Wall clock time and date at job start Wed Apr 1 2020 00:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42900 * 113.99748 * 2 1 4 4 C 1.50708 * 109.47150 * 180.02562 * 3 2 1 5 5 O 1.21275 * 119.99785 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99586 * 180.02562 * 4 3 2 7 7 C 1.46924 * 120.63571 * 354.26668 * 6 4 3 8 8 C 1.53190 * 108.77185 * 126.41392 * 7 6 4 9 9 C 1.53042 * 109.31363 * 54.64126 * 8 7 6 10 10 C 1.53048 * 109.53443 * 298.63347 * 9 8 7 11 11 H 1.08994 * 109.49377 * 301.37639 * 10 9 8 12 12 C 1.52999 * 109.49394 * 181.31601 * 10 9 8 13 13 C 1.46931 * 120.62259 * 174.29514 * 6 4 3 14 14 H 1.09002 * 109.58379 * 113.79817 * 13 6 4 15 15 C 1.52997 * 109.58869 * 353.37233 * 13 6 4 16 16 C 1.52997 * 109.46924 * 295.67518 * 15 13 6 17 17 N 1.46902 * 109.46956 * 173.28316 * 16 15 13 18 18 C 1.46897 * 111.00090 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47361 * 180.02562 * 18 17 16 20 20 O 1.21292 * 119.99888 * 359.97438 * 19 18 17 21 21 N 1.34775 * 120.00622 * 179.97438 * 19 18 17 22 22 C 1.37087 * 120.00517 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00061 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99950 * 179.97438 * 22 21 19 25 25 N 1.31403 * 120.00340 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99773 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47400 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.47072 * 120.00111 * 26 24 22 29 29 H 1.48495 * 109.47273 * 240.00204 * 26 24 22 30 30 H 1.09000 * 109.47258 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47106 * 299.99241 * 1 2 3 32 32 H 1.08996 * 109.47881 * 60.00031 * 1 2 3 33 33 H 1.08991 * 109.47760 * 60.00319 * 3 2 1 34 34 H 1.09007 * 109.47377 * 300.00302 * 3 2 1 35 35 H 1.09002 * 109.58309 * 6.63163 * 7 6 4 36 36 H 1.08995 * 109.58703 * 246.20493 * 7 6 4 37 37 H 1.08996 * 109.50417 * 294.68556 * 8 7 6 38 38 H 1.09004 * 109.49809 * 174.58627 * 8 7 6 39 39 H 1.08997 * 109.46491 * 178.61025 * 9 8 7 40 40 H 1.09001 * 109.46139 * 58.64694 * 9 8 7 41 41 H 1.09001 * 109.47400 * 60.00060 * 12 10 9 42 42 H 1.09006 * 109.46710 * 180.02562 * 12 10 9 43 43 H 1.09002 * 109.47105 * 299.99696 * 12 10 9 44 44 H 1.08996 * 109.47540 * 55.67963 * 15 13 6 45 45 H 1.08999 * 109.47023 * 175.67787 * 15 13 6 46 46 H 1.08994 * 109.47531 * 293.27936 * 16 15 13 47 47 H 1.09000 * 109.47521 * 53.28609 * 16 15 13 48 48 H 1.00896 * 111.00398 * 56.04415 * 17 16 15 49 49 H 1.09009 * 109.46848 * 299.99618 * 18 17 16 50 50 H 1.08996 * 109.47381 * 59.99447 * 18 17 16 51 51 H 0.97006 * 119.99460 * 359.97438 * 21 19 18 52 52 H 0.96998 * 120.00210 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0340 0.0917 -0.0006 6 7 4.2763 2.2970 -0.0002 7 6 3.6642 3.6268 -0.1254 8 6 4.1427 4.5013 1.0378 9 6 5.6728 4.5138 1.0655 10 6 6.1924 3.0911 1.2852 11 1 5.7960 2.6997 2.2220 12 6 7.7211 3.1094 1.3455 13 6 5.7371 2.2006 0.1249 14 1 6.2060 2.5371 -0.7998 15 6 6.1332 0.7497 0.4057 16 6 5.5685 0.3202 1.7612 17 7 5.8094 -1.1153 1.9594 18 6 5.2788 -1.5645 3.2535 19 6 5.5446 -3.0383 3.4212 20 8 6.1190 -3.6542 2.5483 21 7 5.1440 -3.6723 4.5410 22 6 5.3852 -5.0132 4.6933 23 1 5.8967 -5.5615 3.9160 24 6 4.9726 -5.6666 5.8481 25 7 4.3507 -4.9994 6.7941 26 14 5.3021 -7.4935 6.0559 27 1 6.0125 -8.0079 4.8575 28 1 6.1429 -7.7111 7.2605 29 1 4.0134 -8.2139 6.2151 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8901 32 1 -0.3635 0.5138 -0.8899 33 1 1.6886 1.8464 0.8899 34 1 1.6884 1.8465 -0.8900 35 1 2.5787 3.5341 -0.0904 36 1 3.9641 4.0795 -1.0705 37 1 3.7652 4.0964 1.9767 38 1 3.7730 5.5180 0.9046 39 1 6.0161 5.1552 1.8772 40 1 6.0501 4.8956 0.1168 41 1 8.0446 3.7454 2.1695 42 1 8.0906 2.0958 1.5015 43 1 8.1170 3.4998 0.4080 44 1 5.7311 0.1054 -0.3761 45 1 7.2199 0.6664 0.4220 46 1 6.0594 0.8838 2.5545 47 1 4.4964 0.5155 1.7867 48 1 6.7913 -1.3321 1.8759 49 1 5.7675 -1.0138 4.0574 50 1 4.2048 -1.3822 3.2889 51 1 4.6849 -3.1797 5.2393 52 1 4.0624 -5.4556 7.6000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707134176.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:49 Heat of formation + Delta-G solvation = -84.490152 kcal Electronic energy + Delta-G solvation = -31545.754176 eV Core-core repulsion = 27353.702239 eV Total energy + Delta-G solvation = -4192.051938 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.13952 -38.36093 -38.06756 -37.23945 -35.67365 -34.14128 -33.65571 -32.80124 -31.07724 -30.07355 -28.75368 -27.09166 -26.36299 -25.88595 -24.63894 -23.58693 -22.56716 -21.58438 -20.45729 -19.19463 -18.89089 -17.74631 -17.35494 -16.76947 -16.57003 -16.02814 -15.56927 -15.44714 -15.27094 -14.94695 -14.79918 -14.71724 -14.34646 -14.00086 -13.76100 -13.69873 -13.25049 -13.17231 -13.13548 -13.03443 -12.76852 -12.31765 -12.19919 -12.07586 -11.93568 -11.70412 -11.54459 -11.46073 -11.34008 -11.18369 -11.10126 -10.98503 -10.71623 -10.62063 -10.39192 -10.25364 -10.10322 -9.94448 -9.39125 -8.85485 -8.66412 -8.22312 -7.83243 -7.61705 -6.29672 -3.69521 2.51064 2.58937 3.24654 3.33918 3.42371 3.70303 4.08446 4.23258 4.29711 4.34981 4.45322 4.54666 4.59360 4.65710 4.78755 4.88864 4.92131 5.00128 5.09684 5.12241 5.18322 5.28297 5.30702 5.33937 5.36098 5.37400 5.42215 5.46082 5.54121 5.55652 5.61799 5.72371 5.78242 5.85002 5.88782 5.97288 6.01808 6.13432 6.22975 6.25833 6.41548 6.46294 6.77354 6.84112 7.27006 7.61491 7.67103 8.03792 8.20989 8.23406 8.76395 9.31437 9.69453 10.22407 10.88704 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012528 B = 0.002701 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.389278 B =10363.367586 C =11722.938365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.359 6.359 3 C 0.043 3.957 4 C 0.497 3.503 5 O -0.461 6.461 6 N -0.614 5.614 7 C 0.108 3.892 8 C -0.137 4.137 9 C -0.114 4.114 10 C -0.110 4.110 11 H 0.080 0.920 12 C -0.146 4.146 13 C 0.161 3.839 14 H 0.072 0.928 15 C -0.128 4.128 16 C 0.078 3.922 17 N -0.654 5.654 18 C 0.055 3.945 19 C 0.446 3.554 20 O -0.580 6.580 21 N -0.569 5.569 22 C -0.294 4.294 23 H 0.103 0.897 24 C 0.019 3.981 25 N -0.905 5.905 26 Si 0.928 3.072 27 H -0.268 1.268 28 H -0.283 1.283 29 H -0.282 1.282 30 H 0.092 0.908 31 H 0.042 0.958 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.118 0.882 45 H 0.054 0.946 46 H 0.005 0.995 47 H 0.072 0.928 48 H 0.341 0.659 49 H 0.035 0.965 50 H 0.082 0.918 51 H 0.391 0.609 52 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.364 26.563 -12.449 29.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C -0.038 4.038 4 C 0.283 3.717 5 O -0.332 6.332 6 N -0.352 5.352 7 C -0.015 4.015 8 C -0.175 4.175 9 C -0.152 4.152 10 C -0.129 4.129 11 H 0.099 0.901 12 C -0.204 4.204 13 C 0.058 3.942 14 H 0.090 0.910 15 C -0.165 4.165 16 C -0.051 4.051 17 N -0.286 5.286 18 C -0.077 4.077 19 C 0.232 3.768 20 O -0.463 6.463 21 N -0.206 5.206 22 C -0.424 4.424 23 H 0.120 0.880 24 C -0.181 4.181 25 N -0.547 5.547 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.209 1.209 29 H -0.208 1.208 30 H 0.111 0.889 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.136 0.864 45 H 0.073 0.927 46 H 0.023 0.977 47 H 0.090 0.910 48 H 0.160 0.840 49 H 0.053 0.947 50 H 0.100 0.900 51 H 0.224 0.776 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.227 25.051 -13.220 28.638 hybrid contribution 0.085 0.333 1.416 1.457 sum -4.142 25.383 -11.804 28.298 Atomic orbital electron populations 1.22833 0.80535 1.03532 0.99697 1.88102 1.19583 1.24739 1.95267 1.22322 0.92550 0.87168 1.01723 1.20209 0.88441 0.84716 0.78295 1.90968 1.72025 1.26197 1.44009 1.48005 1.06902 1.05597 1.74664 1.21725 0.97984 0.83035 0.98786 1.21938 0.96709 0.99843 0.99024 1.21585 0.94872 0.96609 1.02111 1.21666 0.96419 0.95154 0.99643 0.90140 1.21807 0.94314 1.02514 1.01730 1.21293 0.78588 0.96893 0.97415 0.91041 1.22226 0.99296 0.93915 1.01055 1.22122 1.00720 0.87878 0.94357 1.59895 1.22593 1.14590 1.31511 1.21606 1.00800 0.94986 0.90357 1.19886 0.84684 0.88452 0.83793 1.90514 1.45970 1.67655 1.42190 1.41868 1.52136 1.09699 1.16918 1.19758 1.34916 0.84301 1.03395 0.87955 1.25236 0.97089 1.00363 0.95462 1.69625 1.40027 1.36835 1.08240 0.85815 0.77981 0.82358 0.78279 1.19243 1.20892 1.20826 0.88914 0.93936 0.94114 0.90831 0.90958 0.90095 0.91206 0.91317 0.90716 0.91634 0.91818 0.92483 0.91880 0.92623 0.86393 0.92717 0.97703 0.90982 0.84050 0.94733 0.90020 0.77578 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.36 -4.86 10.24 -55.14 -0.56 -5.43 16 3 C 0.04 0.42 4.77 36.01 0.17 0.59 16 4 C 0.50 6.20 6.20 -10.98 -0.07 6.14 16 5 O -0.46 -7.95 10.40 -14.35 -0.15 -8.10 16 6 N -0.61 -5.75 2.92 -165.22 -0.48 -6.23 16 7 C 0.11 0.61 6.35 -3.71 -0.02 0.59 16 8 C -0.14 -0.72 6.08 -26.61 -0.16 -0.88 16 9 C -0.11 -0.69 5.17 -26.68 -0.14 -0.83 16 10 C -0.11 -0.91 2.02 -90.50 -0.18 -1.09 16 11 H 0.08 0.81 6.20 -51.93 -0.32 0.49 16 12 C -0.15 -1.14 8.96 37.16 0.33 -0.81 16 13 C 0.16 1.58 2.66 -67.60 -0.18 1.40 16 14 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 15 C -0.13 -1.70 4.37 -26.73 -0.12 -1.82 16 16 C 0.08 1.22 3.80 -3.82 -0.01 1.20 16 17 N -0.65 -12.90 6.09 -115.06 -0.70 -13.60 16 18 C 0.06 1.15 6.17 -4.98 -0.03 1.12 16 19 C 0.45 11.71 7.82 -10.99 -0.09 11.62 16 20 O -0.58 -17.26 15.78 5.55 0.09 -17.17 16 21 N -0.57 -15.61 5.29 -10.97 -0.06 -15.67 16 22 C -0.29 -8.71 9.68 -14.94 -0.14 -8.86 16 23 H 0.10 3.18 7.16 -52.49 -0.38 2.81 16 24 C 0.02 0.54 5.50 -17.47 -0.10 0.45 16 25 N -0.91 -25.80 13.05 55.50 0.72 -25.08 16 26 Si 0.93 22.07 29.55 -169.99 -5.02 17.05 16 27 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.04 0.32 8.14 -51.92 -0.42 -0.10 16 32 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.57 7.92 -51.93 -0.41 0.16 16 34 H 0.07 0.51 7.71 -51.93 -0.40 0.11 16 35 H 0.08 0.33 5.93 -51.93 -0.31 0.02 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.57 6.72 -51.93 -0.35 0.22 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.12 1.95 5.73 -52.98 -0.30 1.64 16 45 H 0.05 0.68 6.85 -51.93 -0.36 0.33 16 46 H 0.01 0.07 6.64 -51.93 -0.34 -0.27 16 47 H 0.07 1.20 5.08 -51.93 -0.26 0.94 16 48 H 0.34 6.77 8.43 -39.29 -0.33 6.44 16 49 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 50 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 51 H 0.39 10.26 7.90 -40.82 -0.32 9.94 16 52 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 401.61 15.07 6.05 6.05 Total: -1.00 -36.69 401.61 -8.46 -45.15 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -8.72 Total: 12.80 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: 0.37 Total: 10.22 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: -0.52 Total: -60.58 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.63 Total: -30.70 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.69 -8.46 -45.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707134176.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.342 kcal (2) G-P(sol) polarization free energy of solvation -36.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds