Wall clock time and date at job start Wed Apr 1 2020 01:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.46057 * 2 1 4 4 C 1.54385 * 110.40765 * 237.58804 * 2 1 3 5 5 H 1.09002 * 110.32550 * 336.26419 * 4 2 1 6 6 N 1.46496 * 110.32497 * 98.37065 * 4 2 1 7 7 C 1.34775 * 120.00429 * 203.57292 * 6 4 2 8 8 O 1.21291 * 119.99526 * 359.97438 * 7 6 4 9 9 C 1.50697 * 120.00415 * 179.97438 * 7 6 4 10 10 O 1.42904 * 109.47364 * 179.97438 * 9 7 6 11 11 C 1.42899 * 114.00254 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46765 * 60.00217 * 11 10 9 13 13 C 1.52994 * 109.46944 * 180.02562 * 11 10 9 14 14 C 1.52994 * 109.47235 * 300.00325 * 11 10 9 15 15 C 1.54262 * 105.14590 * 217.31678 * 4 2 1 16 16 C 1.54375 * 105.06151 * 0.04828 * 15 4 2 17 17 N 1.48556 * 104.59344 * 23.85777 * 16 15 4 18 18 C 1.46903 * 111.00051 * 200.95769 * 17 16 15 19 19 C 1.50700 * 109.47029 * 290.12426 * 18 17 16 20 20 O 1.21297 * 119.99891 * 359.97438 * 19 18 17 21 21 N 1.34776 * 120.00452 * 179.97438 * 19 18 17 22 22 C 1.37098 * 120.00565 * 180.02562 * 21 19 18 23 23 H 1.08005 * 119.99472 * 359.97438 * 22 21 19 24 24 C 1.38942 * 120.00103 * 180.02562 * 22 21 19 25 25 N 1.31417 * 120.00123 * 179.97438 * 24 22 21 26 26 Si 1.86796 * 120.00207 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47467 * 89.99861 * 26 24 22 28 28 H 1.48507 * 109.47443 * 210.00183 * 26 24 22 29 29 H 1.48504 * 109.47215 * 330.00212 * 26 24 22 30 30 H 1.09000 * 109.46858 * 182.41298 * 1 2 3 31 31 H 1.08994 * 109.46801 * 302.41211 * 1 2 3 32 32 H 1.08994 * 109.47187 * 62.41209 * 1 2 3 33 33 H 0.97007 * 120.00255 * 23.57045 * 6 4 2 34 34 H 1.09002 * 109.47274 * 299.99655 * 9 7 6 35 35 H 1.08999 * 109.47244 * 59.99746 * 9 7 6 36 36 H 1.08999 * 109.46772 * 60.00053 * 12 11 10 37 37 H 1.08992 * 109.46698 * 179.97438 * 12 11 10 38 38 H 1.08998 * 109.47397 * 299.99959 * 12 11 10 39 39 H 1.08997 * 109.47267 * 60.00615 * 13 11 10 40 40 H 1.09005 * 109.46849 * 180.02562 * 13 11 10 41 41 H 1.08999 * 109.47452 * 300.00473 * 13 11 10 42 42 H 1.09004 * 109.47467 * 59.99807 * 14 11 10 43 43 H 1.08995 * 109.47068 * 179.97438 * 14 11 10 44 44 H 1.08997 * 109.47169 * 300.00143 * 14 11 10 45 45 H 1.08997 * 110.32128 * 118.95254 * 15 4 2 46 46 H 1.09002 * 110.32386 * 241.15042 * 15 4 2 47 47 H 1.09009 * 110.40529 * 142.62988 * 16 15 4 48 48 H 1.08990 * 110.41629 * 265.06956 * 16 15 4 49 49 H 1.09001 * 109.46764 * 50.12109 * 18 17 16 50 50 H 1.08996 * 109.47572 * 170.12319 * 18 17 16 51 51 H 0.97008 * 119.99370 * 359.97438 * 21 19 18 52 52 H 0.96996 * 120.00320 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 6 2.0684 -0.7756 -1.2215 5 1 1.3234 -1.4880 -1.5760 6 7 2.4332 0.1536 -2.2938 7 6 2.4674 -0.2723 -3.5720 8 8 2.1965 -1.4251 -3.8345 9 6 2.8422 0.6836 -4.6750 10 8 2.8072 0.0005 -5.9298 11 6 3.1480 0.8218 -7.0484 12 6 4.5674 1.3642 -6.8691 13 6 3.0771 -0.0089 -8.3313 14 6 2.1640 1.9895 -7.1425 15 6 3.3188 -1.5188 -0.7080 16 6 3.4318 -1.1316 0.7821 17 7 2.0512 -0.7495 1.1753 18 6 2.0609 0.0966 2.3762 19 6 2.4695 -0.7288 3.5690 20 8 2.7268 -1.9062 3.4322 21 7 2.5490 -0.1588 4.7877 22 6 2.9213 -0.9096 5.8727 23 1 3.1504 -1.9580 5.7509 24 6 3.0027 -0.3220 7.1292 25 7 3.3590 -1.0418 8.1694 26 14 2.6057 1.4911 7.3399 27 1 1.1587 1.6503 7.6330 28 1 3.4024 2.0449 8.4642 29 1 2.9406 2.2197 6.0899 30 1 -0.3633 -1.0268 0.0433 31 1 -0.3633 0.5508 0.8675 32 1 -0.3633 0.4759 -0.9108 33 1 2.6503 1.0754 -2.0838 34 1 2.1352 1.5131 -4.6928 35 1 3.8472 1.0665 -4.4981 36 1 5.2684 0.5322 -6.8021 37 1 4.8275 1.9902 -7.7226 38 1 4.6175 1.9561 -5.9552 39 1 2.0658 -0.3949 -8.4588 40 1 3.3376 0.6175 -9.1845 41 1 3.7779 -0.8410 -8.2645 42 1 2.2140 2.5814 -6.2285 43 1 2.4242 2.6161 -7.9955 44 1 1.1528 1.6031 -7.2701 45 1 3.1877 -2.5960 -0.8105 46 1 4.2043 -1.1910 -1.2526 47 1 3.7730 -1.9830 1.3712 48 1 4.1097 -0.2871 0.9052 49 1 2.7697 0.9133 2.2394 50 1 1.0638 0.5048 2.5412 51 1 2.3436 0.7829 4.8969 52 1 3.4155 -0.6317 9.0465 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707250390.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:14:38 Heat of formation + Delta-G solvation = -106.841251 kcal Electronic energy + Delta-G solvation = -30162.655240 eV Core-core repulsion = 25969.634086 eV Total energy + Delta-G solvation = -4193.021154 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.49135 -39.55061 -38.67709 -37.68829 -34.59140 -33.87625 -33.85103 -31.75435 -31.39517 -31.16842 -28.81921 -27.92390 -27.50672 -26.44470 -25.06266 -23.96761 -21.68230 -20.65708 -20.48173 -20.19900 -19.33377 -18.31910 -17.62140 -17.04843 -16.47308 -16.22871 -15.95917 -15.39166 -15.24363 -14.90529 -14.86248 -14.70324 -14.14448 -13.98753 -13.82124 -13.69599 -13.46450 -13.41187 -13.08488 -12.70827 -12.61596 -12.50228 -12.44936 -12.32035 -12.21508 -12.16601 -11.88405 -11.79199 -11.63917 -11.43485 -11.32723 -11.25322 -11.07945 -10.90477 -10.67244 -10.60660 -10.04337 -9.97986 -9.94846 -9.56179 -9.25590 -8.65616 -8.19813 -8.13202 -6.31044 -3.82461 2.37723 2.45705 3.00532 3.05573 3.13771 3.52376 3.73390 3.97400 4.09619 4.25317 4.32896 4.35075 4.50127 4.56044 4.57707 4.67034 4.76877 4.89663 4.99154 4.99741 5.06614 5.19088 5.19953 5.21501 5.24669 5.28816 5.36710 5.37053 5.39725 5.51799 5.53575 5.57563 5.69910 5.76059 5.77111 5.79652 5.81619 5.90819 5.93755 6.10686 6.21002 6.29606 6.40371 6.71209 7.01567 7.04964 7.23587 7.58097 7.99399 8.14442 8.60183 8.95470 9.42337 9.83527 10.82147 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.026875 B = 0.001810 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.611781 B =15469.149638 C =15666.860026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.052 3.948 3 H 0.054 0.946 4 C 0.148 3.852 5 H 0.103 0.897 6 N -0.723 5.723 7 C 0.514 3.486 8 O -0.514 6.514 9 C 0.039 3.961 10 O -0.350 6.350 11 C 0.104 3.896 12 C -0.181 4.181 13 C -0.137 4.137 14 C -0.180 4.180 15 C -0.133 4.133 16 C 0.037 3.963 17 N -0.476 5.476 18 C 0.033 3.967 19 C 0.454 3.546 20 O -0.557 6.557 21 N -0.592 5.592 22 C -0.304 4.304 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.882 5.882 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.271 1.271 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.398 0.602 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.103 0.897 48 H 0.038 0.962 49 H 0.050 0.950 50 H 0.091 0.909 51 H 0.369 0.631 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.315 12.901 -29.818 32.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.058 4.058 3 H 0.072 0.928 4 C 0.043 3.957 5 H 0.121 0.879 6 N -0.377 5.377 7 C 0.299 3.701 8 O -0.388 6.388 9 C -0.041 4.041 10 O -0.268 6.268 11 C 0.065 3.935 12 C -0.238 4.238 13 C -0.194 4.194 14 C -0.238 4.238 15 C -0.172 4.172 16 C -0.091 4.091 17 N -0.201 5.201 18 C -0.099 4.099 19 C 0.239 3.761 20 O -0.438 6.438 21 N -0.232 5.232 22 C -0.432 4.432 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.522 5.522 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.232 0.768 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.088 0.912 47 H 0.122 0.878 48 H 0.056 0.944 49 H 0.068 0.932 50 H 0.109 0.891 51 H 0.202 0.798 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.677 10.550 -29.764 31.623 hybrid contribution 0.474 3.143 0.530 3.222 sum -1.204 13.693 -29.234 32.304 Atomic orbital electron populations 1.21714 0.93114 1.03267 1.01303 1.22928 0.96803 0.95608 0.90435 0.92826 1.21768 0.97384 0.91099 0.85464 0.87926 1.46028 1.71198 1.14411 1.06097 1.20243 0.77759 0.88927 0.83210 1.90756 1.46545 1.18652 1.82875 1.22222 1.02050 0.94833 0.85001 1.88119 1.90066 1.35958 1.12700 1.21607 0.93548 0.91033 0.87331 1.22460 0.96860 1.01957 1.02525 1.21743 1.03395 1.00169 0.94139 1.22459 1.00384 0.98355 1.02576 1.22755 0.97214 1.01715 0.95509 1.23193 0.89261 1.01648 0.94971 1.65203 1.19108 1.35230 1.00530 1.22104 1.01924 0.94549 0.91359 1.19568 0.84399 0.88623 0.83469 1.90558 1.52693 1.16020 1.84557 1.42200 1.62610 1.10785 1.07612 1.19425 1.42724 0.96843 0.84240 0.86264 1.25030 0.97635 0.98281 0.95234 1.69621 1.46847 1.36096 0.99612 0.86676 0.79275 0.84968 0.78457 1.19615 1.20219 1.19623 0.91164 0.92258 0.92455 0.76804 0.90180 0.90178 0.91423 0.91247 0.92199 0.91581 0.90997 0.91568 0.92213 0.91250 0.91447 0.90067 0.91166 0.87834 0.94368 0.93202 0.89077 0.79801 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.31 37.16 0.35 -1.09 16 2 C 0.05 0.59 2.60 -65.92 -0.17 0.41 16 3 H 0.05 0.52 7.60 -51.93 -0.39 0.12 16 4 C 0.15 1.70 2.93 -66.55 -0.19 1.51 16 5 H 0.10 1.38 7.32 -51.93 -0.38 1.00 16 6 N -0.72 -6.47 5.03 -52.46 -0.26 -6.73 16 7 C 0.51 5.64 7.90 -10.99 -0.09 5.55 16 8 O -0.51 -8.18 16.17 -14.36 -0.23 -8.41 16 9 C 0.04 0.30 5.62 36.00 0.20 0.51 16 10 O -0.35 -3.55 9.52 -55.14 -0.52 -4.08 16 11 C 0.10 0.70 1.14 -90.62 -0.10 0.60 16 12 C -0.18 -0.96 8.25 37.16 0.31 -0.65 16 13 C -0.14 -0.85 8.84 37.15 0.33 -0.52 16 14 C -0.18 -0.93 8.25 37.15 0.31 -0.62 16 15 C -0.13 -1.71 6.79 -25.35 -0.17 -1.88 16 16 C 0.04 0.56 5.80 -2.19 -0.01 0.55 16 17 N -0.48 -7.37 4.75 -223.35 -1.06 -8.43 16 18 C 0.03 0.53 5.25 -4.97 -0.03 0.50 16 19 C 0.45 10.17 7.58 -10.99 -0.08 10.09 16 20 O -0.56 -14.76 14.42 5.54 0.08 -14.68 16 21 N -0.59 -13.95 5.09 -10.96 -0.06 -14.00 16 22 C -0.30 -8.54 10.16 -14.94 -0.15 -8.69 16 23 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 24 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 25 N -0.88 -25.69 13.96 55.50 0.77 -24.92 16 26 Si 0.88 19.19 27.74 -169.99 -4.71 14.47 16 27 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 28 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 29 H -0.27 -5.34 6.52 56.52 0.37 -4.98 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.61 7.46 -51.93 -0.39 0.22 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.40 2.32 8.36 -40.82 -0.34 1.98 16 34 H 0.08 0.44 6.42 -51.93 -0.33 0.10 16 35 H 0.08 0.46 6.42 -51.93 -0.33 0.13 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.06 0.27 6.54 -51.93 -0.34 -0.07 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.26 6.54 -51.93 -0.34 -0.08 16 43 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.07 0.83 7.95 -51.93 -0.41 0.42 16 47 H 0.10 1.92 6.91 -51.92 -0.36 1.56 16 48 H 0.04 0.54 7.82 -51.93 -0.41 0.13 16 49 H 0.05 0.71 7.88 -51.93 -0.41 0.30 16 50 H 0.09 1.29 7.35 -51.93 -0.38 0.91 16 51 H 0.37 7.61 5.76 -40.82 -0.24 7.37 16 52 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 LS Contribution 410.78 15.07 6.19 6.19 Total: -1.00 -35.77 410.78 -8.25 -44.02 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -8.84 Total: 9.29 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 0.39 Total: 7.29 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -0.61 Total: -54.08 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.68 Total: -27.17 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.71 Total: 14.47 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.77 -8.25 -44.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707250390.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.819 kcal (2) G-P(sol) polarization free energy of solvation -35.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds