Wall clock time and date at job start Wed Apr 1 2020 00:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46978 * 2 1 4 4 O 1.42897 * 109.47002 * 119.99638 * 2 1 3 5 5 C 1.42903 * 113.99807 * 149.99951 * 4 2 1 6 6 C 1.50702 * 109.47112 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99861 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00046 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99846 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46823 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.46970 * 179.97438 * 10 9 8 12 12 H 1.08996 * 110.35715 * 307.14949 * 11 10 9 13 13 C 1.54597 * 110.30558 * 69.29148 * 11 10 9 14 14 C 1.54940 * 102.92214 * 140.86956 * 13 11 10 15 15 N 1.48527 * 103.22612 * 322.58629 * 14 13 11 16 16 C 1.46902 * 110.99964 * 159.71987 * 15 14 13 17 17 C 1.50702 * 109.47027 * 52.60122 * 16 15 14 18 18 O 1.21293 * 120.00255 * 0.02562 * 17 16 15 19 19 N 1.34783 * 120.00004 * 180.02562 * 17 16 15 20 20 C 1.37092 * 119.99804 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00499 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99671 * 179.72159 * 20 19 17 23 23 N 1.31414 * 120.00152 * 0.27554 * 22 20 19 24 24 Si 1.86803 * 119.99914 * 180.27723 * 22 20 19 25 25 H 1.48498 * 109.47174 * 90.00084 * 24 22 20 26 26 H 1.48501 * 109.47062 * 210.00035 * 24 22 20 27 27 H 1.48504 * 109.46913 * 329.99834 * 24 22 20 28 28 C 1.47896 * 105.82134 * 39.20939 * 15 14 13 29 29 H 1.09000 * 109.47393 * 300.00303 * 1 2 3 30 30 H 1.09004 * 109.47352 * 60.00213 * 1 2 3 31 31 H 1.09005 * 109.47151 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47263 * 240.00230 * 2 1 3 33 33 H 1.09000 * 109.47305 * 59.99643 * 3 2 1 34 34 H 1.09004 * 109.47216 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47335 * 299.99784 * 3 2 1 36 36 H 1.08997 * 109.47127 * 60.00442 * 5 4 2 37 37 H 1.09003 * 109.47567 * 300.00191 * 5 4 2 38 38 H 0.97001 * 119.99823 * 0.02562 * 8 6 5 39 39 H 1.09002 * 109.47179 * 60.00623 * 9 8 6 40 40 H 1.08992 * 109.47582 * 300.00171 * 9 8 6 41 41 H 1.09002 * 109.46473 * 60.00511 * 10 9 8 42 42 H 1.08992 * 109.47443 * 300.00576 * 10 9 8 43 43 H 1.09001 * 110.72499 * 259.22821 * 13 11 10 44 44 H 1.09008 * 110.72586 * 22.33599 * 13 11 10 45 45 H 1.09002 * 110.66618 * 204.14629 * 14 13 11 46 46 H 1.09002 * 110.66469 * 81.02379 * 14 13 11 47 47 H 1.09004 * 109.47131 * 292.60366 * 16 15 14 48 48 H 1.08994 * 109.47471 * 172.60116 * 16 15 14 49 49 H 0.97000 * 119.99715 * 359.97438 * 19 17 16 50 50 H 0.96991 * 119.99827 * 179.97438 * 23 22 20 51 51 H 1.09003 * 109.92297 * 94.01998 * 28 15 14 52 52 H 1.09008 * 109.91662 * 215.11899 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2659 -1.3244 0.9886 6 6 3.6699 -1.9977 2.2750 7 8 2.9497 -1.9275 3.2483 8 7 4.8309 -2.6787 2.3435 9 6 5.2238 -3.3327 3.5941 10 6 6.5718 -4.0307 3.4030 11 6 6.9825 -4.7132 4.7093 12 1 6.9508 -4.0022 5.5348 13 6 6.0555 -5.9156 5.0008 14 6 7.0322 -6.9768 5.5670 15 7 8.2587 -6.7783 4.7532 16 6 9.4362 -7.3374 5.4306 17 6 9.1634 -8.7697 5.8118 18 8 8.0936 -9.2751 5.5451 19 7 10.1083 -9.4890 6.4493 20 6 9.8603 -10.7921 6.7957 21 1 8.9080 -11.2424 6.5574 22 6 10.8366 -11.5355 7.4477 23 7 11.9956 -10.9878 7.7371 24 14 10.5016 -13.3134 7.9128 25 1 10.9195 -14.2033 6.7999 26 1 11.2686 -13.6578 9.1368 27 1 9.0502 -13.4923 8.1714 28 6 8.3934 -5.3160 4.5769 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 4.0199 -0.5873 0.7125 37 1 3.1809 -2.0707 0.1987 38 1 5.4067 -2.7352 1.5649 39 1 4.4698 -4.0694 3.8714 40 1 5.3096 -2.5859 4.3833 41 1 7.3261 -3.2944 3.1255 42 1 6.4856 -4.7776 2.6138 43 1 5.3017 -5.6506 5.7423 44 1 5.5847 -6.2709 4.0841 45 1 6.6340 -7.9813 5.4240 46 1 7.2354 -6.7890 6.6213 47 1 9.6489 -6.7567 6.3282 48 1 10.2945 -7.2971 4.7600 49 1 10.9641 -9.0849 6.6623 50 1 12.6769 -11.5066 8.1926 51 1 9.0456 -4.9074 5.3487 52 1 8.8028 -5.0970 3.5907 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713725591.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:14 Heat of formation + Delta-G solvation = -122.722849 kcal Electronic energy + Delta-G solvation = -28799.960958 eV Core-core repulsion = 24606.251126 eV Total energy + Delta-G solvation = -4193.709832 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.16638 -39.35538 -38.45310 -37.68428 -35.58762 -34.00117 -33.29112 -32.94898 -31.29173 -30.15509 -28.82878 -27.81069 -27.43749 -26.04816 -24.13670 -22.84334 -21.81413 -21.17940 -20.97190 -19.89139 -19.21887 -17.87375 -17.57074 -17.48587 -16.53545 -16.15244 -15.96994 -15.65487 -15.29152 -15.02165 -14.97861 -14.48965 -14.31109 -14.14641 -13.87341 -13.77839 -13.45734 -13.33647 -13.06120 -12.72678 -12.66531 -12.54575 -12.45717 -12.30425 -12.08852 -11.90754 -11.69930 -11.53423 -11.35640 -11.23061 -11.15933 -10.91802 -10.84318 -10.67991 -10.46199 -10.33815 -10.22510 -10.15722 -10.04325 -9.48955 -9.38448 -8.34926 -8.00771 -7.87856 -6.42673 -3.83451 2.30043 2.42426 3.17359 3.26170 3.31911 3.52354 3.89206 4.09942 4.26584 4.33163 4.43620 4.47188 4.51693 4.61605 4.67077 4.68465 4.74410 4.74723 4.98501 5.10915 5.13640 5.17333 5.21744 5.24704 5.29783 5.35892 5.41668 5.47796 5.53010 5.65607 5.68913 5.71915 5.73661 5.78514 5.84880 5.96102 5.99026 6.07917 6.10279 6.17973 6.27839 6.39434 6.63286 6.73745 7.14414 7.28028 7.34734 7.54584 7.90340 8.05382 8.60929 9.17187 9.53055 10.04898 10.75055 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.040321 B = 0.001344 C = 0.001321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.254091 B =20825.865907 C =21193.049516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.177 4.177 4 O -0.358 6.358 5 C 0.044 3.956 6 C 0.511 3.489 7 O -0.518 6.518 8 N -0.730 5.730 9 C 0.120 3.880 10 C -0.119 4.119 11 C -0.095 4.095 12 H 0.075 0.925 13 C -0.123 4.123 14 C 0.038 3.962 15 N -0.496 5.496 16 C 0.036 3.964 17 C 0.442 3.558 18 O -0.581 6.581 19 N -0.562 5.562 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.038 3.962 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.401 0.599 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.117 0.883 46 H 0.034 0.966 47 H 0.048 0.952 48 H 0.089 0.911 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.042 0.958 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.620 23.965 -15.719 31.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.021 3.979 3 C -0.234 4.234 4 O -0.276 6.276 5 C -0.036 4.036 6 C 0.296 3.704 7 O -0.392 6.392 8 N -0.384 5.384 9 C -0.003 4.003 10 C -0.157 4.157 11 C -0.114 4.114 12 H 0.094 0.906 13 C -0.162 4.162 14 C -0.090 4.090 15 N -0.220 5.220 16 C -0.095 4.095 17 C 0.227 3.773 18 O -0.465 6.465 19 N -0.198 5.198 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.090 4.090 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.235 0.765 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.135 0.865 46 H 0.053 0.947 47 H 0.066 0.934 48 H 0.107 0.893 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.060 0.940 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.844 23.319 -15.387 31.180 hybrid contribution 1.287 -0.185 0.569 1.419 sum -12.557 23.134 -14.818 30.207 Atomic orbital electron populations 1.21859 0.93179 1.03014 1.02698 1.22186 0.95454 0.92476 0.87772 1.22320 1.01475 0.96722 1.02894 1.88078 1.34524 1.69696 1.35310 1.22231 0.88362 0.97166 0.95854 1.20262 0.81275 0.79093 0.89803 1.90752 1.51571 1.59302 1.37599 1.45920 1.22192 1.54679 1.15588 1.21451 0.96749 0.96581 0.85558 1.21859 0.95380 0.99731 0.98697 1.21925 0.95414 0.97274 0.96802 0.90641 1.22697 0.97408 0.94638 1.01418 1.23471 0.89678 1.01658 0.94145 1.64605 1.02393 1.09799 1.45232 1.22096 0.94419 0.95439 0.97595 1.19733 0.85993 0.87617 0.83919 1.90437 1.25126 1.72030 1.58933 1.41853 1.15161 1.12094 1.50708 1.19710 1.01814 0.86973 1.34419 0.87881 1.25262 0.94977 1.00406 0.97223 1.69611 1.05254 1.37811 1.41610 0.85860 0.78617 0.81913 0.77914 1.20384 1.20936 1.19410 1.22983 0.95766 0.88917 1.01355 0.91541 0.91083 0.91802 0.91994 0.91519 0.92509 0.91445 0.90382 0.90210 0.76541 0.90968 0.91457 0.91315 0.90498 0.91439 0.90774 0.86495 0.94743 0.93431 0.89329 0.77467 0.91863 0.94005 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.56 37.16 0.36 -0.49 16 2 C 0.08 0.48 3.34 -26.73 -0.09 0.40 16 3 C -0.18 -0.90 9.53 37.16 0.35 -0.54 16 4 O -0.36 -3.43 9.52 -55.14 -0.52 -3.95 16 5 C 0.04 0.30 6.23 36.01 0.22 0.53 16 6 C 0.51 5.16 7.91 -10.98 -0.09 5.07 16 7 O -0.52 -7.88 16.50 -14.35 -0.24 -8.11 16 8 N -0.73 -5.46 5.56 -60.30 -0.33 -5.80 16 9 C 0.12 1.05 5.54 -4.04 -0.02 1.03 16 10 C -0.12 -0.94 4.49 -26.73 -0.12 -1.06 16 11 C -0.09 -0.99 3.00 -89.26 -0.27 -1.25 16 12 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 13 C -0.12 -1.56 5.87 -24.87 -0.15 -1.70 16 14 C 0.04 0.63 5.30 -1.90 -0.01 0.62 16 15 N -0.50 -8.25 5.26 -231.89 -1.22 -9.47 16 16 C 0.04 0.65 5.52 -4.97 -0.03 0.63 16 17 C 0.44 10.39 7.49 -10.98 -0.08 10.31 16 18 O -0.58 -15.34 13.10 5.55 0.07 -15.27 16 19 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 20 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.61 5.50 -17.46 -0.10 0.52 16 23 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 24 Si 0.93 21.01 29.55 -169.99 -5.02 15.98 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 C 0.04 0.47 6.35 -2.76 -0.02 0.45 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.27 7.79 -51.93 -0.40 -0.13 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.26 7.87 -51.93 -0.41 -0.15 16 35 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.08 0.34 7.87 -51.93 -0.41 -0.07 16 37 H 0.08 0.36 8.09 -51.93 -0.42 -0.06 16 38 H 0.40 1.70 8.47 -40.82 -0.35 1.36 16 39 H 0.07 0.75 7.58 -51.93 -0.39 0.36 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.64 8.00 -51.93 -0.42 0.22 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.93 7.76 -51.92 -0.40 0.53 16 45 H 0.12 2.38 5.97 -51.93 -0.31 2.07 16 46 H 0.03 0.60 8.02 -51.93 -0.42 0.18 16 47 H 0.05 0.79 7.81 -51.93 -0.41 0.39 16 48 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 49 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 50 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 51 H 0.04 0.50 7.57 -51.93 -0.39 0.10 16 52 H 0.08 0.85 7.69 -51.92 -0.40 0.45 16 LS Contribution 419.72 15.07 6.33 6.33 Total: -1.00 -34.75 419.72 -9.64 -44.39 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -9.18 Total: 7.91 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -0.18 Total: 6.03 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.89 Total: -53.29 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.69 Total: -27.34 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -34.75 -9.64 -44.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713725591.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.336 kcal (2) G-P(sol) polarization free energy of solvation -34.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds