Wall clock time and date at job start Wed Apr 1 2020 00:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 O 1.42898 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.42902 * 114.00186 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47205 * 179.97438 * 5 4 3 7 7 O 1.21280 * 120.00099 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99971 * 180.02562 * 6 5 4 9 9 C 1.46921 * 120.63177 * 359.97438 * 8 6 5 10 10 C 1.53188 * 108.77941 * 126.36735 * 9 8 6 11 11 C 1.53050 * 109.31022 * 54.63667 * 10 9 8 12 12 C 1.53044 * 109.53659 * 298.63645 * 11 10 9 13 13 H 1.09004 * 109.49338 * 301.37929 * 12 11 10 14 14 N 1.46897 * 109.49511 * 181.31749 * 12 11 10 15 15 C 1.46897 * 111.00186 * 298.95144 * 14 12 11 16 16 C 1.46899 * 110.99742 * 174.99817 * 14 12 11 17 17 C 1.50697 * 109.47212 * 190.00054 * 16 14 12 18 18 O 1.21292 * 119.99769 * 359.97438 * 17 16 14 19 19 N 1.34783 * 120.00063 * 180.02562 * 17 16 14 20 20 C 1.37097 * 119.99794 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99865 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99955 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99794 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00277 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47318 * 89.99990 * 24 22 20 26 26 H 1.48495 * 109.47540 * 210.00301 * 24 22 20 27 27 H 1.48508 * 109.46999 * 330.00252 * 24 22 20 28 28 C 1.46932 * 120.62808 * 179.71941 * 8 6 5 29 29 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 30 30 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 32 32 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 33 33 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 34 34 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 35 35 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 36 36 H 1.09001 * 109.46918 * 299.99649 * 5 4 3 37 37 H 1.08999 * 109.46857 * 59.99535 * 5 4 3 38 38 H 1.09000 * 109.58745 * 246.15661 * 9 8 6 39 39 H 1.09007 * 109.58600 * 6.57818 * 9 8 6 40 40 H 1.08997 * 109.49928 * 174.58248 * 10 9 8 41 41 H 1.08997 * 109.49792 * 294.65452 * 10 9 8 42 42 H 1.08998 * 109.46013 * 58.65247 * 11 10 9 43 43 H 1.09000 * 109.45903 * 178.61316 * 11 10 9 44 44 H 1.09002 * 109.46975 * 59.99958 * 15 14 12 45 45 H 1.09003 * 109.47217 * 180.02562 * 15 14 12 46 46 H 1.09000 * 109.47002 * 300.00383 * 15 14 12 47 47 H 1.09001 * 109.47243 * 309.99709 * 16 14 12 48 48 H 1.08999 * 109.47343 * 70.00046 * 16 14 12 49 49 H 0.96994 * 119.99992 * 359.97438 * 19 17 16 50 50 H 0.96997 * 119.99947 * 180.02562 * 23 22 20 51 51 H 1.08991 * 109.58616 * 353.41667 * 28 8 6 52 52 H 1.09004 * 109.58373 * 113.84354 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0503 2.7478 -0.0001 6 6 5.5526 2.6288 -0.0001 7 8 6.0741 1.5338 -0.0001 8 7 6.3165 3.7391 0.0008 9 6 5.6994 5.0724 0.0014 10 6 6.2723 5.8805 1.1700 11 6 7.7997 5.8949 1.0747 12 6 8.3320 4.4632 1.1704 13 1 8.0116 4.0183 2.1125 14 7 9.7997 4.4808 1.1105 15 6 10.2679 5.0511 -0.1596 16 6 10.3512 3.1353 1.3185 17 6 11.8449 3.2265 1.4956 18 8 12.3959 4.3062 1.4522 19 7 12.5687 2.1082 1.7011 20 6 13.9278 2.1912 1.8616 21 1 14.4182 3.1526 1.8238 22 6 14.6739 1.0384 2.0740 23 7 14.0769 -0.1314 2.1204 24 14 16.5255 1.1515 2.2934 25 1 16.8437 1.3243 3.7336 26 1 17.1604 -0.0939 1.7923 27 1 17.0445 2.3140 1.5288 28 6 7.7824 3.6391 0.0070 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.7284 3.2893 -0.8896 37 1 3.7290 3.2882 0.8903 38 1 5.9230 5.5790 -0.9375 39 1 4.6200 4.9754 0.1186 40 1 5.8954 6.9022 1.1251 41 1 5.9704 5.4222 2.1117 42 1 8.1000 6.3309 0.1219 43 1 8.2089 6.4899 1.8912 44 1 9.9019 6.0734 -0.2558 45 1 11.3578 5.0518 -0.1778 46 1 9.8915 4.4510 -0.9881 47 1 9.9060 2.6940 2.2102 48 1 10.1253 2.5122 0.4532 49 1 12.1281 1.2448 1.7354 50 1 14.5977 -0.9361 2.2690 51 1 8.0770 2.5967 0.1279 52 1 8.1790 4.0266 -0.9315 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713390556.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:13 Heat of formation + Delta-G solvation = -133.780555 kcal Electronic energy + Delta-G solvation = -30359.038403 eV Core-core repulsion = 26164.849074 eV Total energy + Delta-G solvation = -4194.189330 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.60163 -40.45057 -39.38074 -38.53042 -36.93093 -35.86511 -34.59433 -33.54304 -33.27545 -31.46454 -29.71659 -29.03113 -27.07257 -26.83944 -25.84012 -25.49897 -23.18550 -22.48800 -21.29091 -20.93946 -20.02133 -19.84027 -18.59333 -17.87886 -17.62006 -17.50875 -16.85914 -16.61906 -16.56756 -16.35349 -16.16284 -15.79079 -15.42349 -15.32605 -15.28009 -14.90250 -14.65478 -14.38037 -14.20037 -14.00160 -13.88863 -13.57782 -13.37898 -13.08126 -13.05033 -13.01753 -12.87950 -12.66809 -12.63020 -12.42934 -12.32330 -12.12750 -11.90786 -11.83340 -11.79603 -11.76896 -11.50631 -11.41632 -10.85971 -10.68195 -10.34186 -10.03212 -9.96007 -9.08824 -8.47408 -5.97054 1.37057 1.40106 1.48132 1.53757 1.62533 2.01771 2.26839 2.67622 2.84822 3.18436 3.36100 3.47304 3.75024 3.86280 3.93762 4.03364 4.04440 4.08013 4.14995 4.18946 4.23637 4.24947 4.27551 4.41923 4.43794 4.49703 4.53261 4.56463 4.57268 4.64405 4.65633 4.77791 4.84249 4.84824 4.89661 5.09664 5.16603 5.17082 5.23124 5.29664 5.33050 5.36946 5.39669 5.42446 5.84329 6.02357 6.08198 6.17647 6.35685 6.57788 7.08339 7.10557 7.53342 8.08333 8.70179 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013588 B = 0.002138 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.099873 B =13092.283673 C =14887.524800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.057 3.943 4 O -0.406 6.406 5 C 0.052 3.948 6 C 0.502 3.498 7 O -0.582 6.582 8 N -0.602 5.602 9 C 0.097 3.903 10 C -0.126 4.126 11 C -0.109 4.109 12 C 0.077 3.923 13 H 0.074 0.926 14 N -0.519 5.519 15 C 0.021 3.979 16 C 0.056 3.944 17 C 0.444 3.556 18 O -0.609 6.609 19 N -0.576 5.576 20 C -0.332 4.332 21 H 0.082 0.918 22 C -0.017 4.017 23 N -0.923 5.923 24 Si 0.997 3.003 25 H -0.270 1.270 26 H -0.272 1.272 27 H -0.270 1.270 28 C 0.082 3.918 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.056 0.944 46 H 0.030 0.970 47 H 0.097 0.903 48 H 0.058 0.942 49 H 0.393 0.607 50 H 0.277 0.723 51 H 0.060 0.940 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.536 10.388 -5.628 32.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C -0.019 4.019 4 O -0.326 6.326 5 C -0.027 4.027 6 C 0.291 3.709 7 O -0.461 6.461 8 N -0.337 5.337 9 C -0.024 4.024 10 C -0.164 4.164 11 C -0.147 4.147 12 C -0.032 4.032 13 H 0.092 0.908 14 N -0.242 5.242 15 C -0.127 4.127 16 C -0.076 4.076 17 C 0.231 3.769 18 O -0.495 6.495 19 N -0.213 5.213 20 C -0.462 4.462 21 H 0.100 0.900 22 C -0.216 4.216 23 N -0.564 5.564 24 Si 0.820 3.180 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.195 1.195 28 C -0.043 4.043 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.110 0.890 45 H 0.074 0.926 46 H 0.048 0.952 47 H 0.116 0.884 48 H 0.076 0.924 49 H 0.227 0.773 50 H 0.087 0.913 51 H 0.079 0.921 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -29.548 10.478 -5.253 31.788 hybrid contribution 0.885 -1.375 -0.396 1.682 sum -28.663 9.103 -5.649 30.600 Atomic orbital electron populations 1.21658 0.92730 1.02814 1.02854 1.21503 0.97232 0.95563 1.02388 1.22826 0.78625 0.98492 1.01949 1.87990 1.21775 1.27022 1.95793 1.22366 0.88376 0.86646 1.05324 1.21140 0.90572 0.83604 0.75554 1.90730 1.75743 1.28657 1.50965 1.48120 1.05646 1.07168 1.72743 1.22231 0.99280 0.80470 1.00371 1.21919 0.93758 1.02286 0.98464 1.21605 0.96274 0.93370 1.03437 1.22104 0.85508 0.98204 0.97380 0.90751 1.61890 1.07192 1.19554 1.35542 1.22534 1.01557 1.00242 0.88332 1.21716 0.91860 0.91686 1.02307 1.20597 0.89714 0.84123 0.82435 1.90449 1.73501 1.28767 1.56792 1.41971 1.07440 1.08186 1.63674 1.19698 0.83291 0.94922 1.48262 0.89955 1.26127 1.05142 0.93977 0.96372 1.69700 1.38531 0.98581 1.49610 0.84870 0.76425 0.77923 0.78748 1.19560 1.19635 1.19504 1.22176 0.80546 1.01222 1.00321 0.91539 0.91805 0.91600 0.92342 0.92433 0.91314 0.91222 0.86925 0.87047 0.89163 0.86506 0.86964 0.91460 0.90608 0.91008 0.89047 0.92561 0.95192 0.88439 0.92433 0.77316 0.91332 0.92139 0.90468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.91 71.98 0.71 -0.47 16 2 C -0.13 -1.78 6.30 30.59 0.19 -1.59 16 3 C 0.06 0.72 5.94 71.98 0.43 1.15 16 4 O -0.41 -8.80 9.88 -129.94 -1.28 -10.08 16 5 C 0.05 0.77 4.76 71.24 0.34 1.10 16 6 C 0.50 12.34 7.77 87.66 0.68 13.03 16 7 O -0.58 -21.66 15.91 16.01 0.25 -21.41 16 8 N -0.60 -11.75 2.98 -819.67 -2.44 -14.19 16 9 C 0.10 0.86 6.34 86.36 0.55 1.40 16 10 C -0.13 -1.20 6.08 30.67 0.19 -1.01 16 11 C -0.11 -1.87 4.92 30.63 0.15 -1.72 16 12 C 0.08 1.93 2.36 44.86 0.11 2.04 16 13 H 0.07 2.01 8.03 -2.38 -0.02 1.99 16 14 N -0.52 -17.27 4.49 -901.93 -4.05 -21.32 16 15 C 0.02 0.66 8.46 127.69 1.08 1.74 16 16 C 0.06 2.15 4.89 85.56 0.42 2.57 16 17 C 0.44 22.31 7.47 87.66 0.66 22.96 16 18 O -0.61 -34.30 13.91 -3.07 -0.04 -34.34 16 19 N -0.58 -31.30 5.29 -306.98 -1.62 -32.92 16 20 C -0.33 -19.54 9.68 84.04 0.81 -18.73 16 21 H 0.08 5.09 7.16 -2.91 -0.02 5.07 16 22 C -0.02 -0.93 5.50 84.93 0.47 -0.47 16 23 N -0.92 -52.22 13.05 21.66 0.28 -51.94 16 24 Si 1.00 44.32 29.55 68.60 2.03 46.35 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 27 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 28 C 0.08 2.07 5.01 86.23 0.43 2.50 16 29 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.11 0.86 7.94 -2.39 -0.02 0.84 16 37 H 0.11 0.90 7.69 -2.39 -0.02 0.88 16 38 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.12 0.27 5.93 -2.38 -0.01 0.25 16 40 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.08 1.20 6.50 -2.39 -0.02 1.18 16 43 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.09 2.33 6.36 -2.39 -0.02 2.31 16 45 H 0.06 2.27 5.82 -2.39 -0.01 2.26 16 46 H 0.03 0.86 6.17 -2.39 -0.01 0.84 16 47 H 0.10 3.57 8.00 -2.39 -0.02 3.55 16 48 H 0.06 2.14 7.08 -2.39 -0.02 2.13 16 49 H 0.39 20.81 7.90 -92.71 -0.73 20.08 16 50 H 0.28 14.67 8.31 -92.71 -0.77 13.90 16 51 H 0.06 1.97 5.92 -2.39 -0.01 1.95 16 52 H 0.08 1.86 6.11 -2.39 -0.01 1.85 16 Total: -1.00 -82.33 406.28 0.53 -81.80 By element: Atomic # 1 Polarization: 33.34 SS G_CDS: 0.19 Total: 33.53 kcal Atomic # 6 Polarization: 17.30 SS G_CDS: 7.21 Total: 24.52 kcal Atomic # 7 Polarization: -112.54 SS G_CDS: -7.83 Total: -120.37 kcal Atomic # 8 Polarization: -64.75 SS G_CDS: -1.07 Total: -65.83 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -82.33 0.53 -81.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713390556.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.979 kcal (2) G-P(sol) polarization free energy of solvation -82.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds