Wall clock time and date at job start Wed Apr 1 2020 00:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42900 * 113.99748 * 2 1 4 4 C 1.50708 * 109.47150 * 180.02562 * 3 2 1 5 5 O 1.21275 * 119.99785 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99586 * 180.02562 * 4 3 2 7 7 C 1.46924 * 120.63571 * 354.26668 * 6 4 3 8 8 C 1.53190 * 108.77185 * 126.41392 * 7 6 4 9 9 C 1.53042 * 109.31363 * 54.64126 * 8 7 6 10 10 C 1.53048 * 109.53443 * 298.63347 * 9 8 7 11 11 H 1.08994 * 109.49377 * 301.37639 * 10 9 8 12 12 C 1.52999 * 109.49394 * 181.31601 * 10 9 8 13 13 C 1.46931 * 120.62259 * 174.29514 * 6 4 3 14 14 H 1.09002 * 109.58379 * 113.79817 * 13 6 4 15 15 C 1.52997 * 109.58869 * 353.37233 * 13 6 4 16 16 C 1.52997 * 109.46924 * 295.67518 * 15 13 6 17 17 N 1.46902 * 109.46956 * 173.28316 * 16 15 13 18 18 C 1.46897 * 111.00090 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47361 * 180.02562 * 18 17 16 20 20 O 1.21292 * 119.99888 * 359.97438 * 19 18 17 21 21 N 1.34775 * 120.00622 * 179.97438 * 19 18 17 22 22 C 1.37087 * 120.00517 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00061 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99950 * 179.97438 * 22 21 19 25 25 N 1.31403 * 120.00340 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99773 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47400 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.47072 * 120.00111 * 26 24 22 29 29 H 1.48495 * 109.47273 * 240.00204 * 26 24 22 30 30 H 1.09000 * 109.47258 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47106 * 299.99241 * 1 2 3 32 32 H 1.08996 * 109.47881 * 60.00031 * 1 2 3 33 33 H 1.08991 * 109.47760 * 60.00319 * 3 2 1 34 34 H 1.09007 * 109.47377 * 300.00302 * 3 2 1 35 35 H 1.09002 * 109.58309 * 6.63163 * 7 6 4 36 36 H 1.08995 * 109.58703 * 246.20493 * 7 6 4 37 37 H 1.08996 * 109.50417 * 294.68556 * 8 7 6 38 38 H 1.09004 * 109.49809 * 174.58627 * 8 7 6 39 39 H 1.08997 * 109.46491 * 178.61025 * 9 8 7 40 40 H 1.09001 * 109.46139 * 58.64694 * 9 8 7 41 41 H 1.09001 * 109.47400 * 60.00060 * 12 10 9 42 42 H 1.09006 * 109.46710 * 180.02562 * 12 10 9 43 43 H 1.09002 * 109.47105 * 299.99696 * 12 10 9 44 44 H 1.08996 * 109.47540 * 55.67963 * 15 13 6 45 45 H 1.08999 * 109.47023 * 175.67787 * 15 13 6 46 46 H 1.08994 * 109.47531 * 293.27936 * 16 15 13 47 47 H 1.09000 * 109.47521 * 53.28609 * 16 15 13 48 48 H 1.00896 * 111.00398 * 56.04415 * 17 16 15 49 49 H 1.09009 * 109.46848 * 299.99618 * 18 17 16 50 50 H 1.08996 * 109.47381 * 59.99447 * 18 17 16 51 51 H 0.97006 * 119.99460 * 359.97438 * 21 19 18 52 52 H 0.96998 * 120.00210 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0340 0.0917 -0.0006 6 7 4.2763 2.2970 -0.0002 7 6 3.6642 3.6268 -0.1254 8 6 4.1427 4.5013 1.0378 9 6 5.6728 4.5138 1.0655 10 6 6.1924 3.0911 1.2852 11 1 5.7960 2.6997 2.2220 12 6 7.7211 3.1094 1.3455 13 6 5.7371 2.2006 0.1249 14 1 6.2060 2.5371 -0.7998 15 6 6.1332 0.7497 0.4057 16 6 5.5685 0.3202 1.7612 17 7 5.8094 -1.1153 1.9594 18 6 5.2788 -1.5645 3.2535 19 6 5.5446 -3.0383 3.4212 20 8 6.1190 -3.6542 2.5483 21 7 5.1440 -3.6723 4.5410 22 6 5.3852 -5.0132 4.6933 23 1 5.8967 -5.5615 3.9160 24 6 4.9726 -5.6666 5.8481 25 7 4.3507 -4.9994 6.7941 26 14 5.3021 -7.4935 6.0559 27 1 6.0125 -8.0079 4.8575 28 1 6.1429 -7.7111 7.2605 29 1 4.0134 -8.2139 6.2151 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8901 32 1 -0.3635 0.5138 -0.8899 33 1 1.6886 1.8464 0.8899 34 1 1.6884 1.8465 -0.8900 35 1 2.5787 3.5341 -0.0904 36 1 3.9641 4.0795 -1.0705 37 1 3.7652 4.0964 1.9767 38 1 3.7730 5.5180 0.9046 39 1 6.0161 5.1552 1.8772 40 1 6.0501 4.8956 0.1168 41 1 8.0446 3.7454 2.1695 42 1 8.0906 2.0958 1.5015 43 1 8.1170 3.4998 0.4080 44 1 5.7311 0.1054 -0.3761 45 1 7.2199 0.6664 0.4220 46 1 6.0594 0.8838 2.5545 47 1 4.4964 0.5155 1.7867 48 1 6.7913 -1.3321 1.8759 49 1 5.7675 -1.0138 4.0574 50 1 4.2048 -1.3822 3.2889 51 1 4.6849 -3.1797 5.2393 52 1 4.0624 -5.4556 7.6000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707134176.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:48 Heat of formation + Delta-G solvation = -112.486876 kcal Electronic energy + Delta-G solvation = -31546.968205 eV Core-core repulsion = 27353.702239 eV Total energy + Delta-G solvation = -4193.265967 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.97605 -40.15575 -39.13466 -38.08756 -37.01090 -35.93339 -34.91214 -33.68427 -33.26143 -30.94867 -29.79300 -28.20256 -27.28600 -26.84082 -26.07913 -24.83664 -23.66626 -22.26857 -21.27611 -21.10106 -19.96912 -19.77335 -18.22256 -17.85803 -17.49646 -17.37439 -16.98501 -16.54489 -16.27588 -16.14900 -15.98228 -15.90267 -15.67696 -15.37466 -15.08818 -14.61041 -14.53625 -14.19683 -14.17216 -13.91280 -13.77095 -13.53731 -13.41069 -13.22032 -13.09689 -12.90918 -12.83418 -12.60779 -12.43802 -12.40207 -12.26272 -12.12530 -11.93217 -11.76100 -11.62551 -11.53585 -11.47354 -11.15169 -10.71524 -10.37600 -10.04037 -9.80787 -9.48012 -9.11936 -8.48403 -5.97655 1.35177 1.39566 1.55143 1.67553 1.82478 2.01274 2.28335 2.94267 3.03112 3.17791 3.49701 3.66065 3.78839 3.84226 3.95314 4.09228 4.14607 4.18232 4.25938 4.26621 4.32619 4.38223 4.41187 4.47353 4.47478 4.56813 4.58543 4.60055 4.64488 4.69656 4.83587 4.86795 4.88094 4.93734 4.99897 5.14023 5.17925 5.25130 5.25985 5.35284 5.38766 5.46868 5.56745 5.74548 5.92698 6.12728 6.20279 6.50307 6.52198 6.58264 7.10028 7.37283 7.52254 8.08407 8.69677 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012528 B = 0.002701 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.389278 B =10363.367586 C =11722.938365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.043 3.957 4 C 0.487 3.513 5 O -0.523 6.523 6 N -0.607 5.607 7 C 0.101 3.899 8 C -0.133 4.133 9 C -0.111 4.111 10 C -0.104 4.104 11 H 0.060 0.940 12 C -0.145 4.145 13 C 0.163 3.837 14 H 0.085 0.915 15 C -0.119 4.119 16 C 0.091 3.909 17 N -0.674 5.674 18 C 0.072 3.928 19 C 0.439 3.561 20 O -0.622 6.622 21 N -0.572 5.572 22 C -0.335 4.335 23 H 0.077 0.923 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.996 3.004 27 H -0.275 1.275 28 H -0.267 1.267 29 H -0.269 1.269 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.057 0.943 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.044 0.956 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.057 0.943 46 H 0.017 0.983 47 H 0.063 0.937 48 H 0.336 0.664 49 H 0.060 0.940 50 H 0.087 0.913 51 H 0.396 0.604 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.235 29.211 -12.217 32.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.327 6.327 3 C -0.036 4.036 4 C 0.275 3.725 5 O -0.399 6.399 6 N -0.343 5.343 7 C -0.021 4.021 8 C -0.171 4.171 9 C -0.148 4.148 10 C -0.123 4.123 11 H 0.079 0.921 12 C -0.203 4.203 13 C 0.060 3.940 14 H 0.103 0.897 15 C -0.157 4.157 16 C -0.038 4.038 17 N -0.306 5.306 18 C -0.060 4.060 19 C 0.227 3.773 20 O -0.508 6.508 21 N -0.210 5.210 22 C -0.465 4.465 23 H 0.095 0.905 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.819 3.181 27 H -0.199 1.199 28 H -0.192 1.192 29 H -0.194 1.194 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.075 0.925 46 H 0.035 0.965 47 H 0.081 0.919 48 H 0.154 0.846 49 H 0.078 0.922 50 H 0.105 0.895 51 H 0.229 0.771 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.130 27.791 -12.966 31.093 hybrid contribution 0.333 -0.428 1.335 1.441 sum -4.796 27.363 -11.631 30.116 Atomic orbital electron populations 1.22977 0.78701 1.03681 1.01586 1.88035 1.21840 1.27187 1.95687 1.22489 0.90513 0.86352 1.04286 1.20827 0.89822 0.84545 0.77281 1.90960 1.73242 1.28469 1.47193 1.48111 1.06556 1.06539 1.73139 1.22074 0.99117 0.80926 0.99953 1.21934 0.95974 1.01025 0.98191 1.21579 0.95540 0.94683 1.03045 1.21594 0.96641 0.96379 0.97715 0.92138 1.21800 0.94020 1.01670 1.02763 1.21256 0.79342 0.94654 0.98752 0.89668 1.22038 0.99008 0.95945 0.98663 1.22086 1.00336 0.85404 0.95925 1.59902 1.22230 1.17567 1.30867 1.21414 1.01363 0.91257 0.91989 1.20803 0.83348 0.90486 0.82697 1.90475 1.47675 1.69218 1.43420 1.41915 1.52260 1.09337 1.17441 1.19722 1.37193 0.85528 1.04037 0.90498 1.26093 0.95935 1.04856 0.94419 1.69683 1.39357 1.38652 1.08482 0.84832 0.78410 0.76536 0.78277 1.19923 1.19197 1.19382 0.89809 0.92451 0.91693 0.88510 0.87620 0.88092 0.89324 0.92434 0.88126 0.90952 0.90553 0.91676 0.93695 0.91334 0.89656 0.92501 0.96515 0.91919 0.84583 0.92244 0.89517 0.77067 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.70 16 2 O -0.41 -11.09 10.24 -129.94 -1.33 -12.42 16 3 C 0.04 0.79 4.77 71.24 0.34 1.13 16 4 C 0.49 12.08 6.20 87.66 0.54 12.62 16 5 O -0.52 -18.94 10.40 16.02 0.17 -18.77 16 6 N -0.61 -10.50 2.92 -795.04 -2.32 -12.82 16 7 C 0.10 0.80 6.35 86.36 0.55 1.34 16 8 C -0.13 -0.92 6.08 30.67 0.19 -0.74 16 9 C -0.11 -1.00 5.17 30.62 0.16 -0.84 16 10 C -0.10 -1.56 2.02 -10.72 -0.02 -1.58 16 11 H 0.06 1.16 6.20 -2.39 -0.01 1.15 16 12 C -0.14 -2.06 8.96 71.98 0.65 -1.42 16 13 C 0.16 3.06 2.66 44.97 0.12 3.18 16 14 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 15 C -0.12 -3.29 4.37 30.59 0.13 -3.16 16 16 C 0.09 2.90 3.80 86.30 0.33 3.23 16 17 N -0.67 -27.72 6.09 -517.94 -3.15 -30.87 16 18 C 0.07 3.10 6.17 85.56 0.53 3.63 16 19 C 0.44 23.95 7.82 87.66 0.69 24.63 16 20 O -0.62 -38.83 15.78 -3.07 -0.05 -38.88 16 21 N -0.57 -32.40 5.29 -306.99 -1.62 -34.02 16 22 C -0.34 -20.48 9.68 84.04 0.81 -19.66 16 23 H 0.08 5.01 7.16 -2.91 -0.02 4.99 16 24 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 25 N -0.92 -52.08 13.05 21.66 0.28 -51.80 16 26 Si 1.00 45.14 29.55 68.60 2.03 47.17 16 27 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 28 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 29 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 1.28 7.92 -2.39 -0.02 1.26 16 34 H 0.11 1.17 7.71 -2.38 -0.02 1.16 16 35 H 0.10 0.42 5.93 -2.39 -0.01 0.40 16 36 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.10 0.25 8.14 -2.38 -0.02 0.23 16 39 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.04 0.80 6.72 -2.38 -0.02 0.78 16 43 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.09 3.02 5.73 -19.06 -0.11 2.91 16 45 H 0.06 1.48 6.85 -2.39 -0.02 1.47 16 46 H 0.02 0.50 6.64 -2.39 -0.02 0.48 16 47 H 0.06 2.15 5.08 -2.39 -0.01 2.14 16 48 H 0.34 14.08 8.43 -89.70 -0.76 13.32 16 49 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 50 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 51 H 0.40 21.24 7.90 -92.70 -0.73 20.51 16 52 H 0.28 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -83.78 401.61 0.08 -83.70 By element: Atomic # 1 Polarization: 45.59 SS G_CDS: -0.65 Total: 44.94 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: 6.72 Total: 23.77 kcal Atomic # 7 Polarization: -122.70 SS G_CDS: -6.81 Total: -129.51 kcal Atomic # 8 Polarization: -68.86 SS G_CDS: -1.21 Total: -70.07 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -83.78 0.08 -83.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707134176.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.787 kcal (2) G-P(sol) polarization free energy of solvation -83.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds