Wall clock time and date at job start Wed Apr 1 2020 00:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42906 * 114.00104 * 2 1 4 4 C 1.50700 * 109.47416 * 180.02562 * 3 2 1 5 5 O 1.21283 * 119.99386 * 359.97438 * 4 3 2 6 6 N 1.34770 * 119.99947 * 180.02562 * 4 3 2 7 7 C 1.46923 * 120.63104 * 5.36135 * 6 4 3 8 8 C 1.53194 * 108.77615 * 233.62727 * 7 6 4 9 9 C 1.53046 * 109.31347 * 305.36784 * 8 7 6 10 10 C 1.53043 * 109.53804 * 61.36066 * 9 8 7 11 11 H 1.08999 * 109.49975 * 178.68183 * 10 9 8 12 12 C 1.53000 * 109.49504 * 58.58653 * 10 9 8 13 13 C 1.46928 * 120.62911 * 185.37871 * 6 4 3 14 14 H 1.08997 * 109.70619 * 246.22891 * 13 6 4 15 15 C 1.53004 * 109.58669 * 6.58875 * 13 6 4 16 16 C 1.52995 * 109.47157 * 177.78259 * 15 13 6 17 17 N 1.46900 * 109.47277 * 174.91754 * 16 15 13 18 18 C 1.46902 * 111.00277 * 179.97438 * 17 16 15 19 19 C 1.50696 * 109.47180 * 179.97438 * 18 17 16 20 20 O 1.21299 * 119.99956 * 0.02562 * 19 18 17 21 21 N 1.34776 * 120.00118 * 179.97438 * 19 18 17 22 22 C 1.37098 * 120.00325 * 180.02562 * 21 19 18 23 23 H 1.08004 * 119.99860 * 0.02562 * 22 21 19 24 24 C 1.38945 * 120.00427 * 180.02562 * 22 21 19 25 25 N 1.31421 * 119.99622 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00292 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47210 * 180.02562 * 26 24 22 28 28 H 1.48499 * 109.46627 * 60.00622 * 26 24 22 29 29 H 1.48494 * 109.47128 * 300.00472 * 26 24 22 30 30 H 1.09004 * 109.47407 * 59.99941 * 1 2 3 31 31 H 1.09001 * 109.47141 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47295 * 299.99756 * 1 2 3 33 33 H 1.08997 * 109.46864 * 59.99907 * 3 2 1 34 34 H 1.08999 * 109.46710 * 300.00353 * 3 2 1 35 35 H 1.09005 * 109.58684 * 113.84608 * 7 6 4 36 36 H 1.08994 * 109.58683 * 353.41822 * 7 6 4 37 37 H 1.09001 * 109.50112 * 185.41552 * 8 7 6 38 38 H 1.09003 * 109.51889 * 65.33106 * 8 7 6 39 39 H 1.09002 * 109.45630 * 301.34344 * 9 8 7 40 40 H 1.09000 * 109.45056 * 181.37632 * 9 8 7 41 41 H 1.09003 * 109.47586 * 300.15950 * 12 10 9 42 42 H 1.09000 * 109.46962 * 60.16338 * 12 10 9 43 43 H 1.09001 * 109.47126 * 180.15669 * 12 10 9 44 44 H 1.08999 * 109.46993 * 57.77762 * 15 13 6 45 45 H 1.09001 * 109.46568 * 297.78136 * 15 13 6 46 46 H 1.09003 * 109.47488 * 54.91765 * 16 15 13 47 47 H 1.08998 * 109.47322 * 294.91714 * 16 15 13 48 48 H 1.00898 * 110.99829 * 56.04369 * 17 16 15 49 49 H 1.09005 * 109.46653 * 59.99989 * 18 17 16 50 50 H 1.08994 * 109.47005 * 300.00445 * 18 17 16 51 51 H 0.97001 * 119.99768 * 0.02562 * 21 19 18 52 52 H 0.96993 * 119.99963 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0340 0.0916 -0.0006 6 7 4.2764 2.2969 -0.0002 7 6 3.6637 3.6269 0.1190 8 6 4.1467 4.4984 -1.0447 9 6 5.6770 4.5109 -1.0666 10 6 6.1974 3.0876 -1.2804 11 1 7.2866 3.1005 -1.3193 12 6 5.6454 2.5343 -2.5957 13 6 5.7376 2.2002 -0.1193 14 1 6.2049 2.5377 0.8058 15 6 6.1349 0.7486 -0.3948 16 6 7.6518 0.6601 -0.5732 17 7 8.0468 -0.7476 -0.7165 18 6 9.5001 -0.8716 -0.8907 19 6 9.8667 -2.3263 -1.0334 20 8 9.0021 -3.1762 -0.9942 21 7 11.1549 -2.6829 -1.2055 22 6 11.4884 -4.0064 -1.3358 23 1 10.7186 -4.7631 -1.3009 24 6 12.8166 -4.3741 -1.5127 25 7 13.7533 -3.4532 -1.5546 26 14 13.2708 -6.1772 -1.6909 27 1 14.7400 -6.3026 -1.8662 28 1 12.5801 -6.7468 -2.8757 29 1 12.8533 -6.9157 -0.4721 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.9600 4.0824 1.0640 36 1 2.5784 3.5341 0.0801 37 1 3.7765 5.5154 -0.9158 38 1 3.7728 4.0914 -1.9842 39 1 6.0505 4.8953 -0.1175 40 1 6.0232 5.1500 -1.8788 41 1 4.5561 2.5230 -2.5565 42 1 5.9728 3.1660 -3.4214 43 1 6.0140 1.5196 -2.7462 44 1 5.6414 0.4030 -1.3032 45 1 5.8306 0.1232 0.4445 46 1 8.1459 1.0891 0.2985 47 1 7.9456 1.2124 -1.4658 48 1 7.5527 -1.1859 -1.4793 49 1 10.0073 -0.4530 -0.0214 50 1 9.8062 -0.3299 -1.7856 51 1 11.8462 -2.0032 -1.2372 52 1 13.5174 -2.5170 -1.4624 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707134179.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:52 Heat of formation + Delta-G solvation = -100.056274 kcal Electronic energy + Delta-G solvation = -30719.648499 eV Core-core repulsion = 26526.921564 eV Total energy + Delta-G solvation = -4192.726935 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.14238 -38.64496 -38.29522 -37.37692 -35.99224 -34.29799 -33.89474 -32.91577 -30.99391 -29.88838 -29.10490 -27.31899 -26.47863 -25.96301 -24.64985 -23.93448 -22.87745 -21.29295 -20.58354 -19.54660 -18.75888 -17.82286 -17.47544 -16.89761 -16.71575 -16.35913 -16.08710 -15.78036 -15.25336 -15.06535 -14.84534 -14.79892 -14.47656 -14.25209 -13.88647 -13.73448 -13.55409 -13.52460 -13.31376 -13.16809 -12.74733 -12.58890 -12.32711 -12.11013 -11.98787 -11.78522 -11.71512 -11.47912 -11.38588 -11.31096 -11.12709 -10.88135 -10.85784 -10.74546 -10.50736 -10.17847 -10.14905 -9.78752 -9.46273 -9.12468 -8.82815 -8.37471 -7.96720 -7.90321 -6.67740 -3.80063 2.35270 2.40865 3.37640 3.40321 3.49670 3.60953 3.94749 4.11033 4.23992 4.26984 4.40485 4.43619 4.50366 4.57695 4.61943 4.72403 4.78199 4.89205 4.91669 4.96699 5.03454 5.06373 5.22423 5.29013 5.30432 5.30811 5.34778 5.37699 5.38464 5.43296 5.53748 5.56132 5.72502 5.76201 5.78975 5.81128 5.86079 5.98259 6.06101 6.11569 6.17736 6.35044 6.61927 6.72543 7.11802 7.34467 7.78240 7.90288 8.01677 8.16505 8.69308 8.89532 9.56637 9.98301 10.76000 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015423 B = 0.002106 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.081528 B =13290.101416 C =14762.525591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.042 3.958 4 C 0.510 3.490 5 O -0.493 6.493 6 N -0.608 5.608 7 C 0.107 3.893 8 C -0.139 4.139 9 C -0.115 4.115 10 C -0.107 4.107 11 H 0.085 0.915 12 C -0.148 4.148 13 C 0.158 3.842 14 H 0.074 0.926 15 C -0.112 4.112 16 C 0.055 3.945 17 N -0.665 5.665 18 C 0.052 3.948 19 C 0.444 3.556 20 O -0.573 6.573 21 N -0.579 5.579 22 C -0.380 4.380 23 H 0.098 0.902 24 C -0.012 4.012 25 N -0.904 5.904 26 Si 1.092 2.908 27 H -0.280 1.280 28 H -0.284 1.284 29 H -0.284 1.284 30 H 0.042 0.958 31 H 0.092 0.908 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.104 0.896 46 H 0.065 0.935 47 H 0.023 0.977 48 H 0.350 0.650 49 H 0.084 0.916 50 H 0.040 0.960 51 H 0.375 0.625 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.089 23.583 1.654 33.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C -0.038 4.038 4 C 0.297 3.703 5 O -0.366 6.366 6 N -0.345 5.345 7 C -0.016 4.016 8 C -0.177 4.177 9 C -0.153 4.153 10 C -0.126 4.126 11 H 0.104 0.896 12 C -0.205 4.205 13 C 0.055 3.945 14 H 0.092 0.908 15 C -0.150 4.150 16 C -0.076 4.076 17 N -0.298 5.298 18 C -0.081 4.081 19 C 0.230 3.770 20 O -0.456 6.456 21 N -0.217 5.217 22 C -0.509 4.509 23 H 0.116 0.884 24 C -0.213 4.213 25 N -0.543 5.543 26 Si 0.918 3.082 27 H -0.205 1.205 28 H -0.211 1.211 29 H -0.210 1.210 30 H 0.061 0.939 31 H 0.111 0.889 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.122 0.878 46 H 0.084 0.916 47 H 0.041 0.959 48 H 0.169 0.831 49 H 0.102 0.898 50 H 0.058 0.942 51 H 0.208 0.792 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -22.988 21.014 2.139 31.219 hybrid contribution -1.041 2.408 -0.706 2.717 sum -24.029 23.423 1.433 33.587 Atomic orbital electron populations 1.22842 0.80415 1.03481 0.99910 1.88061 1.19715 1.25037 1.95331 1.22335 0.92404 0.87024 1.02008 1.20214 0.88369 0.84509 0.77244 1.90870 1.72794 1.26503 1.46453 1.48019 1.06950 1.05612 1.73921 1.21762 0.97864 0.82918 0.99092 1.21980 0.96859 0.99810 0.99026 1.21553 0.95024 0.96505 1.02178 1.21604 1.00946 0.94558 0.95501 0.89642 1.21892 1.01111 1.01408 0.96049 1.21303 0.78410 0.97157 0.97658 0.90835 1.22160 0.93553 0.93743 1.05520 1.22138 0.96349 0.89426 0.99638 1.59987 1.04535 1.13706 1.51549 1.21662 0.89917 0.96121 1.00435 1.19792 0.83351 0.89715 0.84126 1.90542 1.48324 1.51849 1.54900 1.41938 1.06251 1.08518 1.65014 1.20536 0.96218 0.83509 1.50649 0.88380 1.26501 0.91054 1.08072 0.95719 1.70898 1.34522 1.01470 1.47445 0.83126 0.76167 0.71894 0.77019 1.20477 1.21061 1.21013 0.93915 0.88948 0.93892 0.90631 0.90615 0.90971 0.90091 0.90737 0.90986 0.91675 0.91525 0.92633 0.92861 0.91999 0.90861 0.87795 0.91645 0.95904 0.83087 0.89818 0.94218 0.79197 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.36 -4.07 10.24 -55.14 -0.56 -4.63 16 3 C 0.04 0.35 4.77 36.01 0.17 0.52 16 4 C 0.51 5.79 7.61 -10.99 -0.08 5.71 16 5 O -0.49 -8.03 12.05 -14.36 -0.17 -8.21 16 6 N -0.61 -5.26 2.41 -165.22 -0.40 -5.66 16 7 C 0.11 0.52 6.35 -3.71 -0.02 0.50 16 8 C -0.14 -0.62 5.74 -26.61 -0.15 -0.77 16 9 C -0.12 -0.65 5.43 -26.69 -0.14 -0.80 16 10 C -0.11 -0.85 2.24 -90.50 -0.20 -1.05 16 11 H 0.09 0.70 6.86 -51.93 -0.36 0.35 16 12 C -0.15 -1.30 8.17 37.16 0.30 -0.99 16 13 C 0.16 1.53 2.74 -67.60 -0.19 1.34 16 14 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 15 C -0.11 -1.50 2.90 -26.73 -0.08 -1.58 16 16 C 0.05 0.76 5.09 -3.83 -0.02 0.74 16 17 N -0.67 -12.28 6.13 -115.06 -0.70 -12.99 16 18 C 0.05 0.99 6.17 -4.98 -0.03 0.96 16 19 C 0.44 11.28 7.82 -10.99 -0.09 11.19 16 20 O -0.57 -16.86 15.78 5.54 0.09 -16.77 16 21 N -0.58 -15.36 5.28 -10.96 -0.06 -15.42 16 22 C -0.38 -11.17 9.68 -14.93 -0.14 -11.31 16 23 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 24 C -0.01 -0.33 5.50 -17.47 -0.10 -0.42 16 25 N -0.90 -26.13 13.69 55.50 0.76 -25.37 16 26 Si 1.09 25.20 29.92 -169.99 -5.09 20.11 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.08 0.42 7.72 -51.93 -0.40 0.02 16 34 H 0.08 0.43 7.91 -51.93 -0.41 0.02 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.24 5.93 -51.93 -0.31 -0.07 16 37 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 38 H 0.07 0.37 6.33 -51.93 -0.33 0.04 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.05 0.48 5.97 -51.93 -0.31 0.17 16 42 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.67 6.12 -51.93 -0.32 0.35 16 44 H 0.07 1.09 5.51 -51.93 -0.29 0.81 16 45 H 0.10 1.75 6.27 -51.93 -0.33 1.42 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.02 0.29 6.58 -51.93 -0.34 -0.05 16 48 H 0.35 6.83 8.43 -39.29 -0.33 6.50 16 49 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 50 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.38 9.15 6.73 -40.82 -0.27 8.88 16 52 H 0.26 7.25 6.77 -40.82 -0.28 6.97 16 LS Contribution 400.03 15.07 6.03 6.03 Total: -1.00 -37.76 400.03 -8.28 -46.04 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -8.51 Total: 11.52 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 0.34 Total: 5.34 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: -0.40 Total: -59.43 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.65 Total: -29.61 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.09 Total: 20.11 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.76 -8.28 -46.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707134179.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.018 kcal (2) G-P(sol) polarization free energy of solvation -37.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds