Wall clock time and date at job start Wed Apr 1 2020 00:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.27274 * 2 1 4 4 C 1.54947 * 110.30874 * 122.19316 * 2 1 3 5 5 C 1.55307 * 100.94272 * 155.36267 * 4 2 1 6 6 C 1.54390 * 102.25162 * 325.86753 * 5 4 2 7 7 H 1.09000 * 109.82918 * 261.84296 * 6 5 4 8 8 C 1.52994 * 109.83034 * 140.86954 * 6 5 4 9 9 C 1.52996 * 109.47056 * 175.41436 * 8 6 5 10 10 C 1.50704 * 109.47185 * 179.97438 * 9 8 6 11 11 O 1.21284 * 119.99881 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00045 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99679 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.46822 * 179.97438 * 13 12 10 15 15 N 1.46899 * 109.47163 * 179.97438 * 14 13 12 16 16 C 1.46898 * 111.00250 * 293.96001 * 15 14 13 17 17 C 1.46895 * 110.99768 * 170.00233 * 15 14 13 18 18 C 1.50701 * 109.47119 * 190.00186 * 17 15 14 19 19 O 1.21292 * 119.99977 * 0.02562 * 18 17 15 20 20 N 1.34774 * 120.00536 * 180.02562 * 18 17 15 21 21 C 1.37100 * 120.00562 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99675 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99904 * 180.02562 * 21 20 18 24 24 N 1.31417 * 119.99596 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00470 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47127 * 90.00074 * 25 23 21 27 27 H 1.48501 * 109.47299 * 210.00286 * 25 23 21 28 28 H 1.48506 * 109.47142 * 330.00326 * 25 23 21 29 29 O 1.43244 * 107.58641 * 21.35598 * 6 5 4 30 30 H 1.09002 * 109.47153 * 180.63696 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.63886 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.63868 * 1 2 3 33 33 H 1.09000 * 111.12910 * 273.27566 * 4 2 1 34 34 H 1.09002 * 111.12472 * 37.44413 * 4 2 1 35 35 H 1.09003 * 110.84897 * 207.68146 * 5 4 2 36 36 H 1.09002 * 111.02648 * 84.13662 * 5 4 2 37 37 H 1.08998 * 109.47286 * 295.41560 * 8 6 5 38 38 H 1.09003 * 109.47375 * 55.41067 * 8 6 5 39 39 H 1.09000 * 109.47358 * 299.99693 * 9 8 6 40 40 H 1.08998 * 109.47528 * 60.00307 * 9 8 6 41 41 H 0.96999 * 120.00112 * 0.02562 * 12 10 9 42 42 H 1.08998 * 109.47507 * 300.00472 * 13 12 10 43 43 H 1.09005 * 109.47041 * 60.00533 * 13 12 10 44 44 H 1.08998 * 109.47578 * 300.00568 * 14 13 12 45 45 H 1.09005 * 109.46764 * 60.00502 * 14 13 12 46 46 H 1.09001 * 109.47105 * 59.99741 * 16 15 14 47 47 H 1.09003 * 109.47329 * 179.97438 * 16 15 14 48 48 H 1.09002 * 109.47062 * 299.99892 * 16 15 14 49 49 H 1.08996 * 109.47479 * 310.00232 * 17 15 14 50 50 H 1.09002 * 109.46949 * 70.01041 * 17 15 14 51 51 H 0.97004 * 119.99390 * 0.02562 * 20 18 17 52 52 H 0.97004 * 119.99611 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7742 1.2297 5 6 3.4699 -1.2031 0.7180 6 6 3.2113 -1.4412 -0.7854 7 1 3.0625 -2.5049 -0.9711 8 6 4.3991 -0.9310 -1.6036 9 6 4.1863 -1.2732 -3.0795 10 6 5.3561 -0.7701 -3.8856 11 8 6.2702 -0.1949 -3.3337 12 7 5.3869 -0.9602 -5.2196 13 6 6.5238 -0.4706 -6.0031 14 6 6.3116 -0.8141 -7.4789 15 7 7.4513 -0.3226 -8.2648 16 6 7.5058 1.1453 -8.2518 17 6 7.4024 -0.8355 -9.6404 18 6 8.6985 -0.5187 -10.3410 19 8 9.5767 0.0755 -9.7521 20 7 8.8819 -0.8956 -11.6219 21 6 10.0612 -0.6078 -12.2592 22 1 10.8434 -0.0795 -11.7345 23 6 10.2499 -0.9960 -13.5799 24 7 11.3805 -0.7205 -14.1905 25 14 8.8971 -1.9104 -14.4872 26 1 8.0056 -0.9332 -15.1621 27 1 9.5023 -2.8109 -15.5011 28 1 8.1079 -2.7142 -13.5194 29 8 2.0286 -0.7157 -1.1413 30 1 -0.3633 -1.0276 0.0114 31 1 -0.3633 0.5039 -0.8957 32 1 -0.3634 0.5237 0.8842 33 1 2.1497 -0.1223 2.0994 34 1 1.4470 -1.6429 1.4493 35 1 3.7966 -2.1217 1.2055 36 1 4.2001 -0.4073 0.8646 37 1 4.4815 0.1499 -1.4894 38 1 5.3147 -1.4045 -1.2491 39 1 4.1041 -2.3541 -3.1937 40 1 3.2709 -0.7996 -3.4340 41 1 4.6560 -1.4206 -5.6609 42 1 6.6050 0.6104 -5.8892 43 1 7.4398 -0.9432 -5.6486 44 1 6.2307 -1.8951 -7.5925 45 1 5.3955 -0.3419 -7.8338 46 1 7.6120 1.4959 -7.2252 47 1 8.3589 1.4824 -8.8406 48 1 6.5872 1.5468 -8.6797 49 1 7.2546 -1.9152 -9.6206 50 1 6.5765 -0.3654 -10.1743 51 1 8.1793 -1.3705 -12.0930 52 1 11.5124 -0.9918 -15.1125 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713476543.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:55 Heat of formation + Delta-G solvation = -149.159245 kcal Electronic energy + Delta-G solvation = -28757.588914 eV Core-core repulsion = 24562.732714 eV Total energy + Delta-G solvation = -4194.856200 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.00104 -40.54224 -40.28534 -38.24007 -36.05379 -35.50723 -34.84945 -33.74368 -33.16708 -31.83710 -30.61086 -29.20424 -27.56183 -26.82665 -25.22683 -23.85954 -22.44584 -22.30002 -21.58747 -21.24360 -20.99304 -20.16673 -18.18599 -17.96281 -17.65204 -17.30543 -16.99274 -16.80779 -16.66691 -16.39205 -15.87457 -15.59074 -15.29064 -15.24741 -14.86353 -14.81149 -14.69836 -14.41092 -14.21534 -14.17723 -13.80522 -13.70991 -13.26478 -13.21348 -13.09127 -12.92998 -12.65608 -12.59938 -12.57958 -12.56796 -12.38183 -12.12663 -12.01250 -11.96600 -11.79274 -11.68465 -11.60082 -11.45570 -10.91680 -10.41731 -10.37381 -10.21968 -10.09914 -9.24977 -8.39772 -6.00795 1.31363 1.37122 1.46206 1.65895 1.97991 2.04047 2.24799 2.76829 2.85842 3.16608 3.28069 3.60675 3.71111 3.83097 3.87317 3.92100 4.05747 4.13271 4.15629 4.20473 4.31740 4.35588 4.41001 4.44012 4.46726 4.51734 4.60685 4.61791 4.63239 4.75642 4.77678 4.83794 4.88821 4.92958 4.96119 4.98348 5.06987 5.15232 5.19975 5.25135 5.32709 5.37072 5.42393 5.54493 5.87878 5.99433 6.14308 6.18693 6.57192 6.61748 6.90499 7.28634 7.41798 8.00062 8.78078 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.033474 B = 0.001364 C = 0.001342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.265927 B =20519.967248 C =20862.775305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.064 3.936 3 H 0.062 0.938 4 C -0.146 4.146 5 C -0.154 4.154 6 C 0.081 3.919 7 H 0.095 0.905 8 C -0.110 4.110 9 C -0.125 4.125 10 C 0.506 3.494 11 O -0.592 6.592 12 N -0.716 5.716 13 C 0.127 3.873 14 C 0.054 3.946 15 N -0.544 5.544 16 C 0.024 3.976 17 C 0.057 3.943 18 C 0.449 3.551 19 O -0.608 6.608 20 N -0.591 5.591 21 C -0.329 4.329 22 H 0.053 0.947 23 C -0.016 4.016 24 N -0.937 5.937 25 Si 0.966 3.034 26 H -0.257 1.257 27 H -0.277 1.277 28 H -0.228 1.228 29 O -0.393 6.393 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.073 0.927 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.419 0.581 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.103 0.897 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.053 0.947 48 H 0.039 0.961 49 H 0.126 0.874 50 H 0.084 0.916 51 H 0.390 0.610 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.211 -6.156 27.226 41.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.007 3.993 3 H 0.080 0.920 4 C -0.184 4.184 5 C -0.191 4.191 6 C 0.024 3.976 7 H 0.113 0.887 8 C -0.149 4.149 9 C -0.165 4.165 10 C 0.294 3.706 11 O -0.473 6.473 12 N -0.369 5.369 13 C 0.002 3.998 14 C -0.073 4.073 15 N -0.269 5.269 16 C -0.124 4.124 17 C -0.073 4.073 18 C 0.237 3.763 19 O -0.492 6.492 20 N -0.233 5.233 21 C -0.458 4.458 22 H 0.071 0.929 23 C -0.214 4.214 24 N -0.577 5.577 25 Si 0.786 3.214 26 H -0.182 1.182 27 H -0.202 1.202 28 H -0.151 1.151 29 O -0.313 6.313 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.138 0.862 40 H 0.128 0.872 41 H 0.256 0.744 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.121 0.879 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.072 0.928 48 H 0.058 0.942 49 H 0.143 0.857 50 H 0.102 0.898 51 H 0.226 0.774 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -28.506 -5.528 27.840 40.227 hybrid contribution -0.362 0.174 -1.372 1.430 sum -28.868 -5.354 26.468 39.529 Atomic orbital electron populations 1.21874 0.92877 1.02928 1.02816 1.23111 0.95543 0.95435 0.85189 0.92010 1.23309 0.95755 1.01158 0.98169 1.23196 0.98047 1.03447 0.94459 1.22822 0.84357 0.96466 0.93986 0.88740 1.21687 0.97987 1.01391 0.93803 1.21617 0.95863 1.04349 0.94639 1.21440 0.88364 0.78249 0.82511 1.90706 1.40591 1.44294 1.71674 1.45812 1.24011 1.59819 1.07254 1.21083 0.89134 0.98849 0.90711 1.22250 0.91616 1.02340 0.91113 1.61295 1.43514 1.10200 1.11886 1.22459 1.00808 0.86905 1.02254 1.21834 0.93443 1.03311 0.88754 1.20966 0.90860 0.82672 0.81842 1.90531 1.46943 1.45462 1.66284 1.42015 1.15814 1.53604 1.11899 1.19000 0.93986 1.36612 0.96183 0.92885 1.26133 1.00136 0.98346 0.96788 1.69818 1.26872 1.47694 1.13351 0.85349 0.78061 0.78941 0.79052 1.18178 1.20174 1.15124 1.88407 1.42452 1.65094 1.35347 0.91854 0.92567 0.89853 0.88911 0.89502 0.88573 0.90879 0.93031 0.90813 0.86159 0.87219 0.74384 0.92960 0.92974 0.87857 0.91801 0.91221 0.92783 0.94213 0.85651 0.89780 0.77419 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.62 71.98 0.69 -0.53 16 2 C 0.06 0.71 4.07 31.26 0.13 0.83 16 3 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 4 C -0.15 -1.09 6.57 32.05 0.21 -0.88 16 5 C -0.15 -1.37 6.55 31.86 0.21 -1.16 16 6 C 0.08 0.92 3.52 31.06 0.11 1.03 16 7 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 8 C -0.11 -1.65 4.07 30.59 0.12 -1.53 16 9 C -0.13 -1.60 5.61 29.85 0.17 -1.43 16 10 C 0.51 10.45 7.83 87.66 0.69 11.13 16 11 O -0.59 -18.43 15.98 -3.04 -0.05 -18.48 16 12 N -0.72 -11.71 5.56 -463.04 -2.57 -14.28 16 13 C 0.13 2.83 5.60 86.38 0.48 3.31 16 14 C 0.05 1.04 5.07 86.30 0.44 1.47 16 15 N -0.54 -16.04 4.50 -927.06 -4.17 -20.21 16 16 C 0.02 0.74 8.96 127.69 1.14 1.88 16 17 C 0.06 1.68 5.45 85.56 0.47 2.15 16 18 C 0.45 20.16 7.47 87.66 0.66 20.81 16 19 O -0.61 -33.98 13.91 -3.07 -0.04 -34.02 16 20 N -0.59 -27.63 5.09 -306.99 -1.56 -29.20 16 21 C -0.33 -19.31 10.16 84.04 0.85 -18.46 16 22 H 0.05 3.74 7.39 -2.91 -0.02 3.71 16 23 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 24 N -0.94 -56.78 13.96 21.66 0.30 -56.48 16 25 Si 0.97 38.34 27.74 68.60 1.90 40.25 16 26 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 27 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 28 H -0.23 -7.47 6.52 99.48 0.65 -6.83 16 29 O -0.39 -5.71 10.32 -148.98 -1.54 -7.24 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 33 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.09 0.52 8.06 -2.39 -0.02 0.50 16 35 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.07 0.76 7.85 -2.39 -0.02 0.74 16 37 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 38 H 0.07 1.19 8.10 -2.39 -0.02 1.17 16 39 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.11 1.23 7.88 -2.39 -0.02 1.21 16 41 H 0.42 3.54 8.47 -92.71 -0.79 2.76 16 42 H 0.05 1.35 6.55 -2.39 -0.02 1.34 16 43 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 44 H 0.10 1.52 7.93 -2.39 -0.02 1.50 16 45 H 0.06 0.94 8.12 -2.38 -0.02 0.92 16 46 H 0.07 2.05 6.47 -2.39 -0.02 2.04 16 47 H 0.05 2.18 5.83 -2.39 -0.01 2.17 16 48 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.13 2.86 7.93 -2.39 -0.02 2.84 16 50 H 0.08 1.97 8.12 -2.39 -0.02 1.95 16 51 H 0.39 14.83 5.76 -92.71 -0.53 14.30 16 52 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -86.05 416.13 -1.36 -87.41 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: -0.46 Total: 34.01 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: 6.83 Total: 18.25 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -8.00 Total: -120.17 kcal Atomic # 8 Polarization: -58.12 SS G_CDS: -1.63 Total: -59.75 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 1.90 Total: 40.25 kcal Total: -86.05 -1.36 -87.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713476543.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.753 kcal (2) G-P(sol) polarization free energy of solvation -86.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds