Wall clock time and date at job start Wed Apr 1 2020 00:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 110.33783 * 2 1 4 4 C 1.54476 * 110.37382 * 122.25463 * 2 1 3 5 5 C 1.54514 * 104.06619 * 142.80623 * 4 2 1 6 6 C 1.54477 * 104.05979 * 0.02562 * 5 4 2 7 7 H 1.09001 * 110.37261 * 94.96098 * 6 5 4 8 8 C 1.52996 * 110.36975 * 217.18770 * 6 5 4 9 9 C 1.53005 * 109.47245 * 184.99882 * 8 6 5 10 10 C 1.50696 * 109.47353 * 179.97438 * 9 8 6 11 11 O 1.21284 * 120.00096 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99838 * 180.02562 * 10 9 8 13 13 C 1.46506 * 120.00072 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47289 * 180.02562 * 13 12 10 15 15 N 1.46896 * 109.47306 * 180.02562 * 14 13 12 16 16 C 1.46904 * 111.00237 * 66.04123 * 15 14 13 17 17 C 1.46892 * 111.00374 * 189.99883 * 15 14 13 18 18 C 1.50703 * 109.47478 * 169.99532 * 17 15 14 19 19 O 1.21296 * 119.99571 * 0.02562 * 18 17 15 20 20 N 1.34772 * 120.00154 * 179.97438 * 18 17 15 21 21 C 1.37102 * 120.00218 * 180.02562 * 20 18 17 22 22 H 1.08005 * 119.99765 * 359.97438 * 21 20 18 23 23 C 1.38951 * 120.00184 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99939 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99753 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47321 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47011 * 120.00268 * 25 23 21 28 28 H 1.48504 * 109.46991 * 239.99947 * 25 23 21 29 29 O 1.44422 * 104.80514 * 336.02259 * 6 5 4 30 30 H 1.09001 * 109.46979 * 297.74765 * 1 2 3 31 31 H 1.09000 * 109.47013 * 57.74535 * 1 2 3 32 32 H 1.08997 * 109.47651 * 177.75006 * 1 2 3 33 33 H 1.09001 * 110.50916 * 24.16204 * 4 2 1 34 34 H 1.08996 * 110.51558 * 261.45332 * 4 2 1 35 35 H 1.09004 * 110.51046 * 241.35734 * 5 4 2 36 36 H 1.08996 * 110.62643 * 118.70317 * 5 4 2 37 37 H 1.08996 * 109.47261 * 65.00454 * 8 6 5 38 38 H 1.08992 * 109.47554 * 304.99920 * 8 6 5 39 39 H 1.09004 * 109.46832 * 60.00120 * 9 8 6 40 40 H 1.09001 * 109.47420 * 300.00558 * 9 8 6 41 41 H 0.97001 * 120.00676 * 359.97438 * 12 10 9 42 42 H 1.09001 * 109.47060 * 300.00359 * 13 12 10 43 43 H 1.09004 * 109.47073 * 59.99848 * 13 12 10 44 44 H 1.09001 * 109.46832 * 299.99854 * 14 13 12 45 45 H 1.08996 * 109.46952 * 59.99873 * 14 13 12 46 46 H 1.09001 * 109.46714 * 60.00429 * 16 15 14 47 47 H 1.09000 * 109.47284 * 180.02562 * 16 15 14 48 48 H 1.09001 * 109.47019 * 300.00513 * 16 15 14 49 49 H 1.09001 * 109.47381 * 289.99936 * 17 15 14 50 50 H 1.09005 * 109.46900 * 49.99887 * 17 15 14 51 51 H 0.97001 * 120.00374 * 0.02562 * 20 18 17 52 52 H 0.96998 * 119.99598 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0677 -0.7728 1.2247 5 6 3.3177 -1.5051 0.6873 6 6 3.3876 -1.0875 -0.7983 7 1 4.0545 -0.2341 -0.9216 8 6 3.8604 -2.2604 -1.6595 9 6 4.0417 -1.7915 -3.1046 10 6 4.5079 -2.9466 -3.9528 11 8 4.6780 -4.0376 -3.4510 12 7 4.7359 -2.7673 -5.2689 13 6 5.1887 -3.8903 -6.0937 14 6 5.3713 -3.4211 -7.5384 15 7 5.8247 -4.5473 -8.3654 16 6 4.7855 -5.5811 -8.4624 17 6 6.2372 -4.0889 -9.6986 18 6 6.9204 -5.2166 -10.4285 19 8 7.0504 -6.2961 -9.8910 20 7 7.3861 -5.0258 -11.6788 21 6 8.0072 -6.0518 -12.3430 22 1 8.1236 -7.0129 -11.8641 23 6 8.4877 -5.8550 -13.6318 24 7 8.3464 -4.6855 -14.2143 25 14 9.3346 -7.2529 -14.5364 26 1 9.3658 -8.4572 -13.6684 27 1 8.5875 -7.5605 -15.7824 28 1 10.7231 -6.8521 -14.8780 29 8 2.0332 -0.7240 -1.1436 30 1 -0.3633 0.4785 0.9095 31 1 -0.3633 0.5484 -0.8691 32 1 -0.3634 -1.0268 -0.0403 33 1 1.3275 -1.4904 1.5786 34 1 2.3429 -0.0820 2.0216 35 1 3.1954 -2.5847 0.7756 36 1 4.2119 -1.1783 1.2180 37 1 3.1179 -3.0577 -1.6268 38 1 4.8104 -2.6327 -1.2765 39 1 4.7843 -0.9942 -3.1374 40 1 3.0916 -1.4191 -3.4878 41 1 4.5996 -1.8948 -5.6704 42 1 6.1385 -4.2630 -5.7102 43 1 4.4459 -4.6875 -6.0613 44 1 4.4217 -3.0482 -7.9221 45 1 6.1142 -2.6242 -7.5704 46 1 3.8897 -5.1545 -8.9137 47 1 5.1474 -6.4033 -9.0798 48 1 4.5485 -5.9527 -7.4655 49 1 5.3595 -3.7709 -10.2613 50 1 6.9271 -3.2510 -9.5974 51 1 7.2818 -4.1626 -12.1088 52 1 8.6822 -4.5481 -15.1138 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713476544.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:58 Heat of formation + Delta-G solvation = -153.556207 kcal Electronic energy + Delta-G solvation = -28653.140902 eV Core-core repulsion = 24458.094035 eV Total energy + Delta-G solvation = -4195.046866 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.97009 -40.44396 -40.22827 -38.19547 -36.02127 -35.48610 -34.89188 -33.27029 -33.13859 -31.82192 -30.56409 -29.12260 -27.57198 -26.86461 -25.30809 -23.82834 -22.35320 -22.24389 -21.70244 -21.24638 -20.93523 -19.84756 -18.17304 -17.66896 -17.49133 -17.22878 -17.11835 -16.77216 -16.55443 -16.29775 -15.95869 -15.86571 -15.64921 -15.20754 -15.01620 -14.68102 -14.66253 -14.36933 -14.06097 -13.88813 -13.77795 -13.45506 -13.35439 -13.07927 -13.03434 -12.91497 -12.62361 -12.57588 -12.55783 -12.51032 -12.38877 -12.14965 -12.08929 -12.05374 -11.79676 -11.64463 -11.48351 -11.45843 -10.91580 -10.64153 -10.28562 -10.09880 -9.98384 -9.24410 -8.45733 -5.93831 1.36888 1.42344 1.56214 1.65870 2.04062 2.07201 2.31404 2.90080 2.92014 3.21505 3.42784 3.64146 3.72024 3.82155 3.90405 3.99046 4.04682 4.06529 4.17660 4.25856 4.34044 4.36382 4.44109 4.46751 4.51501 4.53356 4.58419 4.63298 4.63930 4.68440 4.74407 4.82739 4.88632 4.95176 4.97096 4.98343 5.11734 5.18137 5.20162 5.21131 5.27054 5.32060 5.41889 5.43001 5.85557 6.03446 6.05037 6.16790 6.56934 6.62693 7.15033 7.28188 7.58485 8.15015 8.71879 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.040909 B = 0.001298 C = 0.001284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.273495 B =21573.453623 C =21800.462888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.062 3.938 3 H 0.078 0.922 4 C -0.149 4.149 5 C -0.155 4.155 6 C 0.076 3.924 7 H 0.087 0.913 8 C -0.095 4.095 9 C -0.127 4.127 10 C 0.507 3.493 11 O -0.591 6.591 12 N -0.716 5.716 13 C 0.129 3.871 14 C 0.053 3.947 15 N -0.540 5.540 16 C 0.025 3.975 17 C 0.061 3.939 18 C 0.439 3.561 19 O -0.617 6.617 20 N -0.573 5.573 21 C -0.332 4.332 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.275 1.275 27 H -0.271 1.271 28 H -0.271 1.271 29 O -0.391 6.391 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.122 0.878 40 H 0.110 0.890 41 H 0.418 0.582 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.061 0.939 45 H 0.100 0.900 46 H 0.035 0.965 47 H 0.056 0.944 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.116 0.884 51 H 0.397 0.603 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.075 18.053 27.131 35.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.005 3.995 3 H 0.096 0.904 4 C -0.187 4.187 5 C -0.192 4.192 6 C 0.019 3.981 7 H 0.105 0.895 8 C -0.133 4.133 9 C -0.166 4.166 10 C 0.295 3.705 11 O -0.471 6.471 12 N -0.369 5.369 13 C 0.004 3.996 14 C -0.075 4.075 15 N -0.265 5.265 16 C -0.123 4.123 17 C -0.070 4.070 18 C 0.226 3.774 19 O -0.503 6.503 20 N -0.211 5.211 21 C -0.462 4.462 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.200 1.200 27 H -0.196 1.196 28 H -0.196 1.196 29 O -0.311 6.311 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.140 0.860 40 H 0.128 0.872 41 H 0.256 0.744 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.118 0.882 46 H 0.053 0.947 47 H 0.075 0.925 48 H 0.090 0.910 49 H 0.091 0.909 50 H 0.134 0.866 51 H 0.231 0.769 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.519 16.374 27.667 34.876 hybrid contribution -0.171 0.053 -1.358 1.369 sum -13.690 16.427 26.310 33.904 Atomic orbital electron populations 1.21823 0.92913 1.02493 1.03154 1.23142 0.95727 0.95767 0.84877 0.90365 1.23010 0.97363 0.99927 0.98414 1.23009 0.99476 1.01357 0.95392 1.23074 0.84533 0.96824 0.93709 0.89482 1.21352 1.01804 0.96779 0.93390 1.21648 1.04671 0.95975 0.94348 1.21393 0.76065 0.90498 0.82521 1.90707 1.53761 1.29110 1.73558 1.45821 1.68378 1.14215 1.08518 1.21070 0.99381 0.89136 0.90019 1.22249 1.01065 0.92945 0.91198 1.61328 1.40339 1.11996 1.12838 1.22458 0.91941 0.95733 1.02182 1.21736 1.00336 0.95663 0.89283 1.20842 0.83695 0.90466 0.82361 1.90478 1.62541 1.29152 1.68109 1.41916 1.51869 1.14057 1.13271 1.19683 1.34778 0.93944 0.97762 0.90500 1.25981 0.98041 1.00040 0.97016 1.69670 1.47114 1.23613 1.15702 0.84905 0.78073 0.77712 0.77854 1.19974 1.19610 1.19607 1.89127 1.27728 1.74879 1.39391 0.89477 0.92162 0.92812 0.90889 0.88937 0.91446 0.88996 0.92742 0.90245 0.85977 0.87201 0.74438 0.92801 0.92825 0.92130 0.88186 0.94661 0.92508 0.91023 0.90930 0.86644 0.76935 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.52 71.98 0.69 -0.65 16 2 C 0.06 0.65 3.92 31.09 0.12 0.77 16 3 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 4 C -0.15 -1.28 6.63 31.61 0.21 -1.07 16 5 C -0.15 -1.57 6.63 31.61 0.21 -1.36 16 6 C 0.08 0.91 3.25 31.10 0.10 1.01 16 7 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 8 C -0.10 -1.48 4.13 30.59 0.13 -1.35 16 9 C -0.13 -1.66 5.64 29.85 0.17 -1.50 16 10 C 0.51 10.75 7.83 87.66 0.69 11.44 16 11 O -0.59 -18.61 15.98 -3.04 -0.05 -18.66 16 12 N -0.72 -12.46 5.56 -463.05 -2.57 -15.03 16 13 C 0.13 3.02 5.60 86.38 0.48 3.51 16 14 C 0.05 1.14 5.07 86.30 0.44 1.58 16 15 N -0.54 -17.14 4.50 -927.06 -4.17 -21.32 16 16 C 0.02 0.81 8.96 127.69 1.14 1.96 16 17 C 0.06 2.02 5.45 85.56 0.47 2.49 16 18 C 0.44 20.84 7.48 87.66 0.66 21.49 16 19 O -0.62 -34.43 13.91 -3.08 -0.04 -34.47 16 20 N -0.57 -29.26 5.29 -306.98 -1.62 -30.89 16 21 C -0.33 -18.92 9.68 84.04 0.81 -18.10 16 22 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 23 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 24 N -0.92 -49.36 13.05 21.66 0.28 -49.08 16 25 Si 0.99 43.14 29.55 68.60 2.03 45.17 16 26 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 28 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 29 O -0.39 -6.02 10.82 -148.98 -1.61 -7.63 16 30 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.67 7.87 -2.39 -0.02 0.65 16 34 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.07 0.83 7.87 -2.39 -0.02 0.81 16 36 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 38 H 0.08 1.29 8.10 -2.39 -0.02 1.27 16 39 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.11 1.27 8.01 -2.39 -0.02 1.25 16 41 H 0.42 4.08 8.47 -92.71 -0.79 3.29 16 42 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.05 1.44 6.55 -2.38 -0.02 1.42 16 44 H 0.06 1.06 8.12 -2.39 -0.02 1.04 16 45 H 0.10 1.76 7.93 -2.39 -0.02 1.74 16 46 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.06 2.35 5.82 -2.39 -0.01 2.33 16 48 H 0.07 2.17 6.47 -2.39 -0.02 2.16 16 49 H 0.07 2.10 8.12 -2.39 -0.02 2.08 16 50 H 0.12 3.25 7.93 -2.38 -0.02 3.23 16 51 H 0.40 19.04 7.90 -92.71 -0.73 18.31 16 52 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -77.00 419.42 -1.58 -78.59 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: -0.60 Total: 33.23 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 6.78 Total: 20.08 kcal Atomic # 7 Polarization: -108.22 SS G_CDS: -8.08 Total: -116.31 kcal Atomic # 8 Polarization: -59.06 SS G_CDS: -1.70 Total: -60.76 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -77.00 -1.58 -78.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713476544.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.967 kcal (2) G-P(sol) polarization free energy of solvation -77.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds