Wall clock time and date at job start Wed Apr 1 2020 00:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00219 * 2 1 4 4 C 1.50701 * 109.47360 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99606 * 359.97438 * 4 3 2 6 6 N 1.34771 * 119.99723 * 179.97438 * 4 3 2 7 7 C 1.46925 * 120.63755 * 6.40240 * 6 4 3 8 8 C 1.53188 * 108.77784 * 233.63218 * 7 6 4 9 9 C 1.53042 * 109.31286 * 305.36041 * 8 7 6 10 10 C 1.53040 * 109.53279 * 61.36827 * 9 8 7 11 11 H 1.08996 * 109.50133 * 58.58947 * 10 9 8 12 12 C 1.53007 * 109.52139 * 178.66553 * 10 9 8 13 13 C 1.46929 * 120.62698 * 186.42969 * 6 4 3 14 14 H 1.09004 * 109.70456 * 246.22831 * 13 6 4 15 15 C 1.53006 * 109.58849 * 6.57824 * 13 6 4 16 16 C 1.53004 * 109.46605 * 65.84424 * 15 13 6 17 17 N 1.46904 * 109.46778 * 175.74016 * 16 15 13 18 18 C 1.46890 * 110.99863 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.47110 * 180.02562 * 18 17 16 20 20 O 1.21294 * 120.00220 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00077 * 180.02562 * 19 18 17 22 22 C 1.37098 * 120.00130 * 179.72335 * 21 19 18 23 23 H 1.08003 * 120.00280 * 0.27690 * 22 21 19 24 24 C 1.38950 * 120.00331 * 180.27609 * 22 21 19 25 25 N 1.31414 * 119.99775 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00277 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46778 * 59.99706 * 26 24 22 28 28 H 1.48500 * 109.47199 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.46988 * 300.00121 * 26 24 22 30 30 H 1.08999 * 109.47404 * 300.00832 * 1 2 3 31 31 H 1.09003 * 109.46563 * 60.00518 * 1 2 3 32 32 H 1.08999 * 109.47182 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47228 * 59.98874 * 3 2 1 34 34 H 1.09007 * 109.46543 * 299.99487 * 3 2 1 35 35 H 1.08999 * 109.58514 * 113.83814 * 7 6 4 36 36 H 1.08999 * 109.58087 * 353.42488 * 7 6 4 37 37 H 1.09003 * 109.49489 * 185.41272 * 8 7 6 38 38 H 1.09002 * 109.49984 * 65.31920 * 8 7 6 39 39 H 1.08995 * 109.46077 * 301.34658 * 9 8 7 40 40 H 1.08998 * 109.44704 * 181.38006 * 9 8 7 41 41 H 1.09003 * 109.47220 * 179.85469 * 12 10 9 42 42 H 1.08996 * 109.46754 * 299.85569 * 12 10 9 43 43 H 1.09003 * 109.47065 * 59.85454 * 12 10 9 44 44 H 1.08997 * 109.46717 * 305.84483 * 15 13 6 45 45 H 1.08992 * 109.47001 * 185.84274 * 15 13 6 46 46 H 1.08996 * 109.46984 * 55.73907 * 16 15 13 47 47 H 1.09001 * 109.47162 * 295.74004 * 16 15 13 48 48 H 1.00897 * 110.99844 * 303.95655 * 17 16 15 49 49 H 1.09005 * 109.47558 * 59.99823 * 18 17 16 50 50 H 1.09000 * 109.47216 * 299.99713 * 18 17 16 51 51 H 0.96996 * 120.00289 * 359.97438 * 21 19 18 52 52 H 0.97001 * 120.00062 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 0.0006 5 8 4.0341 0.0915 0.0015 6 7 4.2764 2.2968 0.0002 7 6 3.6657 3.6258 0.1401 8 6 4.1322 4.5076 -1.0224 9 6 5.6619 4.5204 -1.0659 10 6 6.1790 3.0992 -1.3001 11 1 5.7725 2.7135 -2.2349 12 6 7.7071 3.1172 -1.3767 13 6 5.7358 2.2013 -0.1408 14 1 6.2164 2.5304 0.7806 15 6 6.1290 0.7522 -0.4349 16 6 5.5822 0.3434 -1.8042 17 7 6.0451 -1.0118 -2.1315 18 6 5.5378 -1.4391 -3.4422 19 6 6.0317 -2.8308 -3.7426 20 8 6.7373 -3.4096 -2.9437 21 7 5.6902 -3.4319 -4.8996 22 6 6.1441 -4.6958 -5.1754 23 1 6.7717 -5.2116 -4.4637 24 6 5.7968 -5.3134 -6.3707 25 7 5.0336 -4.6857 -7.2370 26 14 6.4148 -7.0358 -6.7462 27 1 5.9288 -7.9743 -5.7030 28 1 5.9065 -7.4656 -8.0737 29 1 7.8997 -7.0368 -6.7601 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.6885 1.8464 0.8899 34 1 1.6887 1.8463 -0.8901 35 1 3.9754 4.0725 1.0849 36 1 2.5800 3.5332 0.1159 37 1 3.7638 5.5235 -0.8789 38 1 3.7447 4.1087 -1.9599 39 1 6.0490 4.8963 -0.1189 40 1 5.9965 5.1669 -1.8772 41 1 8.0746 2.1043 -1.5410 42 1 8.0219 3.7562 -2.2017 43 1 8.1132 3.5041 -0.4421 44 1 5.7123 0.0998 0.3324 45 1 7.2154 0.6637 -0.4363 46 1 5.9388 1.0419 -2.5611 47 1 4.4926 0.3592 -1.7797 48 1 7.0519 -1.0682 -2.0971 49 1 5.8937 -0.7530 -4.2109 50 1 4.4479 -1.4358 -3.4287 51 1 5.1263 -2.9690 -5.5387 52 1 4.7908 -5.1169 -8.0713 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707134175.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:43 Heat of formation + Delta-G solvation = -112.417737 kcal Electronic energy + Delta-G solvation = -31428.966471 eV Core-core repulsion = 27235.703502 eV Total energy + Delta-G solvation = -4193.262968 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.98441 -40.16449 -39.15826 -38.10458 -37.04993 -35.94038 -34.92488 -33.69265 -33.26514 -30.95859 -29.80955 -28.21096 -27.28904 -26.84467 -26.07511 -24.84677 -23.71716 -22.27529 -21.30799 -21.10300 -19.97153 -19.79469 -18.21429 -17.86843 -17.51590 -17.37689 -17.01984 -16.54799 -16.28896 -16.17334 -16.01346 -15.90153 -15.70044 -15.37634 -15.08574 -14.61171 -14.59027 -14.23625 -14.16885 -13.92671 -13.76448 -13.52674 -13.40279 -13.23228 -13.11208 -12.92933 -12.84064 -12.61856 -12.46484 -12.43448 -12.26937 -12.12858 -11.91936 -11.78590 -11.62448 -11.53050 -11.45742 -11.16635 -10.71968 -10.38204 -10.04699 -9.81570 -9.51261 -9.14091 -8.48396 -5.97935 1.38425 1.39547 1.51562 1.63686 1.80759 2.00880 2.28107 2.92923 3.01837 3.17690 3.47939 3.64719 3.77644 3.83350 3.94289 4.08851 4.14003 4.18829 4.24993 4.26149 4.30874 4.37387 4.42916 4.47095 4.48179 4.56940 4.57235 4.57797 4.63950 4.71188 4.82903 4.86842 4.87785 4.92970 4.99182 5.13607 5.19176 5.24978 5.25967 5.35026 5.38119 5.45930 5.56423 5.75341 5.91423 6.11677 6.17041 6.47905 6.50686 6.57733 7.09358 7.33536 7.51754 8.07694 8.69203 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012245 B = 0.002641 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.014745 B =10598.652927 C =11999.230488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.043 3.957 4 C 0.491 3.509 5 O -0.530 6.530 6 N -0.606 5.606 7 C 0.100 3.900 8 C -0.133 4.133 9 C -0.111 4.111 10 C -0.105 4.105 11 H 0.062 0.938 12 C -0.145 4.145 13 C 0.163 3.837 14 H 0.086 0.914 15 C -0.122 4.122 16 C 0.081 3.919 17 N -0.679 5.679 18 C 0.072 3.928 19 C 0.438 3.562 20 O -0.622 6.622 21 N -0.571 5.571 22 C -0.338 4.338 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.921 5.921 26 Si 0.996 3.004 27 H -0.273 1.273 28 H -0.267 1.267 29 H -0.270 1.270 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.043 0.957 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.055 0.945 46 H 0.023 0.977 47 H 0.066 0.934 48 H 0.337 0.663 49 H 0.061 0.939 50 H 0.088 0.912 51 H 0.396 0.604 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.942 28.426 13.727 32.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.328 6.328 3 C -0.036 4.036 4 C 0.279 3.721 5 O -0.407 6.407 6 N -0.342 5.342 7 C -0.021 4.021 8 C -0.171 4.171 9 C -0.149 4.149 10 C -0.125 4.125 11 H 0.080 0.920 12 C -0.203 4.203 13 C 0.060 3.940 14 H 0.104 0.896 15 C -0.160 4.160 16 C -0.047 4.047 17 N -0.311 5.311 18 C -0.061 4.061 19 C 0.226 3.774 20 O -0.508 6.508 21 N -0.208 5.208 22 C -0.467 4.467 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.819 3.181 27 H -0.198 1.198 28 H -0.191 1.191 29 H -0.195 1.195 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.125 0.875 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.073 0.927 46 H 0.041 0.959 47 H 0.084 0.916 48 H 0.156 0.844 49 H 0.079 0.921 50 H 0.106 0.894 51 H 0.230 0.770 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.701 26.924 14.418 31.497 hybrid contribution 0.374 -0.265 -1.357 1.433 sum -7.327 26.659 13.061 30.577 Atomic orbital electron populations 1.22987 0.78614 1.03765 1.01602 1.88022 1.21907 1.27142 1.95704 1.22491 0.90290 0.86423 1.04428 1.20846 0.89864 0.84403 0.76998 1.90866 1.73345 1.28744 1.47750 1.48102 1.06677 1.06655 1.72723 1.22091 0.99238 0.80846 0.99921 1.21936 0.95914 1.01030 0.98245 1.21577 0.95637 0.94632 1.03010 1.21623 0.96629 0.96393 0.97832 0.91959 1.21800 0.94134 1.01608 1.02746 1.21259 0.79416 0.94661 0.98699 0.89628 1.22083 0.99191 0.96102 0.98597 1.22269 1.00400 0.86183 0.95811 1.59925 1.15915 1.26733 1.28513 1.21425 1.00784 0.92298 0.91609 1.20794 0.84531 0.89657 0.82433 1.90473 1.43123 1.67991 1.49252 1.41905 1.46043 1.15490 1.17409 1.19666 1.30489 0.92818 1.03739 0.90405 1.26099 0.96528 1.03880 0.94749 1.69677 1.36391 1.40066 1.10020 0.84950 0.78611 0.76735 0.77772 1.19804 1.19080 1.19501 0.91736 0.92434 0.89651 0.87495 0.88371 0.89275 0.87929 0.88075 0.92376 0.90552 0.90994 0.93828 0.91721 0.91299 0.89286 0.92663 0.95871 0.91555 0.84438 0.92095 0.89416 0.77047 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.41 -10.45 10.24 -129.94 -1.33 -11.78 16 3 C 0.04 0.74 4.78 71.24 0.34 1.08 16 4 C 0.49 11.76 6.37 87.66 0.56 12.31 16 5 O -0.53 -18.76 10.36 16.00 0.17 -18.60 16 6 N -0.61 -10.22 2.94 -795.03 -2.34 -12.55 16 7 C 0.10 0.75 6.35 86.36 0.55 1.29 16 8 C -0.13 -0.89 6.08 30.67 0.19 -0.70 16 9 C -0.11 -1.01 5.17 30.62 0.16 -0.85 16 10 C -0.11 -1.61 1.99 -10.72 -0.02 -1.63 16 11 H 0.06 1.21 5.93 -2.39 -0.01 1.20 16 12 C -0.15 -2.17 8.97 71.98 0.65 -1.53 16 13 C 0.16 3.06 2.66 44.97 0.12 3.18 16 14 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 15 C -0.12 -3.42 4.34 30.60 0.13 -3.29 16 16 C 0.08 2.62 4.37 86.30 0.38 2.99 16 17 N -0.68 -27.75 6.12 -517.94 -3.17 -30.92 16 18 C 0.07 3.04 6.17 85.56 0.53 3.56 16 19 C 0.44 23.74 7.82 87.66 0.69 24.43 16 20 O -0.62 -38.54 15.78 -3.07 -0.05 -38.59 16 21 N -0.57 -32.19 5.29 -306.98 -1.62 -33.81 16 22 C -0.34 -20.53 9.68 84.04 0.81 -19.71 16 23 H 0.08 5.02 7.16 -2.91 -0.02 5.00 16 24 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 25 N -0.92 -52.01 13.05 21.66 0.28 -51.73 16 26 Si 1.00 44.98 29.55 68.60 2.03 47.00 16 27 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 28 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 29 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.11 1.06 7.68 -2.39 -0.02 1.05 16 34 H 0.10 1.19 7.95 -2.38 -0.02 1.17 16 35 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.10 0.35 5.93 -2.39 -0.01 0.33 16 37 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.06 0.54 8.14 -2.39 -0.02 0.53 16 39 H 0.08 0.54 8.14 -2.39 -0.02 0.53 16 40 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.04 0.82 6.75 -2.39 -0.02 0.80 16 42 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.09 3.15 5.58 -30.76 -0.17 2.98 16 45 H 0.05 1.50 6.93 -2.39 -0.02 1.48 16 46 H 0.02 0.68 5.97 -2.39 -0.01 0.67 16 47 H 0.07 2.34 5.04 -2.39 -0.01 2.33 16 48 H 0.34 13.96 8.43 -89.70 -0.76 13.20 16 49 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 50 H 0.09 3.63 8.14 -2.39 -0.02 3.61 16 51 H 0.40 21.15 7.90 -92.71 -0.73 20.42 16 52 H 0.28 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -83.34 401.30 0.05 -83.29 By element: Atomic # 1 Polarization: 45.85 SS G_CDS: -0.71 Total: 45.14 kcal Atomic # 6 Polarization: 15.75 SS G_CDS: 6.79 Total: 22.54 kcal Atomic # 7 Polarization: -122.16 SS G_CDS: -6.85 Total: -129.01 kcal Atomic # 8 Polarization: -67.75 SS G_CDS: -1.21 Total: -68.97 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -83.34 0.05 -83.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707134175.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.125 kcal (2) G-P(sol) polarization free energy of solvation -83.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds