Wall clock time and date at job start Wed Apr 1 2020 00:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.89570 * 2 1 4 4 C 1.54380 * 109.83447 * 239.07051 * 2 1 3 5 5 C 1.55306 * 102.25393 * 219.13067 * 4 2 1 6 6 C 1.54948 * 100.94347 * 34.12827 * 5 4 2 7 7 H 1.08997 * 110.30605 * 82.56917 * 6 5 4 8 8 C 1.52994 * 110.30968 * 204.64334 * 6 5 4 9 9 C 1.52996 * 109.47118 * 184.99907 * 8 6 5 10 10 C 1.50702 * 109.47159 * 179.97438 * 9 8 6 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72352 * 10 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 14 14 C 1.52997 * 109.47555 * 180.02562 * 13 12 10 15 15 N 1.46902 * 109.47411 * 180.02562 * 14 13 12 16 16 C 1.46898 * 110.99926 * 66.04687 * 15 14 13 17 17 C 1.46900 * 110.99813 * 190.00182 * 15 14 13 18 18 C 1.50703 * 109.46627 * 169.99699 * 17 15 14 19 19 O 1.21284 * 120.00321 * 0.02562 * 18 17 15 20 20 N 1.34786 * 119.99514 * 180.02562 * 18 17 15 21 21 C 1.37097 * 119.99388 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00671 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99595 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99961 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99843 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47540 * 59.99298 * 25 23 21 27 27 H 1.48507 * 109.47069 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47105 * 299.99044 * 25 23 21 29 29 O 1.43240 * 109.83443 * 120.93277 * 2 1 3 30 30 H 1.09004 * 109.46806 * 180.92908 * 1 2 3 31 31 H 1.08996 * 109.47148 * 300.93432 * 1 2 3 32 32 H 1.08996 * 109.47042 * 60.93280 * 1 2 3 33 33 H 1.08999 * 110.85163 * 100.93420 * 4 2 1 34 34 H 1.09005 * 111.01973 * 337.39710 * 4 2 1 35 35 H 1.09009 * 111.12026 * 276.20960 * 5 4 2 36 36 H 1.08995 * 111.16297 * 152.06910 * 5 4 2 37 37 H 1.09004 * 109.47131 * 64.99971 * 8 6 5 38 38 H 1.09000 * 109.47504 * 305.00275 * 8 6 5 39 39 H 1.09004 * 109.47066 * 60.00025 * 9 8 6 40 40 H 1.08994 * 109.47405 * 299.99855 * 9 8 6 41 41 H 0.97000 * 120.00317 * 0.28382 * 12 10 9 42 42 H 1.08998 * 109.47134 * 300.00670 * 13 12 10 43 43 H 1.09002 * 109.46857 * 59.99862 * 13 12 10 44 44 H 1.08998 * 109.47382 * 300.00439 * 14 13 12 45 45 H 1.09005 * 109.46800 * 60.00640 * 14 13 12 46 46 H 1.08999 * 109.47080 * 60.00072 * 16 15 14 47 47 H 1.08997 * 109.46676 * 180.02562 * 16 15 14 48 48 H 1.08998 * 109.47085 * 300.00111 * 16 15 14 49 49 H 1.08998 * 109.47297 * 289.99615 * 17 15 14 50 50 H 1.08997 * 109.47246 * 50.00512 * 17 15 14 51 51 H 0.96997 * 119.99855 * 359.97438 * 20 18 17 52 52 H 0.97004 * 120.00042 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0250 0.0000 4 6 2.0538 -0.7464 -1.2457 5 6 3.2731 -1.5221 -0.6768 6 6 2.7748 -1.8444 0.7546 7 1 2.1416 -2.7315 0.7438 8 6 3.9626 -2.0521 1.6962 9 6 3.4533 -2.4905 3.0706 10 6 4.6234 -2.6957 3.9980 11 8 5.7534 -2.5092 3.5990 12 7 4.4137 -3.0807 5.2725 13 6 5.5507 -3.2743 6.1757 14 6 5.0412 -3.7080 7.5516 15 7 6.1813 -3.9016 8.4574 16 6 6.8646 -2.6286 8.7232 17 6 5.7563 -4.5423 9.7091 18 6 6.9711 -4.9466 10.5041 19 8 8.0815 -4.7226 10.0708 20 7 6.8234 -5.5572 11.6966 21 6 7.9285 -5.9245 12.4200 22 1 8.9173 -5.7251 12.0343 23 6 7.7763 -6.5545 13.6492 24 7 6.5732 -6.7976 14.1184 25 14 9.2821 -7.0556 14.6346 26 1 10.0930 -5.8514 14.9465 27 1 8.8524 -7.7039 15.8997 28 1 10.0978 -8.0098 13.8412 29 8 2.0160 -0.6926 1.1558 30 1 -0.3633 -1.0276 0.0167 31 1 -0.3633 0.5283 0.8814 32 1 -0.3633 0.4993 -0.8982 33 1 2.3672 -0.0424 -2.0166 34 1 1.3028 -1.4347 -1.6336 35 1 4.1621 -0.8918 -0.6506 36 1 3.4581 -2.4347 -1.2432 37 1 4.5159 -1.1181 1.7947 38 1 4.6186 -2.8217 1.2893 39 1 2.9001 -3.4246 2.9721 40 1 2.7974 -1.7210 3.4775 41 1 3.5099 -3.2296 5.5917 42 1 6.2079 -4.0449 5.7725 43 1 6.1028 -2.3392 6.2704 44 1 4.3838 -2.9378 7.9549 45 1 4.4894 -4.6433 7.4564 46 1 6.1660 -1.9308 9.1848 47 1 7.7047 -2.8008 9.3959 48 1 7.2303 -2.2099 7.7856 49 1 5.1579 -3.8414 10.2912 50 1 5.1608 -5.4263 9.4809 51 1 5.9353 -5.7360 12.0433 52 1 6.4669 -7.2377 14.9763 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713476542.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:50 Heat of formation + Delta-G solvation = -153.639526 kcal Electronic energy + Delta-G solvation = -28666.056748 eV Core-core repulsion = 24471.006268 eV Total energy + Delta-G solvation = -4195.050479 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.97772 -40.46528 -40.24342 -38.19379 -36.01852 -35.48352 -34.88881 -33.26777 -33.16884 -31.78058 -30.54507 -29.11918 -27.57266 -26.86635 -25.32704 -23.86199 -22.42415 -22.31946 -21.58963 -21.08224 -20.91839 -19.84433 -18.19137 -17.95100 -17.65681 -17.28553 -16.97520 -16.71647 -16.52223 -16.37196 -15.97972 -15.70675 -15.29517 -15.18534 -15.02358 -14.75360 -14.54603 -14.43835 -14.16116 -13.96100 -13.77330 -13.44375 -13.33262 -13.06109 -13.02272 -12.92206 -12.64513 -12.60917 -12.57397 -12.54931 -12.40986 -12.15400 -12.08750 -12.01751 -11.78387 -11.68406 -11.58587 -11.44647 -10.90571 -10.41800 -10.28375 -10.09598 -9.98417 -9.24381 -8.45131 -5.93426 1.40445 1.42350 1.52896 1.66249 2.04514 2.07601 2.31677 2.84706 2.92044 3.21943 3.42978 3.59659 3.73012 3.81904 3.89365 3.91658 4.06077 4.16026 4.18540 4.25984 4.34921 4.36655 4.42465 4.46406 4.51411 4.53469 4.58098 4.63410 4.64093 4.74988 4.79035 4.80991 4.88389 4.93352 4.96367 4.99524 5.07954 5.14087 5.20209 5.26223 5.32540 5.38237 5.42028 5.43025 5.85570 6.05013 6.16775 6.20045 6.57215 6.63037 7.15027 7.28471 7.58644 8.15229 8.71963 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.040646 B = 0.001301 C = 0.001282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.713053 B =21515.665715 C =21834.599781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.066 3.934 3 H 0.074 0.926 4 C -0.147 4.147 5 C -0.154 4.154 6 C 0.081 3.919 7 H 0.085 0.915 8 C -0.099 4.099 9 C -0.126 4.126 10 C 0.507 3.493 11 O -0.591 6.591 12 N -0.716 5.716 13 C 0.129 3.871 14 C 0.053 3.947 15 N -0.540 5.540 16 C 0.025 3.975 17 C 0.061 3.939 18 C 0.439 3.561 19 O -0.617 6.617 20 N -0.573 5.573 21 C -0.334 4.334 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.273 1.273 29 O -0.396 6.396 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.121 0.879 40 H 0.109 0.891 41 H 0.418 0.582 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.100 0.900 46 H 0.035 0.965 47 H 0.056 0.944 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.115 0.885 51 H 0.397 0.603 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.881 10.731 -28.069 35.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.008 3.992 3 H 0.092 0.908 4 C -0.184 4.184 5 C -0.192 4.192 6 C 0.024 3.976 7 H 0.103 0.897 8 C -0.138 4.138 9 C -0.166 4.166 10 C 0.295 3.705 11 O -0.471 6.471 12 N -0.370 5.370 13 C 0.004 3.996 14 C -0.075 4.075 15 N -0.265 5.265 16 C -0.123 4.123 17 C -0.070 4.070 18 C 0.226 3.774 19 O -0.503 6.503 20 N -0.211 5.211 21 C -0.464 4.464 22 H 0.095 0.905 23 C -0.210 4.210 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.198 1.198 27 H -0.194 1.194 28 H -0.198 1.198 29 O -0.316 6.316 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.139 0.861 40 H 0.128 0.872 41 H 0.255 0.745 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.118 0.882 46 H 0.053 0.947 47 H 0.075 0.925 48 H 0.090 0.910 49 H 0.091 0.909 50 H 0.133 0.867 51 H 0.231 0.769 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.125 10.666 -28.460 34.885 hybrid contribution -0.221 0.099 1.353 1.375 sum -17.345 10.766 -27.106 33.934 Atomic orbital electron populations 1.22115 0.94128 1.02662 1.02679 1.22861 0.94950 0.96258 0.85084 0.90800 1.23183 0.97676 0.99943 0.97597 1.23323 0.98604 1.01916 0.95352 1.23058 0.91789 0.89430 0.93358 0.89672 1.21438 0.96600 1.01997 0.93724 1.21638 0.95415 1.05475 0.94063 1.21408 0.91254 0.75103 0.82717 1.90704 1.26870 1.52725 1.76825 1.45825 1.10799 1.69421 1.10912 1.21066 0.88845 1.00562 0.89121 1.22252 0.91621 1.02653 0.90942 1.61334 1.26884 1.24878 1.13391 1.22456 0.99047 0.89031 1.01777 1.21736 0.93979 1.01023 0.90285 1.20838 0.91473 0.82495 0.82586 1.90473 1.28688 1.60007 1.71108 1.41907 1.09170 1.52777 1.17220 1.19615 0.88324 1.37275 1.01170 0.90468 1.25982 1.00798 0.96622 0.97633 1.69659 1.22699 1.42613 1.21077 0.85026 0.77612 0.78501 0.77420 1.19820 1.19415 1.19849 1.88417 1.70849 1.40962 1.31398 0.92144 0.92690 0.90172 0.89105 0.89353 0.90974 0.88495 0.92728 0.90335 0.86121 0.87239 0.74458 0.92809 0.92812 0.92135 0.88206 0.94671 0.92501 0.91015 0.90941 0.86661 0.76939 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.44 71.98 0.68 -0.67 16 2 C 0.07 0.72 4.16 31.06 0.13 0.85 16 3 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 4 C -0.15 -1.09 6.54 31.85 0.21 -0.88 16 5 C -0.15 -1.46 6.57 32.05 0.21 -1.25 16 6 C 0.08 0.96 3.40 31.26 0.11 1.07 16 7 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 8 C -0.10 -1.53 4.23 30.59 0.13 -1.40 16 9 C -0.13 -1.68 5.63 29.85 0.17 -1.51 16 10 C 0.51 10.79 7.83 87.66 0.69 11.47 16 11 O -0.59 -18.59 15.98 -3.04 -0.05 -18.64 16 12 N -0.72 -12.55 5.56 -463.06 -2.57 -15.12 16 13 C 0.13 3.03 5.60 86.38 0.48 3.52 16 14 C 0.05 1.14 5.07 86.30 0.44 1.58 16 15 N -0.54 -17.17 4.50 -927.06 -4.17 -21.34 16 16 C 0.02 0.81 8.96 127.69 1.14 1.96 16 17 C 0.06 2.03 5.45 85.56 0.47 2.49 16 18 C 0.44 20.84 7.48 87.66 0.66 21.49 16 19 O -0.62 -34.40 13.91 -3.04 -0.04 -34.45 16 20 N -0.57 -29.27 5.29 -306.98 -1.62 -30.90 16 21 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 22 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 23 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 24 N -0.92 -49.37 13.05 21.66 0.28 -49.09 16 25 Si 0.99 43.11 29.55 68.60 2.03 45.13 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 28 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 29 O -0.40 -6.07 10.47 -148.98 -1.56 -7.63 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.09 0.48 7.86 -2.38 -0.02 0.46 16 35 H 0.07 0.81 8.06 -2.38 -0.02 0.79 16 36 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.05 1.09 8.10 -2.38 -0.02 1.07 16 38 H 0.08 1.27 8.10 -2.39 -0.02 1.25 16 39 H 0.12 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.11 1.29 7.99 -2.39 -0.02 1.27 16 41 H 0.42 4.15 8.47 -92.71 -0.79 3.37 16 42 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.05 1.44 6.55 -2.39 -0.02 1.43 16 44 H 0.06 1.06 8.12 -2.39 -0.02 1.04 16 45 H 0.10 1.77 7.93 -2.38 -0.02 1.75 16 46 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.06 2.35 5.82 -2.39 -0.01 2.34 16 48 H 0.07 2.17 6.47 -2.39 -0.02 2.16 16 49 H 0.07 2.11 8.12 -2.39 -0.02 2.09 16 50 H 0.12 3.26 7.93 -2.39 -0.02 3.24 16 51 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 52 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -76.58 419.48 -1.52 -78.10 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: -0.60 Total: 33.53 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: 6.79 Total: 20.40 kcal Atomic # 7 Polarization: -108.36 SS G_CDS: -8.08 Total: -116.45 kcal Atomic # 8 Polarization: -59.07 SS G_CDS: -1.65 Total: -60.72 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -76.58 -1.52 -78.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713476542.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.537 kcal (2) G-P(sol) polarization free energy of solvation -76.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds