Wall clock time and date at job start Wed Apr 1 2020 01:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.46057 * 2 1 4 4 C 1.54385 * 110.40765 * 237.58804 * 2 1 3 5 5 H 1.09002 * 110.32550 * 336.26419 * 4 2 1 6 6 N 1.46496 * 110.32497 * 98.37065 * 4 2 1 7 7 C 1.34775 * 120.00429 * 203.57292 * 6 4 2 8 8 O 1.21291 * 119.99526 * 359.97438 * 7 6 4 9 9 C 1.50697 * 120.00415 * 179.97438 * 7 6 4 10 10 O 1.42904 * 109.47364 * 179.97438 * 9 7 6 11 11 C 1.42899 * 114.00254 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46765 * 60.00217 * 11 10 9 13 13 C 1.52994 * 109.46944 * 180.02562 * 11 10 9 14 14 C 1.52994 * 109.47235 * 300.00325 * 11 10 9 15 15 C 1.54262 * 105.14590 * 217.31678 * 4 2 1 16 16 C 1.54375 * 105.06151 * 0.04828 * 15 4 2 17 17 N 1.48556 * 104.59344 * 23.85777 * 16 15 4 18 18 C 1.46903 * 111.00051 * 200.95769 * 17 16 15 19 19 C 1.50700 * 109.47029 * 290.12426 * 18 17 16 20 20 O 1.21297 * 119.99891 * 359.97438 * 19 18 17 21 21 N 1.34776 * 120.00452 * 179.97438 * 19 18 17 22 22 C 1.37098 * 120.00565 * 180.02562 * 21 19 18 23 23 H 1.08005 * 119.99472 * 359.97438 * 22 21 19 24 24 C 1.38942 * 120.00103 * 180.02562 * 22 21 19 25 25 N 1.31417 * 120.00123 * 179.97438 * 24 22 21 26 26 Si 1.86796 * 120.00207 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47467 * 89.99861 * 26 24 22 28 28 H 1.48507 * 109.47443 * 210.00183 * 26 24 22 29 29 H 1.48504 * 109.47215 * 330.00212 * 26 24 22 30 30 H 1.09000 * 109.46858 * 182.41298 * 1 2 3 31 31 H 1.08994 * 109.46801 * 302.41211 * 1 2 3 32 32 H 1.08994 * 109.47187 * 62.41209 * 1 2 3 33 33 H 0.97007 * 120.00255 * 23.57045 * 6 4 2 34 34 H 1.09002 * 109.47274 * 299.99655 * 9 7 6 35 35 H 1.08999 * 109.47244 * 59.99746 * 9 7 6 36 36 H 1.08999 * 109.46772 * 60.00053 * 12 11 10 37 37 H 1.08992 * 109.46698 * 179.97438 * 12 11 10 38 38 H 1.08998 * 109.47397 * 299.99959 * 12 11 10 39 39 H 1.08997 * 109.47267 * 60.00615 * 13 11 10 40 40 H 1.09005 * 109.46849 * 180.02562 * 13 11 10 41 41 H 1.08999 * 109.47452 * 300.00473 * 13 11 10 42 42 H 1.09004 * 109.47467 * 59.99807 * 14 11 10 43 43 H 1.08995 * 109.47068 * 179.97438 * 14 11 10 44 44 H 1.08997 * 109.47169 * 300.00143 * 14 11 10 45 45 H 1.08997 * 110.32128 * 118.95254 * 15 4 2 46 46 H 1.09002 * 110.32386 * 241.15042 * 15 4 2 47 47 H 1.09009 * 110.40529 * 142.62988 * 16 15 4 48 48 H 1.08990 * 110.41629 * 265.06956 * 16 15 4 49 49 H 1.09001 * 109.46764 * 50.12109 * 18 17 16 50 50 H 1.08996 * 109.47572 * 170.12319 * 18 17 16 51 51 H 0.97008 * 119.99370 * 359.97438 * 21 19 18 52 52 H 0.96996 * 120.00320 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 6 2.0684 -0.7756 -1.2215 5 1 1.3234 -1.4880 -1.5760 6 7 2.4332 0.1536 -2.2938 7 6 2.4674 -0.2723 -3.5720 8 8 2.1965 -1.4251 -3.8345 9 6 2.8422 0.6836 -4.6750 10 8 2.8072 0.0005 -5.9298 11 6 3.1480 0.8218 -7.0484 12 6 4.5674 1.3642 -6.8691 13 6 3.0771 -0.0089 -8.3313 14 6 2.1640 1.9895 -7.1425 15 6 3.3188 -1.5188 -0.7080 16 6 3.4318 -1.1316 0.7821 17 7 2.0512 -0.7495 1.1753 18 6 2.0609 0.0966 2.3762 19 6 2.4695 -0.7288 3.5690 20 8 2.7268 -1.9062 3.4322 21 7 2.5490 -0.1588 4.7877 22 6 2.9213 -0.9096 5.8727 23 1 3.1504 -1.9580 5.7509 24 6 3.0027 -0.3220 7.1292 25 7 3.3590 -1.0418 8.1694 26 14 2.6057 1.4911 7.3399 27 1 1.1587 1.6503 7.6330 28 1 3.4024 2.0449 8.4642 29 1 2.9406 2.2197 6.0899 30 1 -0.3633 -1.0268 0.0433 31 1 -0.3633 0.5508 0.8675 32 1 -0.3633 0.4759 -0.9108 33 1 2.6503 1.0754 -2.0838 34 1 2.1352 1.5131 -4.6928 35 1 3.8472 1.0665 -4.4981 36 1 5.2684 0.5322 -6.8021 37 1 4.8275 1.9902 -7.7226 38 1 4.6175 1.9561 -5.9552 39 1 2.0658 -0.3949 -8.4588 40 1 3.3376 0.6175 -9.1845 41 1 3.7779 -0.8410 -8.2645 42 1 2.2140 2.5814 -6.2285 43 1 2.4242 2.6161 -7.9955 44 1 1.1528 1.6031 -7.2701 45 1 3.1877 -2.5960 -0.8105 46 1 4.2043 -1.1910 -1.2526 47 1 3.7730 -1.9830 1.3712 48 1 4.1097 -0.2871 0.9052 49 1 2.7697 0.9133 2.2394 50 1 1.0638 0.5048 2.5412 51 1 2.3436 0.7829 4.8969 52 1 3.4155 -0.6317 9.0465 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707250390.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:14:35 Heat of formation + Delta-G solvation = -135.508972 kcal Electronic energy + Delta-G solvation = -30163.898366 eV Core-core repulsion = 25969.634086 eV Total energy + Delta-G solvation = -4194.264280 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.41236 -40.57567 -39.78258 -38.98475 -36.05750 -35.41987 -34.38627 -33.75077 -32.48677 -32.22954 -29.51963 -28.29575 -28.27406 -27.71884 -25.97316 -25.68668 -22.71721 -21.57219 -21.47724 -21.09602 -20.85150 -20.14478 -18.37733 -17.94047 -17.56376 -17.19013 -16.94535 -16.70086 -16.38089 -16.27927 -15.95163 -15.46236 -15.35274 -15.20338 -14.87527 -14.55031 -14.48812 -14.36939 -14.24023 -14.10193 -13.88449 -13.65257 -13.12610 -13.01024 -12.89550 -12.86126 -12.77289 -12.73969 -12.64204 -12.45718 -12.39877 -12.36915 -12.19141 -12.09511 -11.95877 -11.69175 -11.56239 -11.47613 -10.82498 -10.57185 -10.41234 -10.22740 -10.12812 -9.39578 -8.39599 -6.00641 1.30517 1.37296 1.45775 1.55864 1.73515 1.98508 2.24614 2.63318 3.00527 3.15676 3.23895 3.40111 3.72077 3.74358 3.91568 3.98144 4.02316 4.10067 4.13199 4.17839 4.19070 4.29314 4.31340 4.37295 4.43056 4.49414 4.67830 4.68931 4.69822 4.81276 4.83018 4.83351 4.89018 4.96044 4.96531 5.02261 5.03809 5.13961 5.18483 5.34374 5.38170 5.38819 5.39117 5.54413 5.85762 5.93396 6.04301 6.20067 6.55574 6.61718 6.90679 7.23527 7.41904 8.00371 8.78244 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.026875 B = 0.001810 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.611781 B =15469.149638 C =15666.860026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.061 3.939 3 H 0.091 0.909 4 C 0.155 3.845 5 H 0.079 0.921 6 N -0.703 5.703 7 C 0.511 3.489 8 O -0.573 6.573 9 C 0.042 3.958 10 O -0.388 6.388 11 C 0.096 3.904 12 C -0.178 4.178 13 C -0.140 4.140 14 C -0.177 4.177 15 C -0.126 4.126 16 C 0.041 3.959 17 N -0.507 5.507 18 C 0.046 3.954 19 C 0.451 3.549 20 O -0.608 6.608 21 N -0.592 5.592 22 C -0.327 4.327 23 H 0.052 0.948 24 C -0.017 4.017 25 N -0.937 5.937 26 Si 0.967 3.033 27 H -0.257 1.257 28 H -0.277 1.277 29 H -0.228 1.228 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.419 0.581 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.053 0.947 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.094 0.906 41 H 0.052 0.948 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.083 0.917 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.087 0.913 50 H 0.123 0.877 51 H 0.390 0.610 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.968 18.732 -31.711 36.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.047 4.047 3 H 0.109 0.891 4 C 0.049 3.951 5 H 0.097 0.903 6 N -0.358 5.358 7 C 0.298 3.702 8 O -0.451 6.451 9 C -0.037 4.037 10 O -0.307 6.307 11 C 0.057 3.943 12 C -0.235 4.235 13 C -0.197 4.197 14 C -0.234 4.234 15 C -0.165 4.165 16 C -0.087 4.087 17 N -0.233 5.233 18 C -0.086 4.086 19 C 0.239 3.761 20 O -0.492 6.492 21 N -0.234 5.234 22 C -0.457 4.457 23 H 0.070 0.930 24 C -0.215 4.215 25 N -0.577 5.577 26 Si 0.787 3.213 27 H -0.182 1.182 28 H -0.202 1.202 29 H -0.151 1.151 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.257 0.743 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.112 0.888 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.102 0.898 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.105 0.895 50 H 0.141 0.859 51 H 0.225 0.775 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.328 16.439 -31.684 35.771 hybrid contribution 0.705 1.144 1.058 1.710 sum -1.623 17.583 -30.626 35.352 Atomic orbital electron populations 1.21732 0.92338 1.02301 1.02909 1.22960 0.97226 0.96617 0.87900 0.89131 1.21476 0.95915 0.91335 0.86333 0.90274 1.45781 1.70160 1.14939 1.04931 1.20945 0.76428 0.88641 0.84209 1.90739 1.49292 1.21340 1.83773 1.22333 1.04162 0.94049 0.83131 1.88083 1.90559 1.38018 1.14086 1.21833 0.94893 0.91289 0.86265 1.22444 0.95448 1.01769 1.03880 1.21802 1.02359 1.00301 0.95236 1.22435 0.99211 0.97845 1.03953 1.22655 0.98684 1.00692 0.94491 1.23014 0.89805 1.00562 0.95295 1.65092 1.19249 1.36995 1.01918 1.22024 1.04344 0.93833 0.88355 1.20907 0.81921 0.88608 0.84708 1.90552 1.54159 1.18940 1.85562 1.42007 1.63161 1.11384 1.06862 1.18980 1.44895 0.94965 0.86813 0.92968 1.26145 0.96433 1.05142 0.93829 1.69816 1.48044 1.39349 1.00532 0.85342 0.79473 0.76438 0.80095 1.18185 1.20172 1.15119 0.93471 0.91280 0.90205 0.74296 0.87210 0.87621 0.92776 0.89632 0.90999 0.92711 0.88754 0.92898 0.90938 0.89667 0.92540 0.92396 0.89811 0.92545 0.92616 0.89499 0.85927 0.77463 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.31 71.98 0.67 -1.75 16 2 C 0.06 1.18 2.60 45.01 0.12 1.30 16 3 H 0.09 1.16 7.60 -2.39 -0.02 1.14 16 4 C 0.16 3.35 2.93 45.89 0.13 3.48 16 5 H 0.08 2.14 7.32 -2.39 -0.02 2.12 16 6 N -0.70 -10.49 5.03 -438.28 -2.21 -12.69 16 7 C 0.51 10.37 7.90 87.66 0.69 11.06 16 8 O -0.57 -18.49 16.17 15.97 0.26 -18.23 16 9 C 0.04 0.54 5.62 71.23 0.40 0.94 16 10 O -0.39 -7.42 9.52 -129.95 -1.24 -8.66 16 11 C 0.10 1.12 1.14 -10.80 -0.01 1.10 16 12 C -0.18 -1.43 8.25 71.98 0.59 -0.84 16 13 C -0.14 -1.63 8.84 71.98 0.64 -0.99 16 14 C -0.18 -1.31 8.25 71.98 0.59 -0.72 16 15 C -0.13 -3.24 6.79 31.49 0.21 -3.03 16 16 C 0.04 1.24 5.80 86.45 0.50 1.74 16 17 N -0.51 -14.86 4.75 -860.56 -4.09 -18.95 16 18 C 0.05 1.33 5.25 85.56 0.45 1.78 16 19 C 0.45 20.14 7.58 87.66 0.66 20.81 16 20 O -0.61 -33.95 14.42 -3.08 -0.04 -34.00 16 21 N -0.59 -27.52 5.09 -306.98 -1.56 -29.09 16 22 C -0.33 -19.17 10.16 84.04 0.85 -18.32 16 23 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 24 C -0.02 -0.95 5.50 84.92 0.47 -0.49 16 25 N -0.94 -56.64 13.96 21.66 0.30 -56.34 16 26 Si 0.97 38.14 27.74 68.60 1.90 40.04 16 27 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 28 H -0.28 -10.88 7.11 99.48 0.71 -10.18 16 29 H -0.23 -7.38 6.52 99.48 0.65 -6.73 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 1.12 7.46 -2.39 -0.02 1.10 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.42 2.82 8.36 -92.70 -0.78 2.04 16 34 H 0.11 0.74 6.42 -2.39 -0.02 0.72 16 35 H 0.11 0.80 6.42 -2.39 -0.02 0.78 16 36 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.07 0.39 6.54 -2.39 -0.02 0.38 16 39 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.09 0.61 8.14 -2.38 -0.02 0.60 16 41 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.07 0.34 6.54 -2.39 -0.02 0.32 16 43 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 46 H 0.08 1.89 7.95 -2.39 -0.02 1.88 16 47 H 0.06 2.23 6.91 -2.38 -0.02 2.21 16 48 H 0.06 1.45 7.82 -2.39 -0.02 1.43 16 49 H 0.09 1.96 7.88 -2.39 -0.02 1.94 16 50 H 0.12 2.87 7.35 -2.39 -0.02 2.85 16 51 H 0.39 14.73 5.76 -92.70 -0.53 14.19 16 52 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -88.48 410.78 -0.14 -88.61 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: -0.44 Total: 33.21 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 6.98 Total: 16.09 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -7.56 Total: -117.07 kcal Atomic # 8 Polarization: -59.86 SS G_CDS: -1.02 Total: -60.88 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 1.90 Total: 40.04 kcal Total: -88.48 -0.14 -88.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707250390.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.895 kcal (2) G-P(sol) polarization free energy of solvation -88.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds