Wall clock time and date at job start Wed Apr 1 2020 00:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.27274 * 2 1 4 4 C 1.54947 * 110.30874 * 122.19316 * 2 1 3 5 5 C 1.55307 * 100.94272 * 155.36267 * 4 2 1 6 6 C 1.54390 * 102.25162 * 325.86753 * 5 4 2 7 7 H 1.09000 * 109.82918 * 261.84296 * 6 5 4 8 8 C 1.52994 * 109.83034 * 140.86954 * 6 5 4 9 9 C 1.52996 * 109.47056 * 175.41436 * 8 6 5 10 10 C 1.50704 * 109.47185 * 179.97438 * 9 8 6 11 11 O 1.21284 * 119.99881 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00045 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99679 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.46822 * 179.97438 * 13 12 10 15 15 N 1.46899 * 109.47163 * 179.97438 * 14 13 12 16 16 C 1.46898 * 111.00250 * 293.96001 * 15 14 13 17 17 C 1.46895 * 110.99768 * 170.00233 * 15 14 13 18 18 C 1.50701 * 109.47119 * 190.00186 * 17 15 14 19 19 O 1.21292 * 119.99977 * 0.02562 * 18 17 15 20 20 N 1.34774 * 120.00536 * 180.02562 * 18 17 15 21 21 C 1.37100 * 120.00562 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99675 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99904 * 180.02562 * 21 20 18 24 24 N 1.31417 * 119.99596 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00470 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47127 * 90.00074 * 25 23 21 27 27 H 1.48501 * 109.47299 * 210.00286 * 25 23 21 28 28 H 1.48506 * 109.47142 * 330.00326 * 25 23 21 29 29 O 1.43244 * 107.58641 * 21.35598 * 6 5 4 30 30 H 1.09002 * 109.47153 * 180.63696 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.63886 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.63868 * 1 2 3 33 33 H 1.09000 * 111.12910 * 273.27566 * 4 2 1 34 34 H 1.09002 * 111.12472 * 37.44413 * 4 2 1 35 35 H 1.09003 * 110.84897 * 207.68146 * 5 4 2 36 36 H 1.09002 * 111.02648 * 84.13662 * 5 4 2 37 37 H 1.08998 * 109.47286 * 295.41560 * 8 6 5 38 38 H 1.09003 * 109.47375 * 55.41067 * 8 6 5 39 39 H 1.09000 * 109.47358 * 299.99693 * 9 8 6 40 40 H 1.08998 * 109.47528 * 60.00307 * 9 8 6 41 41 H 0.96999 * 120.00112 * 0.02562 * 12 10 9 42 42 H 1.08998 * 109.47507 * 300.00472 * 13 12 10 43 43 H 1.09005 * 109.47041 * 60.00533 * 13 12 10 44 44 H 1.08998 * 109.47578 * 300.00568 * 14 13 12 45 45 H 1.09005 * 109.46764 * 60.00502 * 14 13 12 46 46 H 1.09001 * 109.47105 * 59.99741 * 16 15 14 47 47 H 1.09003 * 109.47329 * 179.97438 * 16 15 14 48 48 H 1.09002 * 109.47062 * 299.99892 * 16 15 14 49 49 H 1.08996 * 109.47479 * 310.00232 * 17 15 14 50 50 H 1.09002 * 109.46949 * 70.01041 * 17 15 14 51 51 H 0.97004 * 119.99390 * 0.02562 * 20 18 17 52 52 H 0.97004 * 119.99611 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7742 1.2297 5 6 3.4699 -1.2031 0.7180 6 6 3.2113 -1.4412 -0.7854 7 1 3.0625 -2.5049 -0.9711 8 6 4.3991 -0.9310 -1.6036 9 6 4.1863 -1.2732 -3.0795 10 6 5.3561 -0.7701 -3.8856 11 8 6.2702 -0.1949 -3.3337 12 7 5.3869 -0.9602 -5.2196 13 6 6.5238 -0.4706 -6.0031 14 6 6.3116 -0.8141 -7.4789 15 7 7.4513 -0.3226 -8.2648 16 6 7.5058 1.1453 -8.2518 17 6 7.4024 -0.8355 -9.6404 18 6 8.6985 -0.5187 -10.3410 19 8 9.5767 0.0755 -9.7521 20 7 8.8819 -0.8956 -11.6219 21 6 10.0612 -0.6078 -12.2592 22 1 10.8434 -0.0795 -11.7345 23 6 10.2499 -0.9960 -13.5799 24 7 11.3805 -0.7205 -14.1905 25 14 8.8971 -1.9104 -14.4872 26 1 8.0056 -0.9332 -15.1621 27 1 9.5023 -2.8109 -15.5011 28 1 8.1079 -2.7142 -13.5194 29 8 2.0286 -0.7157 -1.1413 30 1 -0.3633 -1.0276 0.0114 31 1 -0.3633 0.5039 -0.8957 32 1 -0.3634 0.5237 0.8842 33 1 2.1497 -0.1223 2.0994 34 1 1.4470 -1.6429 1.4493 35 1 3.7966 -2.1217 1.2055 36 1 4.2001 -0.4073 0.8646 37 1 4.4815 0.1499 -1.4894 38 1 5.3147 -1.4045 -1.2491 39 1 4.1041 -2.3541 -3.1937 40 1 3.2709 -0.7996 -3.4340 41 1 4.6560 -1.4206 -5.6609 42 1 6.6050 0.6104 -5.8892 43 1 7.4398 -0.9432 -5.6486 44 1 6.2307 -1.8951 -7.5925 45 1 5.3955 -0.3419 -7.8338 46 1 7.6120 1.4959 -7.2252 47 1 8.3589 1.4824 -8.8406 48 1 6.5872 1.5468 -8.6797 49 1 7.2546 -1.9152 -9.6206 50 1 6.5765 -0.3654 -10.1743 51 1 8.1793 -1.3705 -12.0930 52 1 11.5124 -0.9918 -15.1125 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713476543.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:55 Heat of formation + Delta-G solvation = -120.482802 kcal Electronic energy + Delta-G solvation = -28756.345410 eV Core-core repulsion = 24562.732714 eV Total energy + Delta-G solvation = -4193.612696 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.31988 -39.67887 -38.79961 -36.92670 -34.72198 -34.23773 -33.85376 -32.72240 -31.67954 -31.26083 -29.60310 -27.89250 -26.88535 -25.30739 -23.99416 -23.07589 -22.01814 -21.25523 -20.97446 -20.25929 -19.35628 -18.26790 -17.51855 -17.29081 -16.42273 -16.25028 -16.02408 -15.89392 -15.34715 -14.94585 -14.77649 -14.70602 -14.32960 -14.24433 -13.85493 -13.78702 -13.52464 -13.39560 -13.08109 -13.05790 -12.77316 -12.67251 -12.43555 -12.19827 -12.15108 -12.05416 -11.84752 -11.54642 -11.48604 -11.37676 -11.31178 -11.26018 -11.15554 -11.10016 -11.04289 -10.59949 -10.01865 -9.97115 -9.90309 -9.53918 -9.19585 -8.60003 -8.18385 -8.00696 -6.30792 -3.82217 2.50350 2.90105 3.02078 3.06153 3.14773 3.29741 3.73459 3.99324 4.01373 4.10315 4.24398 4.26428 4.50036 4.63300 4.64424 4.73171 4.79173 4.83919 4.86258 4.97110 5.02201 5.08414 5.15615 5.19809 5.21112 5.26595 5.33959 5.36932 5.38186 5.48701 5.49125 5.58114 5.60487 5.69036 5.77963 5.79366 5.82603 5.84254 5.90777 5.92823 5.97922 6.25834 6.50784 6.65323 7.08998 7.23522 7.31407 7.58577 8.06961 8.14992 8.60471 8.95684 9.42625 9.83615 10.82361 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.033474 B = 0.001364 C = 0.001342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.265927 B =20519.967248 C =20862.775305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.074 3.926 3 H 0.070 0.930 4 C -0.152 4.152 5 C -0.153 4.153 6 C 0.080 3.920 7 H 0.081 0.919 8 C -0.113 4.113 9 C -0.136 4.136 10 C 0.511 3.489 11 O -0.541 6.541 12 N -0.732 5.732 13 C 0.121 3.879 14 C 0.045 3.955 15 N -0.515 5.515 16 C 0.017 3.983 17 C 0.044 3.956 18 C 0.452 3.548 19 O -0.558 6.558 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 O -0.375 6.375 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.399 0.601 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.036 0.964 46 H 0.065 0.935 47 H 0.098 0.902 48 H 0.016 0.984 49 H 0.090 0.910 50 H 0.050 0.950 51 H 0.370 0.630 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.401 -3.520 27.055 37.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.017 3.983 3 H 0.087 0.913 4 C -0.190 4.190 5 C -0.190 4.190 6 C 0.022 3.978 7 H 0.098 0.902 8 C -0.151 4.151 9 C -0.176 4.176 10 C 0.297 3.703 11 O -0.417 6.417 12 N -0.384 5.384 13 C -0.003 4.003 14 C -0.084 4.084 15 N -0.240 5.240 16 C -0.131 4.131 17 C -0.087 4.087 18 C 0.238 3.762 19 O -0.439 6.439 20 N -0.231 5.231 21 C -0.433 4.433 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 O -0.294 6.294 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.117 0.883 41 H 0.233 0.767 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.055 0.945 46 H 0.083 0.917 47 H 0.117 0.883 48 H 0.035 0.965 49 H 0.108 0.892 50 H 0.068 0.932 51 H 0.203 0.797 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.634 -2.869 27.659 36.494 hybrid contribution -1.961 -0.751 -1.432 2.542 sum -25.595 -3.621 26.227 36.825 Atomic orbital electron populations 1.21887 0.93759 1.02747 1.02451 1.22957 0.94785 0.95671 0.84904 0.91257 1.23319 0.96281 1.00893 0.98512 1.23173 0.97774 1.02992 0.95084 1.22784 0.85351 0.96075 0.93544 0.90155 1.21732 0.97419 1.02929 0.92981 1.21613 0.97437 1.02736 0.95803 1.20761 0.88174 0.79222 0.82114 1.90722 1.38446 1.41926 1.70645 1.45988 1.24256 1.60417 1.07742 1.21326 0.89173 1.00087 0.89726 1.22257 0.92430 1.00866 0.92846 1.61428 1.40417 1.10502 1.11617 1.22645 1.01697 0.86108 1.02615 1.21899 0.97033 1.00908 0.88865 1.19612 0.89163 0.85021 0.82414 1.90537 1.44372 1.43841 1.65167 1.42206 1.16793 1.52761 1.11304 1.19435 0.93151 1.35422 0.95318 0.86243 1.25032 0.96814 0.97851 0.96427 1.69627 1.23730 1.46196 1.12593 0.86675 0.81980 0.80284 0.80449 1.19690 1.20177 1.19506 1.88437 1.42072 1.64778 1.34160 0.91978 0.91816 0.91324 0.89987 0.90313 0.89941 0.90102 0.90651 0.90113 0.89015 0.88286 0.76726 0.91210 0.90283 0.90288 0.94541 0.91677 0.88317 0.96528 0.89195 0.93232 0.79746 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.62 37.16 0.36 -0.38 16 2 C 0.07 0.45 4.07 -25.70 -0.10 0.34 16 3 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 4 C -0.15 -0.69 6.57 -24.48 -0.16 -0.85 16 5 C -0.15 -0.78 6.55 -24.78 -0.16 -0.94 16 6 C 0.08 0.51 3.52 -26.01 -0.09 0.42 16 7 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 8 C -0.11 -0.87 4.07 -26.74 -0.11 -0.98 16 9 C -0.14 -1.00 5.61 -27.88 -0.16 -1.16 16 10 C 0.51 5.53 7.83 -10.98 -0.09 5.45 16 11 O -0.54 -8.22 15.98 5.55 0.09 -8.13 16 12 N -0.73 -6.82 5.56 -60.29 -0.33 -7.16 16 13 C 0.12 1.43 5.60 -4.04 -0.02 1.40 16 14 C 0.04 0.51 5.07 -3.82 -0.02 0.49 16 15 N -0.52 -8.15 4.50 -244.37 -1.10 -9.24 16 16 C 0.02 0.27 8.96 60.06 0.54 0.81 16 17 C 0.04 0.73 5.45 -4.98 -0.03 0.70 16 18 C 0.45 10.21 7.47 -10.99 -0.08 10.13 16 19 O -0.56 -14.86 13.91 5.55 0.08 -14.78 16 20 N -0.59 -13.99 5.09 -10.96 -0.06 -14.04 16 21 C -0.30 -8.59 10.16 -14.93 -0.15 -8.75 16 22 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.74 13.96 55.50 0.77 -24.97 16 25 Si 0.88 19.24 27.74 -169.99 -4.71 14.53 16 26 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 29 O -0.37 -2.97 10.32 -35.23 -0.36 -3.33 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.33 8.06 -51.93 -0.42 -0.09 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.43 7.85 -51.93 -0.41 0.02 16 37 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.10 0.68 7.88 -51.93 -0.41 0.27 16 41 H 0.40 2.47 8.47 -40.82 -0.35 2.12 16 42 H 0.07 0.91 6.55 -51.93 -0.34 0.57 16 43 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.08 0.79 7.93 -51.93 -0.41 0.38 16 45 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 46 H 0.06 0.94 6.47 -51.93 -0.34 0.61 16 47 H 0.10 1.92 5.83 -51.93 -0.30 1.62 16 48 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 49 H 0.09 1.27 7.93 -51.93 -0.41 0.86 16 50 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 51 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 52 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 416.13 15.07 6.27 6.27 Total: -1.00 -35.40 416.13 -8.82 -44.22 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -9.09 Total: 8.91 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -0.37 Total: 7.74 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.72 Total: -55.41 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.20 Total: -26.25 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.40 -8.82 -44.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713476543.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.262 kcal (2) G-P(sol) polarization free energy of solvation -35.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds