Wall clock time and date at job start Wed Apr 1 2020 00:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47105 * 2 1 4 4 O 1.42897 * 109.47105 * 120.00029 * 2 1 3 5 5 C 1.42904 * 113.99853 * 149.99732 * 4 2 1 6 6 C 1.50696 * 109.46736 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00520 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99819 * 180.02562 * 6 5 4 9 9 C 1.46929 * 120.62687 * 0.02562 * 8 6 5 10 10 C 1.53196 * 108.77486 * 126.36877 * 9 8 6 11 11 C 1.53037 * 109.31315 * 54.63188 * 10 9 8 12 12 C 1.53043 * 109.53875 * 298.63222 * 11 10 9 13 13 H 1.08996 * 109.49559 * 301.38543 * 12 11 10 14 14 N 1.46905 * 109.49625 * 181.31500 * 12 11 10 15 15 C 1.46901 * 111.00264 * 298.95351 * 14 12 11 16 16 C 1.46894 * 110.99725 * 175.00165 * 14 12 11 17 17 C 1.50697 * 109.47243 * 190.00244 * 16 14 12 18 18 O 1.21286 * 120.00114 * 359.97438 * 17 16 14 19 19 N 1.34779 * 120.00028 * 180.02562 * 17 16 14 20 20 C 1.37094 * 119.99859 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00345 * 359.97438 * 20 19 17 22 22 C 1.38956 * 120.00346 * 179.97438 * 20 19 17 23 23 N 1.31401 * 120.00342 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99586 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.47213 * 90.00123 * 24 22 20 26 26 H 1.48498 * 109.46975 * 210.00235 * 24 22 20 27 27 H 1.48502 * 109.47060 * 330.00137 * 24 22 20 28 28 C 1.46918 * 120.63391 * 179.97438 * 8 6 5 29 29 H 1.09001 * 109.47434 * 300.00028 * 1 2 3 30 30 H 1.09005 * 109.47361 * 59.99949 * 1 2 3 31 31 H 1.08996 * 109.47332 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46840 * 240.00420 * 2 1 3 33 33 H 1.09003 * 109.47075 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47588 * 300.00367 * 3 2 1 35 35 H 1.08997 * 109.46607 * 60.00033 * 3 2 1 36 36 H 1.09005 * 109.46801 * 60.00392 * 5 4 2 37 37 H 1.09001 * 109.47398 * 300.00524 * 5 4 2 38 38 H 1.08998 * 109.59209 * 6.57692 * 9 8 6 39 39 H 1.09003 * 109.58217 * 246.14973 * 9 8 6 40 40 H 1.08998 * 109.49640 * 174.58442 * 10 9 8 41 41 H 1.08994 * 109.49723 * 294.64754 * 10 9 8 42 42 H 1.09004 * 109.46115 * 58.65830 * 11 10 9 43 43 H 1.08996 * 109.46349 * 178.61401 * 11 10 9 44 44 H 1.09000 * 109.46471 * 60.00008 * 15 14 12 45 45 H 1.08990 * 109.46977 * 179.97438 * 15 14 12 46 46 H 1.09000 * 109.47439 * 300.00585 * 15 14 12 47 47 H 1.09007 * 109.47732 * 310.00668 * 16 14 12 48 48 H 1.09008 * 109.47376 * 70.00020 * 16 14 12 49 49 H 0.96999 * 120.00206 * 0.02562 * 19 17 16 50 50 H 0.97007 * 120.00193 * 180.02562 * 23 22 20 51 51 H 1.09008 * 109.58859 * 113.84030 * 28 8 6 52 52 H 1.09000 * 109.70348 * 353.49425 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 3.2659 -1.3245 0.9885 6 6 3.6692 -1.9989 2.2745 7 8 2.9487 -1.9294 3.2476 8 7 4.8306 -2.6793 2.3432 9 6 5.7143 -2.7718 1.1729 10 6 7.1159 -2.3022 1.5751 11 6 7.5912 -3.1072 2.7868 12 6 6.6445 -2.8658 3.9648 13 1 6.6187 -1.8016 4.1987 14 7 7.1191 -3.6141 5.1365 15 6 7.1416 -5.0578 4.8656 16 6 6.3021 -3.3133 6.3196 17 6 6.9572 -3.8977 7.5444 18 8 8.0018 -4.5055 7.4418 19 7 6.3819 -3.7459 8.7537 20 6 6.9782 -4.2771 9.8681 21 1 7.9087 -4.8176 9.7768 22 6 6.3854 -4.1201 11.1150 23 7 6.9572 -4.6289 12.1831 24 14 4.7762 -3.1847 11.2729 25 1 3.6388 -4.1280 11.1267 26 1 4.7111 -2.5335 12.6059 27 1 4.6997 -2.1487 10.2117 28 6 5.2377 -3.3415 3.5899 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 4.0199 -0.5874 0.7124 37 1 3.1809 -2.0707 0.1985 38 1 5.3311 -2.1365 0.3744 39 1 5.7596 -3.8056 0.8302 40 1 7.8037 -2.4562 0.7436 41 1 7.0854 -1.2431 1.8306 42 1 7.5980 -4.1684 2.5378 43 1 8.5982 -2.7921 3.0599 44 1 7.8092 -5.2597 4.0279 45 1 7.4973 -5.5877 5.7491 46 1 6.1357 -5.3968 4.6184 47 1 6.2138 -2.2329 6.4352 48 1 5.3099 -3.7475 6.1960 49 1 5.5459 -3.2607 8.8357 50 1 6.5431 -4.5196 13.0535 51 1 5.2440 -4.4218 3.4446 52 1 4.5405 -3.0842 4.3872 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713390657.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:20 Heat of formation + Delta-G solvation = -126.162037 kcal Electronic energy + Delta-G solvation = -30757.352510 eV Core-core repulsion = 26563.493544 eV Total energy + Delta-G solvation = -4193.858966 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.59848 -40.55361 -39.51005 -38.69058 -36.94365 -35.91176 -33.80517 -33.75160 -33.45953 -31.38996 -29.69146 -28.81749 -28.04740 -27.04803 -25.97594 -25.47694 -23.13531 -22.26081 -21.33810 -21.20855 -20.20577 -19.98962 -18.49562 -17.96965 -17.74446 -17.12252 -16.91714 -16.79002 -16.54216 -16.28397 -15.78007 -15.73063 -15.42525 -15.25514 -15.06306 -14.79042 -14.45432 -14.39019 -14.38093 -14.03524 -13.91494 -13.75413 -13.48082 -13.40807 -13.13630 -13.05869 -12.88610 -12.68456 -12.64694 -12.43554 -12.36748 -12.31658 -12.01531 -11.88620 -11.79124 -11.63285 -11.52423 -11.42402 -10.84015 -10.63978 -10.42282 -10.25540 -9.96665 -9.08447 -8.43673 -6.03475 1.28167 1.31407 1.40040 1.49627 1.64161 1.91527 2.19276 2.54635 2.84670 3.12103 3.20025 3.48030 3.75063 3.84613 3.93056 4.01427 4.03350 4.09180 4.10800 4.15716 4.16905 4.26951 4.27732 4.31179 4.36407 4.49593 4.51754 4.56379 4.64125 4.75464 4.76913 4.81867 4.85043 4.90727 4.92508 4.94675 5.10831 5.16815 5.29818 5.29991 5.33912 5.35569 5.42645 5.50972 5.86393 5.96569 6.12436 6.17399 6.37814 6.57033 6.85829 7.09516 7.36995 7.93008 8.73673 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012407 B = 0.002477 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.232490 B =11299.343209 C =13143.722542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.073 3.927 3 C -0.175 4.175 4 O -0.397 6.397 5 C 0.050 3.950 6 C 0.504 3.496 7 O -0.580 6.580 8 N -0.602 5.602 9 C 0.098 3.902 10 C -0.126 4.126 11 C -0.110 4.110 12 C 0.078 3.922 13 H 0.078 0.922 14 N -0.522 5.522 15 C 0.020 3.980 16 C 0.051 3.949 17 C 0.455 3.545 18 O -0.599 6.599 19 N -0.594 5.594 20 C -0.324 4.324 21 H 0.060 0.940 22 C -0.012 4.012 23 N -0.931 5.931 24 Si 0.958 3.042 25 H -0.259 1.259 26 H -0.271 1.271 27 H -0.238 1.238 28 C 0.081 3.919 29 H 0.047 0.953 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.053 0.947 46 H 0.034 0.966 47 H 0.108 0.892 48 H 0.069 0.931 49 H 0.387 0.613 50 H 0.279 0.721 51 H 0.077 0.923 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.884 10.628 -35.315 38.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.016 3.984 3 C -0.232 4.232 4 O -0.317 6.317 5 C -0.029 4.029 6 C 0.293 3.707 7 O -0.459 6.459 8 N -0.337 5.337 9 C -0.023 4.023 10 C -0.164 4.164 11 C -0.148 4.148 12 C -0.031 4.031 13 H 0.096 0.904 14 N -0.245 5.245 15 C -0.128 4.128 16 C -0.080 4.080 17 C 0.242 3.758 18 O -0.483 6.483 19 N -0.236 5.236 20 C -0.453 4.453 21 H 0.078 0.922 22 C -0.211 4.211 23 N -0.572 5.572 24 Si 0.779 3.221 25 H -0.183 1.183 26 H -0.196 1.196 27 H -0.162 1.162 28 C -0.044 4.044 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.107 0.893 40 H 0.128 0.872 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.108 0.892 45 H 0.072 0.928 46 H 0.052 0.948 47 H 0.126 0.874 48 H 0.087 0.913 49 H 0.222 0.778 50 H 0.089 0.911 51 H 0.095 0.905 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.165 10.367 -34.387 37.067 hybrid contribution -1.298 -0.102 1.111 1.711 sum -10.463 10.266 -33.276 36.362 Atomic orbital electron populations 1.21903 0.93420 1.02591 1.02977 1.22411 0.95415 0.92955 0.87593 1.22313 1.01873 0.96157 1.02880 1.88056 1.35703 1.70381 1.37558 1.22407 0.88247 0.98162 0.94098 1.21087 0.80690 0.78409 0.90497 1.90719 1.53362 1.61793 1.39989 1.48110 1.20162 1.51991 1.13424 1.22210 0.89658 1.04022 0.86423 1.21909 0.96219 1.00043 0.98238 1.21604 0.98583 1.01550 0.93068 1.22170 0.92314 0.98080 0.90523 0.90355 1.61863 1.51519 1.08874 1.02263 1.22537 1.00217 0.87344 1.02701 1.21818 0.95053 1.02147 0.88987 1.20699 0.86466 0.83843 0.84752 1.90504 1.25726 1.45881 1.86182 1.42086 1.23647 1.51448 1.06411 1.18999 1.07643 1.33181 0.85515 0.92186 1.26014 1.02769 0.98372 0.93930 1.69783 1.41625 1.46102 0.99672 0.85451 0.77739 0.79386 0.79538 1.18310 1.19631 1.16213 1.22266 0.97123 0.97640 0.87340 0.93337 0.88745 0.92533 0.89369 0.91853 0.89504 0.93489 0.87446 0.87083 0.86643 0.89260 0.87200 0.91403 0.90731 0.91155 0.89246 0.92783 0.94766 0.87395 0.91340 0.77828 0.91114 0.90457 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.56 71.98 0.69 -1.03 16 2 C 0.07 0.83 3.34 30.59 0.10 0.93 16 3 C -0.17 -1.66 9.53 71.98 0.69 -0.98 16 4 O -0.40 -7.85 9.52 -129.94 -1.24 -9.09 16 5 C 0.05 0.66 4.57 71.23 0.33 0.99 16 6 C 0.50 11.26 7.78 87.65 0.68 11.94 16 7 O -0.58 -19.88 15.92 16.01 0.25 -19.63 16 8 N -0.60 -10.48 2.97 -818.96 -2.43 -12.91 16 9 C 0.10 0.73 6.34 86.36 0.55 1.28 16 10 C -0.13 -1.05 6.08 30.67 0.19 -0.86 16 11 C -0.11 -1.74 4.92 30.62 0.15 -1.59 16 12 C 0.08 1.77 2.37 44.98 0.11 1.87 16 13 H 0.08 1.89 8.03 -2.39 -0.02 1.87 16 14 N -0.52 -16.14 4.49 -901.22 -4.05 -20.19 16 15 C 0.02 0.59 8.46 127.69 1.08 1.67 16 16 C 0.05 1.78 4.90 85.56 0.42 2.20 16 17 C 0.45 21.60 7.48 87.66 0.66 22.26 16 18 O -0.60 -33.59 13.91 -3.05 -0.04 -33.63 16 19 N -0.59 -29.67 5.09 -306.99 -1.56 -31.24 16 20 C -0.32 -19.55 10.16 84.04 0.85 -18.69 16 21 H 0.06 4.25 7.39 -2.91 -0.02 4.23 16 22 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 23 N -0.93 -57.29 13.96 21.66 0.30 -56.99 16 24 Si 0.96 41.18 27.74 68.60 1.90 43.08 16 25 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 27 H -0.24 -9.01 6.52 99.48 0.65 -8.37 16 28 C 0.08 1.82 5.02 86.35 0.43 2.25 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.09 0.50 7.79 -2.39 -0.02 0.49 16 33 H 0.06 0.51 7.87 -2.39 -0.02 0.49 16 34 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.11 0.77 7.42 -2.38 -0.02 0.75 16 37 H 0.11 0.71 7.89 -2.39 -0.02 0.69 16 38 H 0.12 0.14 5.93 -2.39 -0.01 0.13 16 39 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.07 1.10 6.50 -2.39 -0.02 1.08 16 43 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.09 2.19 6.36 -2.39 -0.02 2.18 16 45 H 0.05 2.12 5.82 -2.39 -0.01 2.11 16 46 H 0.03 0.90 6.17 -2.39 -0.01 0.89 16 47 H 0.11 3.36 8.00 -2.38 -0.02 3.35 16 48 H 0.07 2.17 7.07 -2.38 -0.02 2.15 16 49 H 0.39 16.60 5.76 -92.71 -0.53 16.07 16 50 H 0.28 15.72 8.31 -92.70 -0.77 14.95 16 51 H 0.08 1.66 6.12 -2.38 -0.01 1.65 16 52 H 0.07 1.88 5.92 -2.39 -0.01 1.86 16 Total: -1.00 -87.84 401.96 0.85 -86.99 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: 0.33 Total: 31.59 kcal Atomic # 6 Polarization: 14.63 SS G_CDS: 7.38 Total: 22.02 kcal Atomic # 7 Polarization: -113.59 SS G_CDS: -7.74 Total: -121.33 kcal Atomic # 8 Polarization: -61.33 SS G_CDS: -1.02 Total: -62.35 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 1.90 Total: 43.08 kcal Total: -87.84 0.85 -86.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713390657.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.174 kcal (2) G-P(sol) polarization free energy of solvation -87.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds