Wall clock time and date at job start Wed Apr 1 2020 00:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.41729 * 2 1 4 4 C 1.54487 * 110.37340 * 237.69003 * 2 1 3 5 5 C 1.54505 * 104.06179 * 217.18979 * 4 2 1 6 6 C 1.54472 * 104.06681 * 0.02562 * 5 4 2 7 7 H 1.09004 * 110.37299 * 265.14702 * 6 5 4 8 8 C 1.52998 * 110.37541 * 142.92132 * 6 5 4 9 9 C 1.53001 * 109.47152 * 175.00108 * 8 6 5 10 10 C 1.50702 * 109.47002 * 180.02562 * 9 8 6 11 11 O 1.21282 * 119.99778 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99946 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00143 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47560 * 179.97438 * 13 12 10 15 15 N 1.46895 * 109.47285 * 180.02562 * 14 13 12 16 16 C 1.46902 * 110.99772 * 66.05442 * 15 14 13 17 17 C 1.46907 * 110.99990 * 190.00192 * 15 14 13 18 18 C 1.50698 * 109.47121 * 170.00075 * 17 15 14 19 19 O 1.21290 * 119.99998 * 0.02562 * 18 17 15 20 20 N 1.34773 * 120.00006 * 180.02562 * 18 17 15 21 21 C 1.37098 * 119.99977 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00456 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99998 * 180.02562 * 21 20 18 24 24 N 1.31415 * 120.00034 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99992 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47031 * 89.99969 * 25 23 21 27 27 H 1.48499 * 109.46906 * 209.99807 * 25 23 21 28 28 H 1.48500 * 109.46986 * 329.99866 * 25 23 21 29 29 O 1.44421 * 110.37396 * 122.31316 * 2 1 3 30 30 H 1.09010 * 109.46831 * 182.30651 * 1 2 3 31 31 H 1.08996 * 109.46987 * 302.30547 * 1 2 3 32 32 H 1.08996 * 109.46862 * 62.31233 * 1 2 3 33 33 H 1.09003 * 110.50578 * 335.83854 * 4 2 1 34 34 H 1.09000 * 110.50989 * 98.54420 * 4 2 1 35 35 H 1.09003 * 110.50916 * 118.64999 * 5 4 2 36 36 H 1.08997 * 110.51173 * 241.35111 * 5 4 2 37 37 H 1.09000 * 109.47136 * 294.99877 * 8 6 5 38 38 H 1.08999 * 109.47367 * 54.99807 * 8 6 5 39 39 H 1.09000 * 109.46911 * 299.99907 * 9 8 6 40 40 H 1.08995 * 109.47537 * 60.00007 * 9 8 6 41 41 H 0.97002 * 120.00433 * 359.97438 * 12 10 9 42 42 H 1.09001 * 109.47429 * 300.00636 * 13 12 10 43 43 H 1.09012 * 109.46701 * 60.00061 * 13 12 10 44 44 H 1.09000 * 109.47195 * 300.00702 * 14 13 12 45 45 H 1.09005 * 109.46337 * 60.00582 * 14 13 12 46 46 H 1.09000 * 109.47459 * 59.99648 * 16 15 14 47 47 H 1.09002 * 109.47255 * 179.97438 * 16 15 14 48 48 H 1.09005 * 109.46922 * 299.99655 * 16 15 14 49 49 H 1.08996 * 109.47251 * 290.00258 * 17 15 14 50 50 H 1.08994 * 109.46728 * 50.00609 * 17 15 14 51 51 H 0.97003 * 120.00220 * 0.02562 * 20 18 17 52 52 H 0.96998 * 119.99663 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0678 -0.7741 -1.2240 5 6 3.3178 -1.5057 -0.6859 6 6 3.3870 -1.0877 0.7996 7 1 4.0520 -0.2328 0.9227 8 6 3.8624 -2.2593 1.6610 9 6 4.0429 -1.7897 3.1059 10 6 4.5118 -2.9436 3.9543 11 8 4.6842 -4.0343 3.4527 12 7 4.7387 -2.7638 5.2706 13 6 5.1939 -3.8856 6.0954 14 6 5.3746 -3.4161 7.5403 15 7 5.8317 -4.5409 8.3672 16 6 7.1781 -4.9735 7.9696 17 6 5.7897 -4.1961 9.7947 18 6 6.0256 -5.4360 10.6181 19 8 6.2109 -6.5019 10.0698 20 7 6.0305 -5.3605 11.9637 21 6 6.2456 -6.4884 12.7127 22 1 6.4107 -7.4375 12.2246 23 6 6.2503 -6.4106 14.1000 24 7 6.0489 -5.2558 14.6941 25 14 6.5426 -7.9476 15.1207 26 1 7.9976 -8.1052 15.3726 27 1 5.8265 -7.8254 16.4159 28 1 6.0362 -9.1341 14.3851 29 8 2.0328 -0.7237 1.1442 30 1 -0.3633 -1.0269 0.0414 31 1 -0.3633 0.5492 0.8686 32 1 -0.3633 0.4775 -0.9100 33 1 1.3275 -1.4919 -1.5772 34 1 2.3430 -0.0839 -2.0216 35 1 3.1955 -2.5853 -0.7733 36 1 4.2109 -1.1773 -1.2175 37 1 3.1217 -3.0583 1.6285 38 1 4.8133 -2.6297 1.2779 39 1 4.7837 -0.9908 3.1384 40 1 3.0921 -1.4194 3.4892 41 1 4.6005 -1.8916 5.6719 42 1 4.4535 -4.6849 6.0626 43 1 6.1451 -4.2557 5.7124 44 1 6.1153 -2.6171 7.5728 45 1 4.4236 -3.0459 7.9235 46 1 7.8762 -4.1451 8.0896 47 1 7.4923 -5.8069 8.5980 48 1 7.1649 -5.2893 6.9264 49 1 6.5645 -3.4615 10.0140 50 1 4.8131 -3.7782 10.0388 51 1 5.8820 -4.5081 12.4022 52 1 6.0525 -5.2015 15.6626 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713476541.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:46 Heat of formation + Delta-G solvation = -153.473135 kcal Electronic energy + Delta-G solvation = -28655.564350 eV Core-core repulsion = 24460.521085 eV Total energy + Delta-G solvation = -4195.043264 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.96995 -40.44390 -40.22857 -38.19468 -36.02109 -35.48597 -34.89089 -33.26992 -33.13872 -31.82084 -30.56397 -29.11964 -27.57040 -26.86262 -25.30705 -23.82713 -22.35286 -22.24339 -21.70123 -21.24585 -20.93498 -19.84724 -18.17553 -17.65675 -17.49855 -17.22351 -17.12638 -16.77070 -16.55639 -16.25250 -16.00627 -15.87172 -15.65299 -15.16232 -15.01546 -14.72427 -14.64658 -14.36099 -14.07113 -13.87311 -13.77485 -13.45117 -13.35890 -13.07352 -13.02397 -12.92200 -12.62400 -12.57642 -12.55693 -12.50628 -12.39656 -12.15655 -12.09559 -12.04600 -11.79666 -11.64263 -11.48320 -11.45266 -10.91560 -10.63956 -10.28544 -10.09859 -9.98481 -9.23904 -8.45548 -5.93768 1.38327 1.42233 1.54726 1.65800 2.04195 2.07293 2.31435 2.90182 2.92174 3.21604 3.42921 3.64199 3.72047 3.82121 3.90453 3.98859 4.05286 4.06602 4.17484 4.25963 4.34436 4.36338 4.44061 4.46820 4.51446 4.53321 4.58536 4.63882 4.64022 4.68551 4.73879 4.84023 4.87798 4.95912 4.96546 4.98354 5.11780 5.18158 5.20644 5.21282 5.27218 5.32181 5.41842 5.42842 5.85676 6.03755 6.05272 6.17139 6.56938 6.62738 7.14918 7.28193 7.58446 8.15009 8.71800 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.032935 B = 0.001318 C = 0.001294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.952348 B =21243.772235 C =21632.779269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.062 3.938 3 H 0.079 0.921 4 C -0.150 4.150 5 C -0.154 4.154 6 C 0.076 3.924 7 H 0.088 0.912 8 C -0.095 4.095 9 C -0.127 4.127 10 C 0.507 3.493 11 O -0.591 6.591 12 N -0.716 5.716 13 C 0.129 3.871 14 C 0.053 3.947 15 N -0.541 5.541 16 C 0.025 3.975 17 C 0.061 3.939 18 C 0.439 3.561 19 O -0.617 6.617 20 N -0.573 5.573 21 C -0.333 4.333 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.275 1.275 29 O -0.392 6.392 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.053 0.947 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.109 0.891 41 H 0.418 0.582 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.098 0.902 46 H 0.036 0.964 47 H 0.056 0.944 48 H 0.072 0.928 49 H 0.074 0.926 50 H 0.114 0.886 51 H 0.397 0.603 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.457 19.949 -28.716 35.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.005 3.995 3 H 0.097 0.903 4 C -0.187 4.187 5 C -0.192 4.192 6 C 0.019 3.981 7 H 0.105 0.895 8 C -0.133 4.133 9 C -0.166 4.166 10 C 0.295 3.705 11 O -0.471 6.471 12 N -0.369 5.369 13 C 0.004 3.996 14 C -0.074 4.074 15 N -0.266 5.266 16 C -0.123 4.123 17 C -0.070 4.070 18 C 0.226 3.774 19 O -0.503 6.503 20 N -0.211 5.211 21 C -0.463 4.463 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.200 1.200 29 O -0.312 6.312 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.141 0.859 40 H 0.127 0.873 41 H 0.256 0.744 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.116 0.884 46 H 0.054 0.946 47 H 0.074 0.926 48 H 0.090 0.910 49 H 0.091 0.909 50 H 0.132 0.868 51 H 0.231 0.769 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.658 18.082 -29.091 34.894 hybrid contribution 0.653 0.256 1.183 1.375 sum -6.005 18.338 -27.908 33.929 Atomic orbital electron populations 1.21825 0.92954 1.02476 1.03152 1.23152 0.95703 0.95780 0.84867 0.90315 1.23015 0.97384 0.99925 0.98415 1.23009 0.99482 1.01339 0.95384 1.23072 0.84527 0.96837 0.93709 0.89455 1.21353 1.01810 0.96770 0.93391 1.21647 1.04647 0.96002 0.94344 1.21395 0.76072 0.90472 0.82540 1.90707 1.53747 1.29075 1.73606 1.45819 1.68395 1.14240 1.08475 1.21070 0.99457 0.89220 0.89857 1.22247 1.02185 0.91583 0.91435 1.61329 1.26754 1.36412 1.02100 1.22459 0.88028 1.00293 1.01507 1.21733 1.04008 0.93735 0.87536 1.20840 0.82432 0.91433 0.82678 1.90475 1.55522 1.32484 1.71798 1.41912 1.63464 1.10835 1.04889 1.19647 1.47848 0.89679 0.89106 0.90490 1.25985 0.96510 1.01182 0.97391 1.69666 1.49687 1.25540 1.11180 0.84962 0.78573 0.77596 0.77411 1.19642 1.19502 1.19986 1.89130 1.27789 1.74896 1.39380 0.92851 0.92179 0.89458 0.90936 0.88898 0.91466 0.88923 0.92844 0.90135 0.85884 0.87296 0.74439 0.93103 0.92530 0.91922 0.88408 0.94564 0.92551 0.90965 0.90854 0.86758 0.76937 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.52 71.98 0.69 -0.70 16 2 C 0.06 0.66 3.92 31.10 0.12 0.78 16 3 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 4 C -0.15 -1.29 6.63 31.61 0.21 -1.08 16 5 C -0.15 -1.57 6.63 31.61 0.21 -1.36 16 6 C 0.08 0.91 3.24 31.09 0.10 1.01 16 7 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 8 C -0.10 -1.48 4.13 30.59 0.13 -1.35 16 9 C -0.13 -1.66 5.64 29.85 0.17 -1.50 16 10 C 0.51 10.75 7.83 87.66 0.69 11.44 16 11 O -0.59 -18.61 15.98 -3.04 -0.05 -18.66 16 12 N -0.72 -12.46 5.56 -463.05 -2.57 -15.03 16 13 C 0.13 3.02 5.60 86.38 0.48 3.51 16 14 C 0.05 1.14 5.07 86.30 0.44 1.58 16 15 N -0.54 -17.18 4.50 -927.04 -4.17 -21.35 16 16 C 0.03 0.81 8.96 127.69 1.14 1.96 16 17 C 0.06 2.03 5.45 85.55 0.47 2.50 16 18 C 0.44 20.86 7.47 87.66 0.66 21.52 16 19 O -0.62 -34.46 13.91 -3.06 -0.04 -34.50 16 20 N -0.57 -29.31 5.29 -306.99 -1.62 -30.94 16 21 C -0.33 -19.01 9.68 84.04 0.81 -18.19 16 22 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 23 C -0.01 -0.58 5.50 84.93 0.47 -0.12 16 24 N -0.92 -49.42 13.05 21.66 0.28 -49.13 16 25 Si 0.99 43.18 29.55 68.60 2.03 45.20 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 27 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 28 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 29 O -0.39 -6.13 10.83 -148.98 -1.61 -7.74 16 30 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.07 0.68 7.87 -2.39 -0.02 0.66 16 34 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.07 0.83 7.87 -2.39 -0.02 0.81 16 36 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 38 H 0.08 1.28 8.10 -2.39 -0.02 1.27 16 39 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.11 1.29 8.01 -2.39 -0.02 1.28 16 41 H 0.42 4.08 8.47 -92.71 -0.79 3.29 16 42 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.06 1.49 6.55 -2.38 -0.02 1.47 16 44 H 0.06 1.07 8.12 -2.39 -0.02 1.05 16 45 H 0.10 1.77 7.93 -2.38 -0.02 1.75 16 46 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.06 2.31 5.82 -2.39 -0.01 2.30 16 48 H 0.07 2.16 6.47 -2.38 -0.02 2.14 16 49 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 50 H 0.11 3.25 7.93 -2.39 -0.02 3.24 16 51 H 0.40 19.08 7.90 -92.71 -0.73 18.35 16 52 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -77.18 419.43 -1.59 -78.77 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: -0.60 Total: 33.40 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: 6.78 Total: 19.98 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -8.08 Total: -116.45 kcal Atomic # 8 Polarization: -59.19 SS G_CDS: -1.70 Total: -60.90 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -77.18 -1.59 -78.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713476541.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.703 kcal (2) G-P(sol) polarization free energy of solvation -77.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds