Wall clock time and date at job start Wed Apr 1 2020 00:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47101 * 2 1 4 4 O 1.42906 * 109.47004 * 180.02562 * 3 2 1 5 5 C 1.42898 * 113.99706 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46575 * 179.97438 * 5 4 3 7 7 O 1.21273 * 120.00397 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99581 * 179.97438 * 6 5 4 9 9 C 1.46926 * 120.63336 * 0.02562 * 8 6 5 10 10 C 1.53191 * 108.89109 * 233.68039 * 9 8 6 11 11 C 1.53035 * 109.31327 * 305.29292 * 10 9 8 12 12 C 1.53038 * 109.54175 * 61.36680 * 11 10 9 13 13 H 1.09000 * 109.49410 * 58.61748 * 12 11 10 14 14 N 1.46897 * 109.49985 * 178.68566 * 12 11 10 15 15 C 1.46899 * 111.00372 * 66.04618 * 14 12 11 16 16 C 1.46900 * 110.99885 * 190.00149 * 14 12 11 17 17 C 1.50703 * 109.47287 * 169.99937 * 16 14 12 18 18 O 1.21297 * 119.99889 * 359.97438 * 17 16 14 19 19 N 1.34772 * 120.00221 * 180.02562 * 17 16 14 20 20 C 1.37094 * 119.99981 * 179.97438 * 19 17 16 21 21 H 1.07996 * 120.00385 * 359.97438 * 20 19 17 22 22 C 1.38960 * 119.99869 * 179.97438 * 20 19 17 23 23 N 1.31406 * 119.99797 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99744 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47093 * 90.00124 * 24 22 20 26 26 H 1.48505 * 109.46961 * 210.00274 * 24 22 20 27 27 H 1.48501 * 109.47204 * 329.99882 * 24 22 20 28 28 C 1.47207 * 120.81118 * 180.14557 * 8 6 5 29 29 H 1.08995 * 109.47384 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47095 * 300.00370 * 1 2 3 31 31 H 1.08999 * 109.47303 * 59.99750 * 1 2 3 32 32 H 1.09000 * 109.46639 * 240.00161 * 2 1 3 33 33 H 1.08999 * 109.47303 * 120.00250 * 2 1 3 34 34 H 1.08992 * 109.47119 * 60.00265 * 3 2 1 35 35 H 1.09003 * 109.47041 * 299.99556 * 3 2 1 36 36 H 1.09001 * 109.47107 * 60.00176 * 5 4 3 37 37 H 1.08994 * 109.47373 * 299.99348 * 5 4 3 38 38 H 1.09002 * 109.58861 * 113.82042 * 9 8 6 39 39 H 1.08996 * 109.58519 * 353.53933 * 9 8 6 40 40 H 1.09003 * 109.49975 * 65.24379 * 10 9 8 41 41 H 1.09000 * 109.49553 * 185.30642 * 10 9 8 42 42 H 1.09003 * 109.46332 * 181.39145 * 11 10 9 43 43 H 1.09004 * 109.45942 * 301.34050 * 11 10 9 44 44 H 1.08994 * 109.47263 * 59.99777 * 15 14 12 45 45 H 1.08998 * 109.47021 * 180.02562 * 15 14 12 46 46 H 1.08999 * 109.46714 * 300.00113 * 15 14 12 47 47 H 1.09006 * 109.47022 * 289.99449 * 16 14 12 48 48 H 1.09000 * 109.47323 * 49.99364 * 16 14 12 49 49 H 0.97001 * 119.99712 * 359.97438 * 19 17 16 50 50 H 0.97000 * 119.99408 * 179.97438 * 23 22 20 51 51 H 1.08996 * 109.53610 * 6.53286 * 28 8 6 52 52 H 1.09002 * 109.68003 * 246.22753 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0502 2.7479 -0.0001 6 6 5.5526 2.6288 -0.0001 7 8 6.0741 1.5340 -0.0001 8 7 6.3165 3.7392 -0.0002 9 6 5.6993 5.0726 0.0003 10 6 6.2695 5.8835 -1.1675 11 6 7.7969 5.9011 -1.0735 12 6 8.3323 4.4708 -1.1718 13 1 8.0121 4.0266 -2.1143 14 7 9.8000 4.4915 -1.1131 15 6 10.2679 4.9498 0.2019 16 6 10.3586 3.1729 -1.4404 17 6 11.8515 3.2880 -1.6111 18 8 12.3964 4.3630 -1.4741 19 7 12.5809 2.1969 -1.9171 20 6 13.9389 2.3017 -2.0729 21 1 14.4242 3.2588 -1.9509 22 6 14.6911 1.1765 -2.3878 23 7 14.1006 0.0121 -2.5367 24 14 16.5415 1.3194 -2.5995 25 1 17.2082 1.0934 -1.2919 26 1 17.0081 0.3019 -3.5754 27 1 16.8793 2.6763 -3.0994 28 6 7.7855 3.6438 -0.0035 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.7290 3.2883 0.8904 37 1 3.7283 3.2893 -0.8896 38 1 5.9226 5.5782 0.9398 39 1 4.6198 4.9755 -0.1148 40 1 5.9683 5.4257 -2.1098 41 1 5.8899 6.9042 -1.1213 42 1 8.2042 6.4982 -1.8894 43 1 8.0970 6.3366 -0.1204 44 1 9.8967 4.2766 0.9745 45 1 11.3577 4.9560 0.2178 46 1 9.8963 5.9574 0.3887 47 1 10.1381 2.4744 -0.6331 48 1 9.9138 2.8096 -2.3668 49 1 12.1450 1.3373 -2.0270 50 1 14.6256 -0.7732 -2.7569 51 1 8.0828 2.6019 -0.1225 52 1 8.1806 4.0315 0.9355 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713390554.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:10 Heat of formation + Delta-G solvation = -108.020263 kcal Electronic energy + Delta-G solvation = -30333.609388 eV Core-core repulsion = 26140.537108 eV Total energy + Delta-G solvation = -4193.072280 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.62515 -39.04315 -38.16821 -37.47883 -35.74915 -34.07040 -33.82494 -32.64834 -31.20317 -30.47881 -28.68124 -27.76046 -26.26074 -25.45994 -24.95083 -24.08769 -22.22812 -21.96520 -20.26334 -19.18802 -19.04284 -17.79110 -17.75059 -16.92067 -16.80457 -16.36124 -15.76097 -15.56793 -15.17651 -15.05635 -14.74231 -14.67790 -14.36323 -14.28565 -13.93913 -13.74197 -13.57281 -13.25194 -13.11677 -13.02027 -12.76949 -12.50570 -12.48011 -12.35213 -12.07566 -11.60545 -11.48080 -11.36909 -11.32495 -11.29897 -11.27638 -11.13183 -10.97292 -10.82906 -10.53100 -10.35718 -10.17437 -10.08904 -9.90092 -9.43558 -9.06628 -8.37352 -7.92675 -7.75546 -6.36906 -3.77833 2.37274 2.41414 3.20943 3.29319 3.35143 3.41662 3.93904 3.96835 4.19546 4.26253 4.51711 4.52673 4.59603 4.62280 4.68722 4.71676 4.78246 4.83009 4.88871 5.00995 5.04938 5.05278 5.15493 5.20518 5.27348 5.29718 5.34032 5.47522 5.50842 5.58697 5.61389 5.70704 5.71663 5.77401 5.80281 5.82489 5.96718 6.00891 6.12545 6.14438 6.19822 6.33387 6.57527 6.68636 7.12547 7.27285 7.39052 7.59473 7.97437 8.10825 8.66519 9.22485 9.59475 10.11157 10.80784 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013854 B = 0.002115 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.554015 B =13235.008478 C =14965.026998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.060 3.940 4 O -0.364 6.364 5 C 0.048 3.952 6 C 0.513 3.487 7 O -0.515 6.515 8 N -0.608 5.608 9 C 0.104 3.896 10 C -0.134 4.134 11 C -0.111 4.111 12 C 0.072 3.928 13 H 0.084 0.916 14 N -0.504 5.504 15 C 0.014 3.986 16 C 0.042 3.958 17 C 0.445 3.555 18 O -0.579 6.579 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.077 3.923 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.019 0.981 45 H 0.097 0.903 46 H 0.062 0.938 47 H 0.050 0.950 48 H 0.088 0.912 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.094 0.906 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.962 7.912 5.908 29.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.282 6.282 5 C -0.032 4.032 6 C 0.300 3.700 7 O -0.389 6.389 8 N -0.345 5.345 9 C -0.019 4.019 10 C -0.172 4.172 11 C -0.149 4.149 12 C -0.038 4.038 13 H 0.102 0.898 14 N -0.227 5.227 15 C -0.134 4.134 16 C -0.089 4.089 17 C 0.230 3.770 18 O -0.463 6.463 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.542 5.542 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.047 4.047 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.037 0.963 45 H 0.116 0.884 46 H 0.081 0.919 47 H 0.068 0.932 48 H 0.106 0.894 49 H 0.226 0.774 50 H 0.081 0.919 51 H 0.112 0.888 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -26.931 7.988 5.591 28.642 hybrid contribution 0.145 -0.830 0.408 0.936 sum -26.786 7.159 5.999 28.368 Atomic orbital electron populations 1.21695 0.94632 1.02388 1.01931 1.21458 0.95601 0.95352 1.03835 1.22642 0.80430 0.98413 1.00171 1.88030 1.19598 1.25197 1.95391 1.22212 0.91762 0.86930 1.02277 1.20236 0.88600 0.84263 0.76934 1.90758 1.74314 1.26075 1.47752 1.48073 1.06774 1.05622 1.74017 1.21819 0.97483 0.82975 0.99594 1.21926 0.96542 1.00314 0.98461 1.21557 0.93733 0.96253 1.03322 1.22133 0.88061 0.95770 0.97812 0.89752 1.61876 1.04526 1.25840 1.30449 1.22647 1.04185 0.98814 0.87710 1.21923 0.95769 0.89900 1.01348 1.19692 0.87591 0.85249 0.84432 1.90477 1.72427 1.27487 1.55935 1.41871 1.07780 1.09108 1.61262 1.19692 0.81982 0.96561 1.44620 0.87909 1.25273 1.00643 0.94743 0.97351 1.69620 1.36782 0.99418 1.48365 0.85858 0.82220 0.78136 0.78055 1.20464 1.20957 1.19429 1.22582 0.78408 1.03285 1.00406 0.91889 0.92558 0.92523 0.90847 0.90909 0.93201 0.93149 0.90420 0.90289 0.90939 0.90088 0.91233 0.90212 0.90278 0.91457 0.96291 0.88450 0.91914 0.93230 0.89384 0.77442 0.91878 0.88804 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.12 -0.89 6.30 -26.73 -0.17 -1.06 16 3 C 0.06 0.44 5.94 37.16 0.22 0.67 16 4 O -0.36 -4.15 9.88 -55.14 -0.54 -4.69 16 5 C 0.05 0.43 4.76 36.01 0.17 0.60 16 6 C 0.51 6.53 7.78 -10.98 -0.09 6.44 16 7 O -0.51 -9.19 15.93 -14.35 -0.23 -9.41 16 8 N -0.61 -6.50 2.98 -172.52 -0.51 -7.02 16 9 C 0.10 0.69 6.33 -3.71 -0.02 0.67 16 10 C -0.13 -0.92 6.08 -26.61 -0.16 -1.08 16 11 C -0.11 -1.10 5.06 -26.69 -0.13 -1.23 16 12 C 0.07 0.93 2.34 -67.57 -0.16 0.77 16 13 H 0.08 1.14 7.93 -51.93 -0.41 0.73 16 14 N -0.50 -8.32 4.45 -236.16 -1.05 -9.37 16 15 C 0.01 0.22 8.43 60.06 0.51 0.73 16 16 C 0.04 0.78 5.03 -4.97 -0.03 0.76 16 17 C 0.44 10.70 7.47 -10.99 -0.08 10.62 16 18 O -0.58 -15.63 13.91 5.54 0.08 -15.55 16 19 N -0.56 -14.67 5.29 -10.96 -0.06 -14.72 16 20 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -25.13 13.05 55.50 0.72 -24.40 16 24 Si 0.93 21.42 29.55 -169.99 -5.02 16.40 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 C 0.08 0.98 5.02 -3.54 -0.02 0.96 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.48 7.94 -51.93 -0.41 0.06 16 37 H 0.08 0.50 7.69 -51.93 -0.40 0.10 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.34 5.93 -51.93 -0.31 0.03 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 0.65 6.62 -51.93 -0.34 0.30 16 44 H 0.02 0.27 6.10 -51.93 -0.32 -0.04 16 45 H 0.10 1.91 5.82 -51.93 -0.30 1.60 16 46 H 0.06 0.84 6.50 -51.93 -0.34 0.51 16 47 H 0.05 0.88 7.20 -51.93 -0.37 0.51 16 48 H 0.09 1.54 7.93 -51.93 -0.41 1.13 16 49 H 0.39 9.90 7.90 -40.82 -0.32 9.58 16 50 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 51 H 0.09 1.45 6.08 -51.93 -0.32 1.13 16 52 H 0.08 0.93 6.03 -51.93 -0.31 0.61 16 LS Contribution 406.71 15.07 6.13 6.13 Total: -1.00 -35.20 406.71 -9.05 -44.26 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -8.73 Total: 8.05 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 0.17 Total: 10.34 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.90 Total: -55.52 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.70 Total: -29.66 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.20 -9.05 -44.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713390554.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.765 kcal (2) G-P(sol) polarization free energy of solvation -35.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds