Wall clock time and date at job start Wed Apr 1 2020 00:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.41729 * 2 1 4 4 C 1.54487 * 110.37340 * 237.69003 * 2 1 3 5 5 C 1.54505 * 104.06179 * 217.18979 * 4 2 1 6 6 C 1.54472 * 104.06681 * 0.02562 * 5 4 2 7 7 H 1.09004 * 110.37299 * 265.14702 * 6 5 4 8 8 C 1.52998 * 110.37541 * 142.92132 * 6 5 4 9 9 C 1.53001 * 109.47152 * 175.00108 * 8 6 5 10 10 C 1.50702 * 109.47002 * 180.02562 * 9 8 6 11 11 O 1.21282 * 119.99778 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99946 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00143 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47560 * 179.97438 * 13 12 10 15 15 N 1.46895 * 109.47285 * 180.02562 * 14 13 12 16 16 C 1.46902 * 110.99772 * 66.05442 * 15 14 13 17 17 C 1.46907 * 110.99990 * 190.00192 * 15 14 13 18 18 C 1.50698 * 109.47121 * 170.00075 * 17 15 14 19 19 O 1.21290 * 119.99998 * 0.02562 * 18 17 15 20 20 N 1.34773 * 120.00006 * 180.02562 * 18 17 15 21 21 C 1.37098 * 119.99977 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00456 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99998 * 180.02562 * 21 20 18 24 24 N 1.31415 * 120.00034 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99992 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47031 * 89.99969 * 25 23 21 27 27 H 1.48499 * 109.46906 * 209.99807 * 25 23 21 28 28 H 1.48500 * 109.46986 * 329.99866 * 25 23 21 29 29 O 1.44421 * 110.37396 * 122.31316 * 2 1 3 30 30 H 1.09010 * 109.46831 * 182.30651 * 1 2 3 31 31 H 1.08996 * 109.46987 * 302.30547 * 1 2 3 32 32 H 1.08996 * 109.46862 * 62.31233 * 1 2 3 33 33 H 1.09003 * 110.50578 * 335.83854 * 4 2 1 34 34 H 1.09000 * 110.50989 * 98.54420 * 4 2 1 35 35 H 1.09003 * 110.50916 * 118.64999 * 5 4 2 36 36 H 1.08997 * 110.51173 * 241.35111 * 5 4 2 37 37 H 1.09000 * 109.47136 * 294.99877 * 8 6 5 38 38 H 1.08999 * 109.47367 * 54.99807 * 8 6 5 39 39 H 1.09000 * 109.46911 * 299.99907 * 9 8 6 40 40 H 1.08995 * 109.47537 * 60.00007 * 9 8 6 41 41 H 0.97002 * 120.00433 * 359.97438 * 12 10 9 42 42 H 1.09001 * 109.47429 * 300.00636 * 13 12 10 43 43 H 1.09012 * 109.46701 * 60.00061 * 13 12 10 44 44 H 1.09000 * 109.47195 * 300.00702 * 14 13 12 45 45 H 1.09005 * 109.46337 * 60.00582 * 14 13 12 46 46 H 1.09000 * 109.47459 * 59.99648 * 16 15 14 47 47 H 1.09002 * 109.47255 * 179.97438 * 16 15 14 48 48 H 1.09005 * 109.46922 * 299.99655 * 16 15 14 49 49 H 1.08996 * 109.47251 * 290.00258 * 17 15 14 50 50 H 1.08994 * 109.46728 * 50.00609 * 17 15 14 51 51 H 0.97003 * 120.00220 * 0.02562 * 20 18 17 52 52 H 0.96998 * 119.99663 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0678 -0.7741 -1.2240 5 6 3.3178 -1.5057 -0.6859 6 6 3.3870 -1.0877 0.7996 7 1 4.0520 -0.2328 0.9227 8 6 3.8624 -2.2593 1.6610 9 6 4.0429 -1.7897 3.1059 10 6 4.5118 -2.9436 3.9543 11 8 4.6842 -4.0343 3.4527 12 7 4.7387 -2.7638 5.2706 13 6 5.1939 -3.8856 6.0954 14 6 5.3746 -3.4161 7.5403 15 7 5.8317 -4.5409 8.3672 16 6 7.1781 -4.9735 7.9696 17 6 5.7897 -4.1961 9.7947 18 6 6.0256 -5.4360 10.6181 19 8 6.2109 -6.5019 10.0698 20 7 6.0305 -5.3605 11.9637 21 6 6.2456 -6.4884 12.7127 22 1 6.4107 -7.4375 12.2246 23 6 6.2503 -6.4106 14.1000 24 7 6.0489 -5.2558 14.6941 25 14 6.5426 -7.9476 15.1207 26 1 7.9976 -8.1052 15.3726 27 1 5.8265 -7.8254 16.4159 28 1 6.0362 -9.1341 14.3851 29 8 2.0328 -0.7237 1.1442 30 1 -0.3633 -1.0269 0.0414 31 1 -0.3633 0.5492 0.8686 32 1 -0.3633 0.4775 -0.9100 33 1 1.3275 -1.4919 -1.5772 34 1 2.3430 -0.0839 -2.0216 35 1 3.1955 -2.5853 -0.7733 36 1 4.2109 -1.1773 -1.2175 37 1 3.1217 -3.0583 1.6285 38 1 4.8133 -2.6297 1.2779 39 1 4.7837 -0.9908 3.1384 40 1 3.0921 -1.4194 3.4892 41 1 4.6005 -1.8916 5.6719 42 1 4.4535 -4.6849 6.0626 43 1 6.1451 -4.2557 5.7124 44 1 6.1153 -2.6171 7.5728 45 1 4.4236 -3.0459 7.9235 46 1 7.8762 -4.1451 8.0896 47 1 7.4923 -5.8069 8.5980 48 1 7.1649 -5.2893 6.9264 49 1 6.5645 -3.4615 10.0140 50 1 4.8131 -3.7782 10.0388 51 1 5.8820 -4.5081 12.4022 52 1 6.0525 -5.2015 15.6626 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713476541.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:47 Heat of formation + Delta-G solvation = -127.274869 kcal Electronic energy + Delta-G solvation = -28654.428308 eV Core-core repulsion = 24460.521085 eV Total energy + Delta-G solvation = -4193.907222 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.24682 -39.64694 -38.63457 -36.80885 -34.67813 -34.25253 -33.79285 -32.66405 -31.27847 -31.19461 -29.51590 -27.73786 -26.86185 -25.24864 -24.03674 -23.09120 -21.76073 -21.23053 -21.20951 -20.33444 -19.16005 -17.84464 -17.31165 -16.92385 -16.53311 -16.24291 -16.01756 -15.82636 -15.31892 -15.19156 -14.70156 -14.60624 -14.24800 -14.20457 -13.78871 -13.72886 -13.49849 -13.41944 -13.20297 -12.98151 -12.77669 -12.60541 -12.12240 -12.11048 -12.01466 -11.83482 -11.52962 -11.50848 -11.38081 -11.28561 -11.25817 -11.18182 -11.05146 -11.02712 -10.93397 -10.38045 -10.21098 -10.14711 -9.97986 -9.47109 -9.16134 -8.47064 -7.98042 -7.88058 -6.41095 -3.81748 2.52375 2.93738 3.18624 3.27390 3.33696 3.36811 3.90855 4.03352 4.14280 4.18346 4.29325 4.44569 4.46183 4.52338 4.70049 4.80481 4.83839 4.93423 4.95882 5.00403 5.07728 5.13355 5.15010 5.20501 5.25624 5.35285 5.37743 5.40206 5.41104 5.57006 5.61329 5.64586 5.68982 5.69875 5.73874 5.86364 5.90306 5.92615 5.94376 6.02885 6.26845 6.30582 6.50183 6.56553 7.20414 7.31970 7.35985 7.56191 8.07203 8.09314 8.62635 9.19076 9.55062 10.07047 10.76680 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.032935 B = 0.001318 C = 0.001294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.952348 B =21243.772235 C =21632.779269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.069 3.931 3 H 0.067 0.933 4 C -0.152 4.152 5 C -0.152 4.152 6 C 0.074 3.926 7 H 0.069 0.931 8 C -0.097 4.097 9 C -0.138 4.138 10 C 0.511 3.489 11 O -0.540 6.540 12 N -0.731 5.731 13 C 0.121 3.879 14 C 0.045 3.955 15 N -0.515 5.515 16 C 0.018 3.982 17 C 0.047 3.953 18 C 0.443 3.557 19 O -0.576 6.576 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 O -0.367 6.367 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.399 0.601 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.036 0.964 45 H 0.079 0.921 46 H 0.015 0.985 47 H 0.098 0.902 48 H 0.063 0.937 49 H 0.048 0.952 50 H 0.089 0.911 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.392 17.141 -28.263 33.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.012 3.988 3 H 0.085 0.915 4 C -0.190 4.190 5 C -0.190 4.190 6 C 0.017 3.983 7 H 0.087 0.913 8 C -0.135 4.135 9 C -0.178 4.178 10 C 0.298 3.702 11 O -0.417 6.417 12 N -0.383 5.383 13 C -0.003 4.003 14 C -0.084 4.084 15 N -0.240 5.240 16 C -0.129 4.129 17 C -0.084 4.084 18 C 0.229 3.771 19 O -0.460 6.460 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 O -0.287 6.287 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.118 0.882 41 H 0.233 0.767 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.054 0.946 45 H 0.097 0.903 46 H 0.033 0.967 47 H 0.116 0.884 48 H 0.081 0.919 49 H 0.066 0.934 50 H 0.107 0.893 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.581 15.203 -28.650 33.095 hybrid contribution 0.652 1.123 1.115 1.712 sum -5.929 16.326 -27.535 32.555 Atomic orbital electron populations 1.21807 0.93199 1.03079 1.02381 1.22962 0.95367 0.95318 0.85197 0.91507 1.23010 0.97856 0.99815 0.98304 1.22980 0.98421 1.01910 0.95672 1.23032 0.84752 0.96942 0.93606 0.91314 1.21407 1.02774 0.96807 0.92480 1.21647 1.03521 0.96958 0.95691 1.20705 0.77096 0.90260 0.82167 1.90723 1.51512 1.26861 1.72629 1.45986 1.69301 1.14035 1.09010 1.21334 1.00909 0.88948 0.89099 1.22254 1.00712 0.92626 0.92830 1.61444 1.26630 1.33721 1.02159 1.22626 0.87333 1.00983 1.02000 1.21866 1.01857 0.96823 0.87862 1.19709 0.84623 0.89863 0.82928 1.90493 1.54354 1.30079 1.71090 1.41857 1.62731 1.11333 1.04163 1.19708 1.45550 0.89494 0.88068 0.87889 1.25253 0.97375 0.98252 0.97022 1.69613 1.49907 1.24264 1.10608 0.85861 0.78353 0.81323 0.78781 1.20446 1.20939 1.19385 1.89159 1.26981 1.74408 1.38135 0.91680 0.91825 0.91243 0.90518 0.90677 0.90254 0.90495 0.90110 0.89769 0.89061 0.88207 0.76710 0.90305 0.91246 0.94611 0.90288 0.96657 0.88378 0.91858 0.93363 0.89319 0.77509 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.52 37.16 0.35 -0.42 16 2 C 0.07 0.42 3.92 -25.95 -0.10 0.32 16 3 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 4 C -0.15 -0.77 6.63 -25.16 -0.17 -0.94 16 5 C -0.15 -0.86 6.63 -25.17 -0.17 -1.03 16 6 C 0.07 0.50 3.24 -25.96 -0.08 0.42 16 7 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 8 C -0.10 -0.77 4.13 -26.73 -0.11 -0.88 16 9 C -0.14 -1.03 5.64 -27.88 -0.16 -1.19 16 10 C 0.51 5.65 7.83 -10.99 -0.09 5.56 16 11 O -0.54 -8.31 15.98 5.56 0.09 -8.22 16 12 N -0.73 -7.07 5.56 -60.29 -0.33 -7.40 16 13 C 0.12 1.48 5.60 -4.04 -0.02 1.46 16 14 C 0.04 0.54 5.07 -3.83 -0.02 0.52 16 15 N -0.52 -8.54 4.50 -244.37 -1.10 -9.64 16 16 C 0.02 0.30 8.96 60.07 0.54 0.84 16 17 C 0.05 0.83 5.45 -4.97 -0.03 0.80 16 18 C 0.44 10.44 7.47 -10.99 -0.08 10.36 16 19 O -0.58 -15.56 13.91 5.55 0.08 -15.48 16 20 N -0.56 -14.24 5.29 -10.97 -0.06 -14.30 16 21 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 22 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 25 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 O -0.37 -3.09 10.83 -35.23 -0.38 -3.47 16 30 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.39 7.87 -51.93 -0.41 -0.02 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.49 7.87 -51.93 -0.41 0.08 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 38 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.10 0.70 8.01 -51.93 -0.42 0.29 16 41 H 0.40 2.62 8.47 -40.82 -0.35 2.27 16 42 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.07 0.93 6.55 -51.92 -0.34 0.59 16 44 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 45 H 0.08 0.86 7.93 -51.93 -0.41 0.45 16 46 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.10 1.96 5.82 -51.93 -0.30 1.66 16 48 H 0.06 0.94 6.47 -51.93 -0.34 0.61 16 49 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 50 H 0.09 1.39 7.93 -51.93 -0.41 0.98 16 51 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 52 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 419.43 15.07 6.32 6.32 Total: -1.00 -34.13 419.43 -9.19 -43.32 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -9.13 Total: 8.71 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -0.37 Total: 7.86 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.77 Total: -55.10 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.22 Total: -27.18 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -34.13 -9.19 -43.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713476541.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.953 kcal (2) G-P(sol) polarization free energy of solvation -34.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds