Wall clock time and date at job start Wed Apr 1 2020 00:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 O 1.42898 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.42902 * 114.00186 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47205 * 179.97438 * 5 4 3 7 7 O 1.21280 * 120.00099 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99971 * 180.02562 * 6 5 4 9 9 C 1.46921 * 120.63177 * 359.97438 * 8 6 5 10 10 C 1.53188 * 108.77941 * 126.36735 * 9 8 6 11 11 C 1.53050 * 109.31022 * 54.63667 * 10 9 8 12 12 C 1.53044 * 109.53659 * 298.63645 * 11 10 9 13 13 H 1.09004 * 109.49338 * 301.37929 * 12 11 10 14 14 N 1.46897 * 109.49511 * 181.31749 * 12 11 10 15 15 C 1.46897 * 111.00186 * 298.95144 * 14 12 11 16 16 C 1.46899 * 110.99742 * 174.99817 * 14 12 11 17 17 C 1.50697 * 109.47212 * 190.00054 * 16 14 12 18 18 O 1.21292 * 119.99769 * 359.97438 * 17 16 14 19 19 N 1.34783 * 120.00063 * 180.02562 * 17 16 14 20 20 C 1.37097 * 119.99794 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99865 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99955 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99794 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00277 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47318 * 89.99990 * 24 22 20 26 26 H 1.48495 * 109.47540 * 210.00301 * 24 22 20 27 27 H 1.48508 * 109.46999 * 330.00252 * 24 22 20 28 28 C 1.46932 * 120.62808 * 179.71941 * 8 6 5 29 29 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 30 30 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 32 32 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 33 33 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 34 34 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 35 35 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 36 36 H 1.09001 * 109.46918 * 299.99649 * 5 4 3 37 37 H 1.08999 * 109.46857 * 59.99535 * 5 4 3 38 38 H 1.09000 * 109.58745 * 246.15661 * 9 8 6 39 39 H 1.09007 * 109.58600 * 6.57818 * 9 8 6 40 40 H 1.08997 * 109.49928 * 174.58248 * 10 9 8 41 41 H 1.08997 * 109.49792 * 294.65452 * 10 9 8 42 42 H 1.08998 * 109.46013 * 58.65247 * 11 10 9 43 43 H 1.09000 * 109.45903 * 178.61316 * 11 10 9 44 44 H 1.09002 * 109.46975 * 59.99958 * 15 14 12 45 45 H 1.09003 * 109.47217 * 180.02562 * 15 14 12 46 46 H 1.09000 * 109.47002 * 300.00383 * 15 14 12 47 47 H 1.09001 * 109.47243 * 309.99709 * 16 14 12 48 48 H 1.08999 * 109.47343 * 70.00046 * 16 14 12 49 49 H 0.96994 * 119.99992 * 359.97438 * 19 17 16 50 50 H 0.96997 * 119.99947 * 180.02562 * 23 22 20 51 51 H 1.08991 * 109.58616 * 353.41667 * 28 8 6 52 52 H 1.09004 * 109.58373 * 113.84354 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0503 2.7478 -0.0001 6 6 5.5526 2.6288 -0.0001 7 8 6.0741 1.5338 -0.0001 8 7 6.3165 3.7391 0.0008 9 6 5.6994 5.0724 0.0014 10 6 6.2723 5.8805 1.1700 11 6 7.7997 5.8949 1.0747 12 6 8.3320 4.4632 1.1704 13 1 8.0116 4.0183 2.1125 14 7 9.7997 4.4808 1.1105 15 6 10.2679 5.0511 -0.1596 16 6 10.3512 3.1353 1.3185 17 6 11.8449 3.2265 1.4956 18 8 12.3959 4.3062 1.4522 19 7 12.5687 2.1082 1.7011 20 6 13.9278 2.1912 1.8616 21 1 14.4182 3.1526 1.8238 22 6 14.6739 1.0384 2.0740 23 7 14.0769 -0.1314 2.1204 24 14 16.5255 1.1515 2.2934 25 1 16.8437 1.3243 3.7336 26 1 17.1604 -0.0939 1.7923 27 1 17.0445 2.3140 1.5288 28 6 7.7824 3.6391 0.0070 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.7284 3.2893 -0.8896 37 1 3.7290 3.2882 0.8903 38 1 5.9230 5.5790 -0.9375 39 1 4.6200 4.9754 0.1186 40 1 5.8954 6.9022 1.1251 41 1 5.9704 5.4222 2.1117 42 1 8.1000 6.3309 0.1219 43 1 8.2089 6.4899 1.8912 44 1 9.9019 6.0734 -0.2558 45 1 11.3578 5.0518 -0.1778 46 1 9.8915 4.4510 -0.9881 47 1 9.9060 2.6940 2.2102 48 1 10.1253 2.5122 0.4532 49 1 12.1281 1.2448 1.7354 50 1 14.5977 -0.9361 2.2690 51 1 8.0770 2.5967 0.1279 52 1 8.1790 4.0266 -0.9315 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713390556.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:14 Heat of formation + Delta-G solvation = -107.917317 kcal Electronic energy + Delta-G solvation = -30357.916889 eV Core-core repulsion = 26164.849074 eV Total energy + Delta-G solvation = -4193.067816 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.65318 -39.05522 -38.16836 -37.48358 -35.75061 -34.06905 -33.82459 -32.65184 -31.19830 -30.49532 -28.68846 -27.77383 -26.24388 -25.50075 -24.89935 -24.09974 -22.24484 -21.96351 -20.25454 -19.21694 -19.01631 -17.79222 -17.75045 -16.91838 -16.81272 -16.37029 -15.74731 -15.56915 -15.17155 -15.05214 -14.74579 -14.68439 -14.37286 -14.29090 -13.94179 -13.74311 -13.56848 -13.26523 -13.09932 -13.05315 -12.77524 -12.50220 -12.47762 -12.35184 -12.06479 -11.61942 -11.48680 -11.37092 -11.32826 -11.29468 -11.27322 -11.13677 -10.96024 -10.82898 -10.50896 -10.35960 -10.17265 -10.08660 -9.90017 -9.43249 -9.07263 -8.37094 -7.92431 -7.75465 -6.36628 -3.77647 2.37467 2.41850 3.21182 3.29494 3.35093 3.41825 3.94095 3.97047 4.19481 4.26378 4.51558 4.52816 4.59596 4.61752 4.67950 4.71754 4.78306 4.84009 4.89066 5.01013 5.05088 5.05432 5.15750 5.19931 5.27196 5.29935 5.33377 5.47074 5.50345 5.58918 5.61928 5.70634 5.71888 5.76958 5.80581 5.82715 5.96532 6.00517 6.12453 6.13892 6.21081 6.33455 6.57385 6.68883 7.12471 7.27268 7.39212 7.59663 7.97647 8.11014 8.66725 9.22661 9.59678 10.11324 10.81045 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013588 B = 0.002138 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.099873 B =13092.283673 C =14887.524800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.060 3.940 4 O -0.364 6.364 5 C 0.048 3.952 6 C 0.513 3.487 7 O -0.514 6.514 8 N -0.608 5.608 9 C 0.104 3.896 10 C -0.134 4.134 11 C -0.112 4.112 12 C 0.072 3.928 13 H 0.085 0.915 14 N -0.504 5.504 15 C 0.014 3.986 16 C 0.042 3.958 17 C 0.445 3.555 18 O -0.579 6.579 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.076 3.924 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.097 0.903 46 H 0.018 0.982 47 H 0.088 0.912 48 H 0.050 0.950 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.095 0.905 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.948 8.331 -5.295 29.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.282 6.282 5 C -0.032 4.032 6 C 0.299 3.701 7 O -0.388 6.388 8 N -0.344 5.344 9 C -0.019 4.019 10 C -0.172 4.172 11 C -0.150 4.150 12 C -0.038 4.038 13 H 0.103 0.897 14 N -0.227 5.227 15 C -0.134 4.134 16 C -0.090 4.090 17 C 0.230 3.770 18 O -0.463 6.463 19 N -0.200 5.200 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.542 5.542 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.195 1.195 28 C -0.047 4.047 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.082 0.918 45 H 0.115 0.885 46 H 0.036 0.964 47 H 0.106 0.894 48 H 0.068 0.932 49 H 0.226 0.774 50 H 0.081 0.919 51 H 0.113 0.887 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -26.909 8.373 -4.918 28.608 hybrid contribution 0.135 -0.789 -0.490 0.939 sum -26.774 7.583 -5.408 28.348 Atomic orbital electron populations 1.21694 0.94635 1.02389 1.01927 1.21456 0.95599 0.95353 1.03841 1.22640 0.80434 0.98412 1.00167 1.88030 1.19593 1.25195 1.95389 1.22211 0.91766 0.86933 1.02273 1.20240 0.88612 0.84279 0.76939 1.90761 1.74313 1.26061 1.47708 1.48000 1.06750 1.05638 1.74036 1.21827 0.97493 0.82950 0.99581 1.21926 0.96500 1.00344 0.98479 1.21590 0.93849 0.96243 1.03328 1.22060 0.88068 0.95791 0.97877 0.89729 1.61897 1.04661 1.21218 1.34891 1.22651 1.04161 0.98386 0.88165 1.21917 0.95807 0.89717 1.01528 1.19692 0.87626 0.85180 0.84460 1.90475 1.72129 1.27740 1.55982 1.41873 1.07758 1.07579 1.62816 1.19690 0.81947 0.95179 1.46027 0.87911 1.25272 1.00645 0.94677 0.97422 1.69622 1.36806 0.98049 1.49710 0.85857 0.82168 0.77662 0.78572 1.20430 1.20976 1.19456 1.22443 0.78537 1.03400 1.00354 0.92564 0.91889 0.92520 0.90905 0.90847 0.93147 0.93212 0.90416 0.90297 0.90923 0.90046 0.90216 0.91210 0.91385 0.90262 0.91838 0.88454 0.96401 0.89367 0.93203 0.77436 0.91877 0.88659 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.15 0.37 -0.37 16 2 C -0.12 -0.90 6.30 -26.74 -0.17 -1.06 16 3 C 0.06 0.45 5.94 37.16 0.22 0.67 16 4 O -0.36 -4.15 9.88 -55.14 -0.54 -4.70 16 5 C 0.05 0.43 4.76 36.00 0.17 0.60 16 6 C 0.51 6.54 7.77 -10.99 -0.09 6.45 16 7 O -0.51 -9.19 15.91 -14.35 -0.23 -9.42 16 8 N -0.61 -6.51 2.98 -173.01 -0.52 -7.02 16 9 C 0.10 0.69 6.34 -3.72 -0.02 0.67 16 10 C -0.13 -0.92 6.08 -26.61 -0.16 -1.08 16 11 C -0.11 -1.11 4.92 -26.68 -0.13 -1.24 16 12 C 0.07 0.93 2.36 -67.79 -0.16 0.77 16 13 H 0.08 1.15 8.03 -51.93 -0.42 0.73 16 14 N -0.50 -8.33 4.49 -236.43 -1.06 -9.39 16 15 C 0.01 0.22 8.46 60.06 0.51 0.73 16 16 C 0.04 0.78 4.89 -4.98 -0.02 0.75 16 17 C 0.45 10.72 7.47 -10.98 -0.08 10.64 16 18 O -0.58 -15.64 13.91 5.55 0.08 -15.56 16 19 N -0.56 -14.69 5.29 -10.96 -0.06 -14.74 16 20 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 21 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -25.16 13.05 55.50 0.72 -24.43 16 24 Si 0.93 21.45 29.55 -169.99 -5.02 16.42 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 28 C 0.08 0.98 5.01 -3.91 -0.02 0.96 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.48 7.94 -51.93 -0.41 0.06 16 37 H 0.08 0.50 7.69 -51.93 -0.40 0.10 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.34 5.93 -51.93 -0.31 0.03 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.65 6.50 -51.93 -0.34 0.31 16 43 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.06 0.85 6.36 -51.93 -0.33 0.52 16 45 H 0.10 1.91 5.82 -51.93 -0.30 1.60 16 46 H 0.02 0.26 6.17 -51.93 -0.32 -0.06 16 47 H 0.09 1.56 8.00 -51.93 -0.42 1.14 16 48 H 0.05 0.89 7.08 -51.93 -0.37 0.52 16 49 H 0.39 9.92 7.90 -40.82 -0.32 9.60 16 50 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 51 H 0.10 1.48 5.92 -51.93 -0.31 1.17 16 52 H 0.07 0.91 6.11 -51.93 -0.32 0.59 16 LS Contribution 406.28 15.07 6.12 6.12 Total: -1.00 -35.23 406.28 -9.05 -44.29 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -8.72 Total: 8.11 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 0.17 Total: 10.34 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.91 Total: -55.60 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.70 Total: -29.68 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.23 -9.05 -44.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713390556.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.631 kcal (2) G-P(sol) polarization free energy of solvation -35.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds