Wall clock time and date at job start Wed Apr 1 2020 00:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42906 * 114.00104 * 2 1 4 4 C 1.50700 * 109.47416 * 180.02562 * 3 2 1 5 5 O 1.21283 * 119.99386 * 359.97438 * 4 3 2 6 6 N 1.34770 * 119.99947 * 180.02562 * 4 3 2 7 7 C 1.46923 * 120.63104 * 5.36135 * 6 4 3 8 8 C 1.53194 * 108.77615 * 233.62727 * 7 6 4 9 9 C 1.53046 * 109.31347 * 305.36784 * 8 7 6 10 10 C 1.53043 * 109.53804 * 61.36066 * 9 8 7 11 11 H 1.08999 * 109.49975 * 178.68183 * 10 9 8 12 12 C 1.53000 * 109.49504 * 58.58653 * 10 9 8 13 13 C 1.46928 * 120.62911 * 185.37871 * 6 4 3 14 14 H 1.08997 * 109.70619 * 246.22891 * 13 6 4 15 15 C 1.53004 * 109.58669 * 6.58875 * 13 6 4 16 16 C 1.52995 * 109.47157 * 177.78259 * 15 13 6 17 17 N 1.46900 * 109.47277 * 174.91754 * 16 15 13 18 18 C 1.46902 * 111.00277 * 179.97438 * 17 16 15 19 19 C 1.50696 * 109.47180 * 179.97438 * 18 17 16 20 20 O 1.21299 * 119.99956 * 0.02562 * 19 18 17 21 21 N 1.34776 * 120.00118 * 179.97438 * 19 18 17 22 22 C 1.37098 * 120.00325 * 180.02562 * 21 19 18 23 23 H 1.08004 * 119.99860 * 0.02562 * 22 21 19 24 24 C 1.38945 * 120.00427 * 180.02562 * 22 21 19 25 25 N 1.31421 * 119.99622 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00292 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47210 * 180.02562 * 26 24 22 28 28 H 1.48499 * 109.46627 * 60.00622 * 26 24 22 29 29 H 1.48494 * 109.47128 * 300.00472 * 26 24 22 30 30 H 1.09004 * 109.47407 * 59.99941 * 1 2 3 31 31 H 1.09001 * 109.47141 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47295 * 299.99756 * 1 2 3 33 33 H 1.08997 * 109.46864 * 59.99907 * 3 2 1 34 34 H 1.08999 * 109.46710 * 300.00353 * 3 2 1 35 35 H 1.09005 * 109.58684 * 113.84608 * 7 6 4 36 36 H 1.08994 * 109.58683 * 353.41822 * 7 6 4 37 37 H 1.09001 * 109.50112 * 185.41552 * 8 7 6 38 38 H 1.09003 * 109.51889 * 65.33106 * 8 7 6 39 39 H 1.09002 * 109.45630 * 301.34344 * 9 8 7 40 40 H 1.09000 * 109.45056 * 181.37632 * 9 8 7 41 41 H 1.09003 * 109.47586 * 300.15950 * 12 10 9 42 42 H 1.09000 * 109.46962 * 60.16338 * 12 10 9 43 43 H 1.09001 * 109.47126 * 180.15669 * 12 10 9 44 44 H 1.08999 * 109.46993 * 57.77762 * 15 13 6 45 45 H 1.09001 * 109.46568 * 297.78136 * 15 13 6 46 46 H 1.09003 * 109.47488 * 54.91765 * 16 15 13 47 47 H 1.08998 * 109.47322 * 294.91714 * 16 15 13 48 48 H 1.00898 * 110.99829 * 56.04369 * 17 16 15 49 49 H 1.09005 * 109.46653 * 59.99989 * 18 17 16 50 50 H 1.08994 * 109.47005 * 300.00445 * 18 17 16 51 51 H 0.97001 * 119.99768 * 0.02562 * 21 19 18 52 52 H 0.96993 * 119.99963 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0340 0.0916 -0.0006 6 7 4.2764 2.2969 -0.0002 7 6 3.6637 3.6269 0.1190 8 6 4.1467 4.4984 -1.0447 9 6 5.6770 4.5109 -1.0666 10 6 6.1974 3.0876 -1.2804 11 1 7.2866 3.1005 -1.3193 12 6 5.6454 2.5343 -2.5957 13 6 5.7376 2.2002 -0.1193 14 1 6.2049 2.5377 0.8058 15 6 6.1349 0.7486 -0.3948 16 6 7.6518 0.6601 -0.5732 17 7 8.0468 -0.7476 -0.7165 18 6 9.5001 -0.8716 -0.8907 19 6 9.8667 -2.3263 -1.0334 20 8 9.0021 -3.1762 -0.9942 21 7 11.1549 -2.6829 -1.2055 22 6 11.4884 -4.0064 -1.3358 23 1 10.7186 -4.7631 -1.3009 24 6 12.8166 -4.3741 -1.5127 25 7 13.7533 -3.4532 -1.5546 26 14 13.2708 -6.1772 -1.6909 27 1 14.7400 -6.3026 -1.8662 28 1 12.5801 -6.7468 -2.8757 29 1 12.8533 -6.9157 -0.4721 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.9600 4.0824 1.0640 36 1 2.5784 3.5341 0.0801 37 1 3.7765 5.5154 -0.9158 38 1 3.7728 4.0914 -1.9842 39 1 6.0505 4.8953 -0.1175 40 1 6.0232 5.1500 -1.8788 41 1 4.5561 2.5230 -2.5565 42 1 5.9728 3.1660 -3.4214 43 1 6.0140 1.5196 -2.7462 44 1 5.6414 0.4030 -1.3032 45 1 5.8306 0.1232 0.4445 46 1 8.1459 1.0891 0.2985 47 1 7.9456 1.2124 -1.4658 48 1 7.5527 -1.1859 -1.4793 49 1 10.0073 -0.4530 -0.0214 50 1 9.8062 -0.3299 -1.7856 51 1 11.8462 -2.0032 -1.2372 52 1 13.5174 -2.5170 -1.4624 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707134179.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:51 Heat of formation + Delta-G solvation = -128.635397 kcal Electronic energy + Delta-G solvation = -30720.887783 eV Core-core repulsion = 26526.921564 eV Total energy + Delta-G solvation = -4193.966219 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.88779 -40.35582 -39.31415 -38.12901 -37.31395 -36.29863 -34.81354 -33.79497 -33.12820 -30.69418 -30.01021 -28.19883 -27.43726 -26.88113 -25.91166 -25.11331 -23.97318 -22.17322 -21.50338 -21.29872 -20.00202 -19.41631 -18.39393 -18.02095 -17.55348 -17.33954 -17.14199 -16.89091 -16.66018 -16.19633 -15.80832 -15.68404 -15.59488 -15.32351 -15.21089 -14.98701 -14.90941 -14.55240 -14.25984 -13.89621 -13.82255 -13.39437 -13.36676 -13.32368 -13.16223 -12.95929 -12.79270 -12.59089 -12.47903 -12.24754 -12.21660 -11.92689 -11.90891 -11.87083 -11.68751 -11.55383 -11.37626 -11.23430 -10.77174 -10.47241 -10.13784 -10.03376 -9.54665 -9.34693 -8.95548 -6.09106 1.50790 1.52957 1.57885 1.73648 1.81984 1.97449 2.38905 2.76090 2.98231 3.13987 3.35152 3.58587 3.75315 3.79357 3.89436 4.06419 4.08976 4.10524 4.15980 4.22038 4.23738 4.27653 4.35808 4.43540 4.46515 4.48603 4.52498 4.55039 4.58883 4.65276 4.71676 4.78808 4.84565 4.86069 4.96311 5.07638 5.16134 5.21039 5.25823 5.30702 5.39990 5.51598 5.57311 5.72840 5.92677 6.01450 6.07281 6.27974 6.44181 6.55753 6.72062 7.23590 7.40940 7.89896 8.52277 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015423 B = 0.002106 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.081528 B =13290.101416 C =14762.525591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.045 3.955 4 C 0.498 3.502 5 O -0.558 6.558 6 N -0.602 5.602 7 C 0.099 3.901 8 C -0.135 4.135 9 C -0.112 4.112 10 C -0.102 4.102 11 H 0.085 0.915 12 C -0.144 4.144 13 C 0.158 3.842 14 H 0.082 0.918 15 C -0.096 4.096 16 C 0.060 3.940 17 N -0.688 5.688 18 C 0.067 3.933 19 C 0.439 3.561 20 O -0.620 6.620 21 N -0.585 5.585 22 C -0.412 4.412 23 H 0.070 0.930 24 C -0.042 4.042 25 N -0.914 5.914 26 Si 1.135 2.865 27 H -0.269 1.269 28 H -0.273 1.273 29 H -0.274 1.274 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.033 0.967 44 H 0.050 0.950 45 H 0.064 0.936 46 H 0.078 0.922 47 H 0.043 0.957 48 H 0.339 0.661 49 H 0.106 0.894 50 H 0.068 0.932 51 H 0.386 0.614 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.794 26.868 1.758 36.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C -0.034 4.034 4 C 0.286 3.714 5 O -0.437 6.437 6 N -0.337 5.337 7 C -0.022 4.022 8 C -0.173 4.173 9 C -0.150 4.150 10 C -0.121 4.121 11 H 0.103 0.897 12 C -0.201 4.201 13 C 0.055 3.945 14 H 0.100 0.900 15 C -0.134 4.134 16 C -0.069 4.069 17 N -0.320 5.320 18 C -0.065 4.065 19 C 0.227 3.773 20 O -0.506 6.506 21 N -0.224 5.224 22 C -0.541 4.541 23 H 0.088 0.912 24 C -0.240 4.240 25 N -0.553 5.553 26 Si 0.954 3.046 27 H -0.194 1.194 28 H -0.198 1.198 29 H -0.199 1.199 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.106 0.894 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.053 0.947 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.061 0.939 48 H 0.156 0.844 49 H 0.124 0.876 50 H 0.086 0.914 51 H 0.220 0.780 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.703 24.412 2.252 34.100 hybrid contribution -0.892 1.459 -0.726 1.857 sum -24.595 25.870 1.526 35.728 Atomic orbital electron populations 1.23015 0.78363 1.03964 1.01695 1.88002 1.22138 1.27135 1.95742 1.22477 0.89754 0.86495 1.04703 1.20968 0.90067 0.84147 0.76177 1.90857 1.74164 1.28956 1.49676 1.48122 1.06382 1.06725 1.72439 1.22129 0.99237 0.80705 1.00141 1.21978 0.95877 1.01017 0.98389 1.21551 0.95946 0.94445 1.03019 1.21572 1.00924 0.95774 0.93852 0.89678 1.21855 1.01061 1.00066 0.97164 1.21230 0.79594 0.94780 0.98896 0.90007 1.21864 0.92848 0.95878 1.02769 1.22207 0.96742 0.87014 1.00957 1.60019 1.03962 1.16662 1.51326 1.21545 0.90710 0.91598 1.02678 1.20925 0.82344 0.92108 0.81943 1.90510 1.49518 1.54065 1.56484 1.41972 1.07132 1.07982 1.65349 1.20525 0.96270 0.84488 1.52853 0.91165 1.27881 0.90499 1.11443 0.94199 1.70968 1.34766 1.01790 1.47812 0.82627 0.76529 0.67633 0.77807 1.19369 1.19819 1.19941 0.92133 0.89316 0.91960 0.87485 0.87788 0.89442 0.87642 0.88146 0.91622 0.90706 0.90709 0.92694 0.91707 0.94745 0.93118 0.91750 0.90345 0.93882 0.84356 0.87554 0.91375 0.77995 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -9.23 10.24 -129.94 -1.33 -10.56 16 3 C 0.04 0.67 4.77 71.24 0.34 1.01 16 4 C 0.50 11.42 7.61 87.66 0.67 12.09 16 5 O -0.56 -19.66 12.05 16.00 0.19 -19.47 16 6 N -0.60 -9.68 2.41 -795.03 -1.92 -11.60 16 7 C 0.10 0.63 6.35 86.36 0.55 1.17 16 8 C -0.13 -0.69 5.74 30.67 0.18 -0.52 16 9 C -0.11 -0.89 5.43 30.62 0.17 -0.73 16 10 C -0.10 -1.44 2.24 -10.71 -0.02 -1.46 16 11 H 0.09 1.21 6.86 -2.39 -0.02 1.20 16 12 C -0.14 -2.43 8.17 71.98 0.59 -1.84 16 13 C 0.16 2.96 2.74 44.98 0.12 3.09 16 14 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 15 C -0.10 -2.70 2.90 30.59 0.09 -2.61 16 16 C 0.06 1.65 5.09 86.30 0.44 2.09 16 17 N -0.69 -26.01 6.13 -517.94 -3.17 -29.18 16 18 C 0.07 2.55 6.17 85.56 0.53 3.08 16 19 C 0.44 22.79 7.82 87.66 0.69 23.47 16 20 O -0.62 -38.02 15.78 -3.09 -0.05 -38.07 16 21 N -0.58 -31.63 5.28 -306.98 -1.62 -33.25 16 22 C -0.41 -24.83 9.68 84.04 0.81 -24.01 16 23 H 0.07 4.56 7.16 -2.91 -0.02 4.54 16 24 C -0.04 -2.37 5.50 84.92 0.47 -1.91 16 25 N -0.91 -52.52 13.69 21.66 0.30 -52.22 16 26 Si 1.13 50.50 29.92 68.60 2.05 52.55 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 28 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 29 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 30 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.47 16 33 H 0.11 0.87 7.72 -2.39 -0.02 0.85 16 34 H 0.10 0.91 7.91 -2.39 -0.02 0.89 16 35 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 36 H 0.11 0.18 5.93 -2.39 -0.01 0.16 16 37 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.07 0.46 6.33 -2.39 -0.02 0.44 16 39 H 0.07 0.49 8.14 -2.39 -0.02 0.48 16 40 H 0.07 0.52 8.14 -2.39 -0.02 0.51 16 41 H 0.05 0.92 5.97 -2.39 -0.01 0.90 16 42 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.03 0.76 6.12 -2.39 -0.01 0.75 16 44 H 0.05 1.65 5.51 -2.39 -0.01 1.63 16 45 H 0.06 2.36 6.27 -2.39 -0.01 2.34 16 46 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.04 1.04 6.58 -2.39 -0.02 1.02 16 48 H 0.34 13.96 8.43 -89.70 -0.76 13.20 16 49 H 0.11 3.59 8.14 -2.38 -0.02 3.57 16 50 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 51 H 0.39 18.93 6.73 -92.71 -0.62 18.30 16 52 H 0.26 14.40 6.77 -92.71 -0.63 13.77 16 Total: -1.00 -87.55 400.03 1.01 -86.54 By element: Atomic # 1 Polarization: 41.09 SS G_CDS: -0.30 Total: 40.79 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 6.85 Total: 14.48 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -6.42 Total: -126.25 kcal Atomic # 8 Polarization: -66.92 SS G_CDS: -1.19 Total: -68.11 kcal Atomic # 14 Polarization: 50.50 SS G_CDS: 2.05 Total: 52.55 kcal Total: -87.55 1.01 -86.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707134179.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.097 kcal (2) G-P(sol) polarization free energy of solvation -87.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds