Wall clock time and date at job start Wed Apr 1 2020 00:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47232 * 2 1 4 4 O 1.42903 * 109.46872 * 180.02562 * 3 2 1 5 5 C 1.42910 * 113.99579 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46525 * 180.02562 * 5 4 3 7 7 O 1.21274 * 120.00397 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99572 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99980 * 180.02562 * 8 6 5 10 10 H 1.09001 * 110.28494 * 327.12733 * 9 8 6 11 11 C 1.54264 * 110.40799 * 89.31236 * 9 8 6 12 12 C 1.54374 * 105.05827 * 118.94149 * 11 9 8 13 13 N 1.48557 * 104.59943 * 23.85024 * 12 11 9 14 14 C 1.46895 * 110.99984 * 200.96213 * 13 12 11 15 15 C 1.50699 * 109.47169 * 279.57125 * 14 13 12 16 16 O 1.21291 * 119.99948 * 0.02562 * 15 14 13 17 17 N 1.34783 * 120.00224 * 179.97438 * 15 14 13 18 18 C 1.37098 * 119.99897 * 179.97438 * 17 15 14 19 19 H 1.08003 * 119.99941 * 0.02562 * 18 17 15 20 20 C 1.38947 * 119.99899 * 180.02562 * 18 17 15 21 21 N 1.31420 * 119.99824 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99896 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47536 * 60.00340 * 22 20 18 24 24 H 1.48508 * 109.46974 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47090 * 299.99895 * 22 20 18 26 26 C 1.48562 * 104.21802 * 320.51541 * 13 12 11 27 27 H 1.08995 * 110.41681 * 280.58228 * 26 13 12 28 28 C 1.53001 * 110.41046 * 158.26081 * 26 13 12 29 29 C 1.52999 * 109.47498 * 174.13167 * 28 26 13 30 30 H 1.09000 * 109.46698 * 299.99828 * 1 2 3 31 31 H 1.08995 * 109.47351 * 59.99813 * 1 2 3 32 32 H 1.09002 * 109.46985 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47378 * 240.00053 * 2 1 3 34 34 H 1.09003 * 109.47538 * 120.00496 * 2 1 3 35 35 H 1.09000 * 109.47138 * 60.00441 * 3 2 1 36 36 H 1.08995 * 109.47106 * 300.00338 * 3 2 1 37 37 H 1.08995 * 109.46612 * 60.00192 * 5 4 3 38 38 H 1.08995 * 109.46776 * 299.99920 * 5 4 3 39 39 H 0.97004 * 119.99914 * 359.97438 * 8 6 5 40 40 H 1.09004 * 110.31496 * 237.83494 * 11 9 8 41 41 H 1.08993 * 110.32674 * 359.93641 * 11 9 8 42 42 H 1.08998 * 110.41347 * 265.06807 * 12 11 9 43 43 H 1.09001 * 110.40979 * 142.62835 * 12 11 9 44 44 H 1.09004 * 109.47157 * 159.57488 * 14 13 12 45 45 H 1.09001 * 109.47627 * 39.57299 * 14 13 12 46 46 H 0.96995 * 119.99715 * 0.02562 * 17 15 14 47 47 H 0.96994 * 119.99404 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.47631 * 294.13743 * 28 26 13 49 49 H 1.09008 * 109.47098 * 54.13108 * 28 26 13 50 50 H 1.08999 * 109.47049 * 65.23653 * 29 28 26 51 51 H 1.09000 * 109.47456 * 185.24224 * 29 28 26 52 52 H 1.09002 * 109.47007 * 305.24186 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0503 2.7480 -0.0001 6 6 5.5526 2.6288 -0.0014 7 8 6.0741 1.5340 -0.0022 8 7 6.3166 3.7392 -0.0007 9 6 7.7770 3.6235 -0.0025 10 1 8.0865 2.7368 0.5507 11 6 8.3102 3.5659 -1.4489 12 6 9.2263 4.8005 -1.5882 13 7 9.6413 5.1176 -0.1974 14 6 10.0912 6.5116 -0.0872 15 6 11.5113 6.6216 -0.5793 16 8 12.0914 5.6357 -0.9827 17 7 12.1365 7.8156 -0.5722 18 6 13.4287 7.9155 -1.0194 19 1 13.9454 7.0374 -1.3778 20 6 14.0734 9.1463 -1.0116 21 7 13.4447 10.2146 -0.5750 22 14 15.8337 9.2825 -1.6216 23 1 15.9004 8.8517 -3.0412 24 1 16.2887 10.6917 -1.5096 25 1 16.7115 8.4125 -0.7985 26 6 8.4158 4.8883 0.6103 27 1 7.7389 5.7382 0.5240 28 6 8.7806 4.6449 2.0761 29 6 7.5022 4.5571 2.9122 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9563 -0.8899 37 1 3.7290 3.2882 0.8904 38 1 3.7283 3.2893 -0.8896 39 1 5.8994 4.6150 0.0004 40 1 8.8815 2.6508 -1.6055 41 1 7.4853 3.6225 -2.1591 42 1 8.6755 5.6359 -2.0203 43 1 10.0966 4.5611 -2.1993 44 1 10.0423 6.8279 0.9548 45 1 9.4469 7.1503 -0.6914 46 1 11.6725 8.6041 -0.2500 47 1 13.8949 11.0737 -0.5692 48 1 9.3359 3.7110 2.1622 49 1 9.3961 5.4682 2.4389 50 1 6.9310 3.6789 2.6114 51 1 7.7630 4.4771 3.9675 52 1 6.9019 5.4529 2.7532 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707192145.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:07 Heat of formation + Delta-G solvation = -121.290296 kcal Electronic energy + Delta-G solvation = -29965.425622 eV Core-core repulsion = 25771.777911 eV Total energy + Delta-G solvation = -4193.647712 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.44859 -39.18677 -38.10181 -37.52511 -34.55400 -34.09528 -33.82122 -33.35550 -31.45438 -30.98608 -28.87933 -27.48223 -26.53077 -25.74147 -24.17145 -22.94252 -22.03390 -21.54579 -20.49478 -20.13942 -19.14253 -17.88076 -17.48093 -17.20259 -16.92201 -16.28854 -16.00388 -15.47504 -15.20730 -15.01385 -14.73983 -14.52942 -14.32407 -14.08607 -13.97423 -13.75376 -13.45052 -13.32740 -13.08981 -12.65041 -12.56427 -12.53383 -12.40636 -12.15194 -11.99442 -11.67686 -11.46711 -11.39559 -11.36700 -11.31660 -11.27247 -11.06485 -11.00002 -10.65914 -10.56387 -10.42757 -10.19254 -10.12251 -9.96217 -9.46437 -9.20337 -8.54668 -8.02394 -7.93008 -6.39593 -3.80147 2.38957 2.47261 3.21652 3.26933 3.31525 3.53855 3.92823 4.00691 4.24191 4.35972 4.48174 4.48882 4.60795 4.65173 4.70577 4.78073 4.85464 4.96090 5.00145 5.01992 5.09792 5.17870 5.23052 5.26122 5.26758 5.29704 5.41353 5.45026 5.54752 5.60554 5.67534 5.74363 5.76149 5.76971 5.85276 5.94768 5.98772 6.08728 6.14083 6.23856 6.30342 6.35489 6.37662 6.64127 7.08507 7.15155 7.26791 7.57098 8.00932 8.08515 8.64842 9.20931 9.57207 10.09847 10.78263 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.031802 B = 0.001727 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.223251 B =16209.005785 C =16480.437066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.060 3.940 4 O -0.364 6.364 5 C 0.045 3.955 6 C 0.514 3.486 7 O -0.515 6.515 8 N -0.721 5.721 9 C 0.150 3.850 10 H 0.103 0.897 11 C -0.133 4.133 12 C 0.039 3.961 13 N -0.476 5.476 14 C 0.035 3.965 15 C 0.446 3.554 16 O -0.573 6.573 17 N -0.567 5.567 18 C -0.298 4.298 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.904 5.904 22 Si 0.930 3.070 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.057 3.943 27 H 0.054 0.946 28 C -0.110 4.110 29 C -0.149 4.149 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.398 0.602 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.039 0.961 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.052 0.948 46 H 0.391 0.609 47 H 0.271 0.729 48 H 0.073 0.927 49 H 0.069 0.931 50 H 0.053 0.947 51 H 0.055 0.945 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.211 -9.988 3.629 28.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.282 6.282 5 C -0.036 4.036 6 C 0.298 3.702 7 O -0.389 6.389 8 N -0.375 5.375 9 C 0.045 3.955 10 H 0.121 0.879 11 C -0.172 4.172 12 C -0.089 4.089 13 N -0.199 5.199 14 C -0.097 4.097 15 C 0.231 3.769 16 O -0.456 6.456 17 N -0.204 5.204 18 C -0.427 4.427 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.545 5.545 22 Si 0.757 3.243 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.053 4.053 27 H 0.072 0.928 28 C -0.148 4.148 29 C -0.207 4.207 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.232 0.768 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.057 0.943 43 H 0.113 0.887 44 H 0.106 0.894 45 H 0.070 0.930 46 H 0.224 0.776 47 H 0.081 0.919 48 H 0.092 0.908 49 H 0.087 0.913 50 H 0.072 0.928 51 H 0.074 0.926 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -24.794 -11.777 3.543 27.677 hybrid contribution -0.440 2.140 -0.382 2.218 sum -25.235 -9.637 3.161 27.197 Atomic orbital electron populations 1.21697 0.94636 1.02376 1.01979 1.21453 0.95612 0.95362 1.03749 1.22645 0.80440 0.98373 1.00241 1.88020 1.19589 1.25156 1.95429 1.22193 0.91784 0.87034 1.02544 1.20201 0.88487 0.84725 0.76747 1.90754 1.74485 1.26384 1.47236 1.46027 1.06909 1.08509 1.76028 1.21757 0.77682 0.99279 0.96795 0.87889 1.22748 0.99038 0.99610 0.95821 1.23153 0.98856 0.95872 0.91032 1.65029 1.26636 1.21797 1.06471 1.22075 0.96713 0.88981 1.01897 1.19685 0.87680 0.84342 0.85154 1.90525 1.67252 1.36607 1.51265 1.41848 1.13639 1.08027 1.56933 1.19646 0.88692 0.95636 1.38760 0.88009 1.25234 1.00202 0.94892 0.97589 1.69606 1.38125 0.99696 1.47121 0.85931 0.81977 0.77019 0.79371 1.19960 1.21022 1.19911 1.22933 0.91717 0.95736 0.94867 0.92804 1.21460 0.97653 1.03353 0.92344 1.21764 0.97718 1.01403 0.99800 0.92519 0.92522 0.91908 0.90924 0.90927 0.93145 0.93157 0.90297 0.90332 0.76759 0.90140 0.91150 0.94265 0.88662 0.89392 0.93047 0.77609 0.91911 0.90785 0.91270 0.92816 0.92557 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.91 37.16 0.37 -0.29 16 2 C -0.12 -0.80 6.30 -26.73 -0.17 -0.97 16 3 C 0.06 0.40 5.94 37.16 0.22 0.62 16 4 O -0.36 -3.76 9.88 -55.14 -0.54 -4.30 16 5 C 0.04 0.34 6.42 36.01 0.23 0.57 16 6 C 0.51 5.60 7.91 -10.98 -0.09 5.52 16 7 O -0.51 -8.18 16.15 -14.35 -0.23 -8.41 16 8 N -0.72 -6.45 4.77 -52.46 -0.25 -6.70 16 9 C 0.15 1.76 2.40 -66.55 -0.16 1.60 16 10 H 0.10 1.42 7.14 -51.93 -0.37 1.05 16 11 C -0.13 -1.70 6.79 -25.35 -0.17 -1.88 16 12 C 0.04 0.58 6.08 -2.19 -0.01 0.57 16 13 N -0.48 -7.63 4.56 -223.58 -1.02 -8.65 16 14 C 0.04 0.61 5.31 -4.98 -0.03 0.58 16 15 C 0.45 10.47 7.69 -10.98 -0.08 10.38 16 16 O -0.57 -15.57 15.30 5.55 0.08 -15.49 16 17 N -0.57 -14.28 5.29 -10.96 -0.06 -14.34 16 18 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 19 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.49 13.05 55.50 0.72 -23.76 16 22 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 C 0.06 0.68 1.95 -66.07 -0.13 0.55 16 27 H 0.05 0.56 7.61 -51.93 -0.40 0.16 16 28 C -0.11 -1.29 5.58 -26.73 -0.15 -1.44 16 29 C -0.15 -1.37 9.73 37.16 0.36 -1.01 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.40 2.38 8.38 -40.82 -0.34 2.04 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.07 0.81 7.95 -51.93 -0.41 0.40 16 42 H 0.04 0.54 7.67 -51.93 -0.40 0.14 16 43 H 0.10 1.70 7.66 -51.93 -0.40 1.31 16 44 H 0.09 1.38 7.02 -51.93 -0.36 1.01 16 45 H 0.05 0.80 7.64 -51.93 -0.40 0.40 16 46 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 47 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 48 H 0.07 0.96 7.95 -51.93 -0.41 0.55 16 49 H 0.07 0.86 7.18 -51.92 -0.37 0.49 16 50 H 0.05 0.51 7.54 -51.93 -0.39 0.12 16 51 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 52 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 421.83 15.07 6.36 6.36 Total: -1.00 -34.67 421.83 -9.17 -43.84 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -9.16 Total: 8.51 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -0.05 Total: 6.86 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.60 Total: -53.46 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.69 Total: -28.20 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -34.67 -9.17 -43.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707192145.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.452 kcal (2) G-P(sol) polarization free energy of solvation -34.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds