Wall clock time and date at job start Wed Apr 1 2020 00:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46978 * 2 1 4 4 O 1.42897 * 109.47002 * 119.99638 * 2 1 3 5 5 C 1.42903 * 113.99807 * 149.99951 * 4 2 1 6 6 C 1.50702 * 109.47112 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99861 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00046 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99846 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46823 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.46970 * 179.97438 * 10 9 8 12 12 H 1.08996 * 110.35715 * 307.14949 * 11 10 9 13 13 C 1.54597 * 110.30558 * 69.29148 * 11 10 9 14 14 C 1.54940 * 102.92214 * 140.86956 * 13 11 10 15 15 N 1.48527 * 103.22612 * 322.58629 * 14 13 11 16 16 C 1.46902 * 110.99964 * 159.71987 * 15 14 13 17 17 C 1.50702 * 109.47027 * 52.60122 * 16 15 14 18 18 O 1.21293 * 120.00255 * 0.02562 * 17 16 15 19 19 N 1.34783 * 120.00004 * 180.02562 * 17 16 15 20 20 C 1.37092 * 119.99804 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00499 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99671 * 179.72159 * 20 19 17 23 23 N 1.31414 * 120.00152 * 0.27554 * 22 20 19 24 24 Si 1.86803 * 119.99914 * 180.27723 * 22 20 19 25 25 H 1.48498 * 109.47174 * 90.00084 * 24 22 20 26 26 H 1.48501 * 109.47062 * 210.00035 * 24 22 20 27 27 H 1.48504 * 109.46913 * 329.99834 * 24 22 20 28 28 C 1.47896 * 105.82134 * 39.20939 * 15 14 13 29 29 H 1.09000 * 109.47393 * 300.00303 * 1 2 3 30 30 H 1.09004 * 109.47352 * 60.00213 * 1 2 3 31 31 H 1.09005 * 109.47151 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47263 * 240.00230 * 2 1 3 33 33 H 1.09000 * 109.47305 * 59.99643 * 3 2 1 34 34 H 1.09004 * 109.47216 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47335 * 299.99784 * 3 2 1 36 36 H 1.08997 * 109.47127 * 60.00442 * 5 4 2 37 37 H 1.09003 * 109.47567 * 300.00191 * 5 4 2 38 38 H 0.97001 * 119.99823 * 0.02562 * 8 6 5 39 39 H 1.09002 * 109.47179 * 60.00623 * 9 8 6 40 40 H 1.08992 * 109.47582 * 300.00171 * 9 8 6 41 41 H 1.09002 * 109.46473 * 60.00511 * 10 9 8 42 42 H 1.08992 * 109.47443 * 300.00576 * 10 9 8 43 43 H 1.09001 * 110.72499 * 259.22821 * 13 11 10 44 44 H 1.09008 * 110.72586 * 22.33599 * 13 11 10 45 45 H 1.09002 * 110.66618 * 204.14629 * 14 13 11 46 46 H 1.09002 * 110.66469 * 81.02379 * 14 13 11 47 47 H 1.09004 * 109.47131 * 292.60366 * 16 15 14 48 48 H 1.08994 * 109.47471 * 172.60116 * 16 15 14 49 49 H 0.97000 * 119.99715 * 359.97438 * 19 17 16 50 50 H 0.96991 * 119.99827 * 179.97438 * 23 22 20 51 51 H 1.09003 * 109.92297 * 94.01998 * 28 15 14 52 52 H 1.09008 * 109.91662 * 215.11899 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2659 -1.3244 0.9886 6 6 3.6699 -1.9977 2.2750 7 8 2.9497 -1.9275 3.2483 8 7 4.8309 -2.6787 2.3435 9 6 5.2238 -3.3327 3.5941 10 6 6.5718 -4.0307 3.4030 11 6 6.9825 -4.7132 4.7093 12 1 6.9508 -4.0022 5.5348 13 6 6.0555 -5.9156 5.0008 14 6 7.0322 -6.9768 5.5670 15 7 8.2587 -6.7783 4.7532 16 6 9.4362 -7.3374 5.4306 17 6 9.1634 -8.7697 5.8118 18 8 8.0936 -9.2751 5.5451 19 7 10.1083 -9.4890 6.4493 20 6 9.8603 -10.7921 6.7957 21 1 8.9080 -11.2424 6.5574 22 6 10.8366 -11.5355 7.4477 23 7 11.9956 -10.9878 7.7371 24 14 10.5016 -13.3134 7.9128 25 1 10.9195 -14.2033 6.7999 26 1 11.2686 -13.6578 9.1368 27 1 9.0502 -13.4923 8.1714 28 6 8.3934 -5.3160 4.5769 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 4.0199 -0.5873 0.7125 37 1 3.1809 -2.0707 0.1987 38 1 5.4067 -2.7352 1.5649 39 1 4.4698 -4.0694 3.8714 40 1 5.3096 -2.5859 4.3833 41 1 7.3261 -3.2944 3.1255 42 1 6.4856 -4.7776 2.6138 43 1 5.3017 -5.6506 5.7423 44 1 5.5847 -6.2709 4.0841 45 1 6.6340 -7.9813 5.4240 46 1 7.2354 -6.7890 6.6213 47 1 9.6489 -6.7567 6.3282 48 1 10.2945 -7.2971 4.7600 49 1 10.9641 -9.0849 6.6623 50 1 12.6769 -11.5066 8.1926 51 1 9.0456 -4.9074 5.3487 52 1 8.8028 -5.0970 3.5907 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713725591.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:13 Heat of formation + Delta-G solvation = -149.154982 kcal Electronic energy + Delta-G solvation = -28801.107141 eV Core-core repulsion = 24606.251126 eV Total energy + Delta-G solvation = -4194.856015 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.96571 -40.68156 -39.34572 -38.93454 -36.53980 -35.90746 -34.13372 -33.67142 -33.28065 -31.23656 -29.72244 -28.68605 -28.07489 -27.32807 -25.82108 -23.64693 -22.38647 -22.23830 -21.81325 -21.05453 -20.75890 -19.86965 -18.24567 -18.05346 -17.73376 -17.14827 -17.04151 -16.70311 -16.40848 -16.24818 -16.02594 -15.69528 -15.62241 -15.51630 -14.95704 -14.74637 -14.52222 -14.19284 -13.97897 -13.78173 -13.55031 -13.50007 -13.35839 -13.19227 -13.05828 -12.92546 -12.88167 -12.80169 -12.43308 -12.35777 -12.29134 -12.27473 -12.12512 -11.80320 -11.64878 -11.61888 -11.50960 -11.39222 -10.85701 -10.63663 -10.15172 -10.10998 -10.00537 -9.27702 -8.47446 -5.96017 1.37199 1.41129 1.53708 1.57058 1.84303 2.03650 2.28361 2.90739 3.02502 3.19685 3.35893 3.65840 3.73069 3.81491 3.91555 4.02428 4.10519 4.21576 4.25549 4.26664 4.29820 4.30553 4.34740 4.40276 4.44753 4.54951 4.65093 4.68219 4.75586 4.76370 4.82894 4.84230 4.91910 4.94590 5.00956 5.05903 5.12124 5.24564 5.29557 5.33539 5.34431 5.40421 5.43205 5.43497 5.89171 6.00916 6.17255 6.17799 6.57692 6.60240 7.12391 7.24421 7.54887 8.11144 8.70058 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.040321 B = 0.001344 C = 0.001321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.254091 B =20825.865907 C =21193.049516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.072 3.928 3 C -0.174 4.174 4 O -0.396 6.396 5 C 0.045 3.955 6 C 0.504 3.496 7 O -0.580 6.580 8 N -0.713 5.713 9 C 0.122 3.878 10 C -0.104 4.104 11 C -0.087 4.087 12 H 0.087 0.913 13 C -0.115 4.115 14 C 0.037 3.963 15 N -0.513 5.513 16 C 0.048 3.952 17 C 0.437 3.563 18 O -0.614 6.614 19 N -0.572 5.572 20 C -0.334 4.334 21 H 0.079 0.921 22 C -0.011 4.011 23 N -0.920 5.920 24 Si 0.992 3.008 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.274 1.274 28 C 0.038 3.962 29 H 0.050 0.950 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.420 0.580 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.022 0.978 47 H 0.066 0.934 48 H 0.110 0.890 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.052 0.948 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.496 25.579 -17.620 33.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.016 3.984 3 C -0.232 4.232 4 O -0.316 6.316 5 C -0.034 4.034 6 C 0.291 3.709 7 O -0.459 6.459 8 N -0.367 5.367 9 C -0.002 4.002 10 C -0.142 4.142 11 C -0.106 4.106 12 H 0.105 0.895 13 C -0.153 4.153 14 C -0.091 4.091 15 N -0.237 5.237 16 C -0.084 4.084 17 C 0.225 3.775 18 O -0.501 6.501 19 N -0.209 5.209 20 C -0.463 4.463 21 H 0.097 0.903 22 C -0.211 4.211 23 N -0.561 5.561 24 Si 0.816 3.184 25 H -0.196 1.196 26 H -0.195 1.195 27 H -0.199 1.199 28 C -0.090 4.090 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.257 0.743 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.040 0.960 47 H 0.084 0.916 48 H 0.128 0.872 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.071 0.929 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.668 24.954 -17.333 32.918 hybrid contribution 0.912 -0.665 1.128 1.596 sum -11.756 24.288 -16.205 31.476 Atomic orbital electron populations 1.21904 0.93415 1.02576 1.03010 1.22399 0.95431 0.93010 0.87597 1.22307 1.01864 0.96076 1.02913 1.88042 1.35801 1.70392 1.37370 1.22389 0.88321 0.98345 0.94376 1.20971 0.81032 0.78609 0.90258 1.90724 1.53538 1.61734 1.39909 1.45776 1.21735 1.53332 1.15881 1.21325 0.96750 0.96032 0.86056 1.21732 0.95274 1.00011 0.97183 1.21896 0.93612 0.96416 0.98706 0.89479 1.22619 0.97051 0.94380 1.01276 1.23271 0.91170 1.00750 0.93901 1.64589 1.01465 1.12985 1.44697 1.21997 0.95781 0.91580 0.99014 1.20786 0.84902 0.89629 0.82216 1.90440 1.26428 1.73489 1.59720 1.41921 1.15754 1.11709 1.51564 1.19667 1.01579 0.88625 1.36476 0.90331 1.26019 0.94532 1.04072 0.96476 1.69669 1.05682 1.39203 1.41564 0.84942 0.78235 0.77123 0.78123 1.19594 1.19509 1.19853 1.23115 0.97097 0.85905 1.02842 0.93120 0.88873 0.92604 0.89711 0.93237 0.91854 0.89669 0.87372 0.87393 0.74274 0.92974 0.92203 0.88642 0.90321 0.90717 0.90886 0.90868 0.95958 0.91625 0.87173 0.77041 0.91287 0.92927 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.56 71.98 0.69 -0.92 16 2 C 0.07 0.77 3.34 30.59 0.10 0.88 16 3 C -0.17 -1.47 9.53 71.98 0.69 -0.78 16 4 O -0.40 -7.28 9.52 -129.94 -1.24 -8.52 16 5 C 0.04 0.52 6.23 71.24 0.44 0.96 16 6 C 0.50 9.66 7.91 87.66 0.69 10.36 16 7 O -0.58 -18.05 16.50 16.01 0.26 -17.78 16 8 N -0.71 -9.12 5.56 -463.06 -2.57 -11.69 16 9 C 0.12 1.94 5.54 86.38 0.48 2.42 16 10 C -0.10 -1.32 4.49 30.60 0.14 -1.18 16 11 C -0.09 -1.59 3.00 -9.91 -0.03 -1.62 16 12 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 13 C -0.12 -2.84 5.87 31.80 0.19 -2.65 16 14 C 0.04 1.26 5.30 86.65 0.46 1.72 16 15 N -0.51 -16.52 5.26 -887.56 -4.67 -21.19 16 16 C 0.05 1.68 5.52 85.56 0.47 2.15 16 17 C 0.44 21.02 7.49 87.66 0.66 21.68 16 18 O -0.61 -33.88 13.10 -3.07 -0.04 -33.92 16 19 N -0.57 -29.63 5.29 -306.97 -1.62 -31.25 16 20 C -0.33 -19.10 9.68 84.04 0.81 -18.28 16 21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 22 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 23 N -0.92 -49.79 13.05 21.67 0.28 -49.51 16 24 Si 0.99 43.14 29.55 68.60 2.03 45.17 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 28 C 0.04 0.82 6.35 86.45 0.55 1.37 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.08 0.49 7.79 -2.39 -0.02 0.47 16 33 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 0.44 7.87 -2.38 -0.02 0.42 16 35 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.11 0.58 7.87 -2.39 -0.02 0.56 16 37 H 0.11 0.62 8.09 -2.39 -0.02 0.60 16 38 H 0.42 2.11 8.47 -92.71 -0.79 1.32 16 39 H 0.05 1.06 7.58 -2.39 -0.02 1.04 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 1.04 8.00 -2.39 -0.02 1.02 16 43 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.07 1.81 7.76 -2.38 -0.02 1.79 16 45 H 0.07 3.16 5.97 -2.39 -0.01 3.15 16 46 H 0.02 0.79 8.02 -2.39 -0.02 0.77 16 47 H 0.07 2.08 7.81 -2.38 -0.02 2.06 16 48 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 49 H 0.40 19.46 7.90 -92.71 -0.73 18.73 16 50 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 51 H 0.05 1.06 7.57 -2.39 -0.02 1.04 16 52 H 0.10 1.74 7.69 -2.38 -0.02 1.73 16 Total: -1.00 -79.91 419.72 -1.37 -81.28 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: -0.60 Total: 31.47 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 6.80 Total: 15.96 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -8.58 Total: -113.64 kcal Atomic # 8 Polarization: -59.21 SS G_CDS: -1.01 Total: -60.22 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -79.91 -1.37 -81.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713725591.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.879 kcal (2) G-P(sol) polarization free energy of solvation -79.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds