16 42 H 0.07 0.80 6.13 -51.93 -0.32 0.48 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.08 1.33 5.53 -51.93 -0.29 1.04 16 45 H 0.09 1.49 6.26 -51.93 -0.32 1.16 16 46 H 0.02 0.26 8.14 -51.92 -0.42 -0.16 16 47 H 0.07 0.89 6.59 -51.93 -0.34 0.54 16 48 H 0.35 6.88 8.43 -39.30 -0.33 6.55 16 49 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 51 H 0.39 9.94 7.90 -40.82 -0.32 9.62 16 52 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 401.78 15.07 6.05 6.05 Total: -1.00 -36.25 401.78 -8.34 -44.59 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -8.62 Total: 12.24 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 0.34 Total: 8.57 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.44 Total: -58.57 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.65 Total: -29.69 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.25 -8.34 -44.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707134153.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.454 kcal (2) G-P(sol) polarization free energy of solvation -36.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds