Wall clock time and date at job start Wed Apr 1 2020 00:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 O 1.42905 * 109.46728 * 180.02562 * 3 2 1 5 5 C 1.42899 * 113.99778 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46785 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00221 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99728 * 179.97438 * 6 5 4 9 9 C 1.47019 * 125.64916 * 359.69145 * 8 6 5 10 10 C 1.54334 * 107.26693 * 178.84711 * 9 8 6 11 11 C 1.55155 * 103.02038 * 338.14323 * 10 9 8 12 12 H 1.08999 * 111.03603 * 277.21494 * 11 10 9 13 13 C 1.52997 * 111.00491 * 153.37708 * 11 10 9 14 14 N 1.46902 * 109.47103 * 181.34665 * 13 11 10 15 15 C 1.46902 * 111.00453 * 293.95556 * 14 13 11 16 16 C 1.46904 * 111.00169 * 170.00108 * 14 13 11 17 17 C 1.50697 * 109.47260 * 190.00365 * 16 14 13 18 18 O 1.21284 * 120.00134 * 359.97438 * 17 16 14 19 19 N 1.34776 * 119.99605 * 180.02562 * 17 16 14 20 20 C 1.37095 * 119.99742 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00351 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00166 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99861 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00375 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46969 * 60.00080 * 24 22 20 26 26 H 1.48497 * 109.47418 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47284 * 300.00362 * 24 22 20 28 28 C 1.47425 * 125.64713 * 179.97438 * 8 6 5 29 29 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 30 30 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 32 32 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 33 33 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 34 34 H 1.09000 * 109.47486 * 60.00167 * 3 2 1 35 35 H 1.09001 * 109.47362 * 299.99445 * 3 2 1 36 36 H 1.08997 * 109.47171 * 299.99768 * 5 4 3 37 37 H 1.08997 * 109.47442 * 59.99964 * 5 4 3 38 38 H 1.08993 * 109.88618 * 298.39591 * 9 8 6 39 39 H 1.09003 * 109.88324 * 59.55974 * 9 8 6 40 40 H 1.08997 * 110.85421 * 219.67649 * 10 9 8 41 41 H 1.09000 * 110.66464 * 96.52081 * 10 9 8 42 42 H 1.08991 * 109.47660 * 301.34884 * 13 11 10 43 43 H 1.09000 * 109.46881 * 61.35406 * 13 11 10 44 44 H 1.09001 * 109.46639 * 59.99908 * 15 14 13 45 45 H 1.08997 * 109.47021 * 180.02562 * 15 14 13 46 46 H 1.08992 * 109.46831 * 300.00269 * 15 14 13 47 47 H 1.09007 * 109.46821 * 310.00461 * 16 14 13 48 48 H 1.08995 * 109.46973 * 69.99765 * 16 14 13 49 49 H 0.97006 * 120.00517 * 359.97438 * 19 17 16 50 50 H 0.96997 * 120.00030 * 179.97438 * 23 22 20 51 51 H 1.09000 * 110.36902 * 322.93224 * 28 8 6 52 52 H 1.09003 * 110.36586 * 85.14664 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0503 2.7479 -0.0012 6 6 5.5526 2.6288 -0.0012 7 8 6.0741 1.5339 -0.0002 8 7 6.3166 3.7392 -0.0023 9 6 5.8181 5.1222 -0.0100 10 6 7.0488 6.0530 0.0214 11 6 8.1604 5.1430 0.6077 12 1 8.1089 5.1142 1.6961 13 6 9.5444 5.5965 0.1389 14 7 10.5666 4.6946 0.6863 15 6 10.6390 4.8069 2.1492 16 6 11.8769 4.9502 0.0732 17 6 12.8382 3.8594 0.4694 18 8 12.4684 2.9580 1.1918 19 7 14.1092 3.8860 0.0218 20 6 14.9837 2.8934 0.3818 21 1 14.6542 2.0903 1.0244 22 6 16.2939 2.9205 -0.0800 23 7 16.6947 3.8974 -0.8623 24 14 17.4856 1.5685 0.4110 25 1 16.9673 0.2579 -0.0570 26 1 18.8103 1.8272 -0.2082 27 1 17.6266 1.5457 1.8892 28 6 7.7906 3.7679 -0.0018 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 3.7284 3.2885 -0.8912 37 1 3.7291 3.2891 0.8887 38 1 5.2378 5.3022 -0.9149 39 1 5.2000 5.2984 0.8704 40 1 6.8704 6.9105 0.6702 41 1 7.3093 6.3802 -0.9851 42 1 9.5849 5.5732 -0.9500 43 1 9.7314 6.6120 0.4879 44 1 9.6736 4.5445 2.5819 45 1 11.4038 4.1290 2.5282 46 1 10.8936 5.8308 2.4228 47 1 11.7734 4.9668 -1.0118 48 1 12.2573 5.9121 0.4166 49 1 14.4052 4.6071 -0.5556 50 1 17.6095 3.9166 -1.1844 51 1 8.1856 2.9608 0.6152 52 1 8.1718 3.6877 -1.0198 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713747680.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:46 Heat of formation + Delta-G solvation = -111.112816 kcal Electronic energy + Delta-G solvation = -29494.664127 eV Core-core repulsion = 25301.457744 eV Total energy + Delta-G solvation = -4193.206383 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.32603 -38.87089 -38.29986 -37.46011 -36.05768 -34.05195 -33.83951 -32.34753 -31.20094 -29.65534 -28.93345 -27.74637 -26.60468 -25.70986 -24.62608 -23.52264 -22.00231 -21.93985 -20.14613 -19.55402 -19.08723 -17.80476 -17.54860 -17.12374 -16.80047 -16.34316 -15.81918 -15.63561 -15.29196 -15.09101 -14.84219 -14.54182 -14.28729 -14.07811 -13.86623 -13.61205 -13.46652 -13.36690 -13.04161 -12.91062 -12.55057 -12.46112 -12.33689 -12.28298 -12.12109 -11.75646 -11.58579 -11.38153 -11.32866 -11.29619 -11.26326 -11.15609 -11.03393 -10.85254 -10.64351 -10.40790 -10.17532 -10.06467 -9.88000 -9.42944 -8.79555 -8.41583 -7.94030 -7.82208 -6.38119 -3.78623 2.45561 2.47309 3.23380 3.28601 3.33433 3.50719 3.88932 3.95364 4.20523 4.28491 4.30178 4.52739 4.55683 4.61157 4.70333 4.73077 4.82495 4.89677 4.92955 5.03529 5.05879 5.10634 5.12808 5.23192 5.28089 5.30317 5.35863 5.45430 5.56157 5.58796 5.63409 5.71282 5.72287 5.73888 5.80128 5.81554 5.96355 6.01491 6.04608 6.09177 6.18950 6.31864 6.58684 6.71931 7.27867 7.32627 7.40332 7.58869 8.04509 8.10303 8.66026 9.22203 9.58517 10.10796 10.79628 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016169 B = 0.001765 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.310638 B =15861.274699 C =17173.577319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.060 3.940 4 O -0.364 6.364 5 C 0.051 3.949 6 C 0.526 3.474 7 O -0.512 6.512 8 N -0.623 5.623 9 C 0.099 3.901 10 C -0.127 4.127 11 C -0.095 4.095 12 H 0.087 0.913 13 C 0.065 3.935 14 N -0.519 5.519 15 C 0.021 3.979 16 C 0.047 3.953 17 C 0.444 3.556 18 O -0.576 6.576 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.124 3.876 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.037 0.963 44 H 0.060 0.940 45 H 0.096 0.904 46 H 0.013 0.987 47 H 0.087 0.913 48 H 0.047 0.953 49 H 0.391 0.609 50 H 0.271 0.729 51 H 0.088 0.912 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.403 8.037 -0.162 30.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.016 4.016 4 O -0.282 6.282 5 C -0.029 4.029 6 C 0.313 3.687 7 O -0.386 6.386 8 N -0.360 5.360 9 C -0.024 4.024 10 C -0.165 4.165 11 C -0.114 4.114 12 H 0.105 0.895 13 C -0.063 4.063 14 N -0.242 5.242 15 C -0.127 4.127 16 C -0.085 4.085 17 C 0.229 3.771 18 O -0.459 6.459 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.200 1.200 28 C 0.002 3.998 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.055 0.945 44 H 0.078 0.922 45 H 0.114 0.886 46 H 0.032 0.968 47 H 0.106 0.894 48 H 0.065 0.935 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.107 0.893 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -29.257 6.105 0.123 29.888 hybrid contribution 0.888 1.126 -0.038 1.435 sum -28.369 7.231 0.086 29.276 Atomic orbital electron populations 1.21696 0.94650 1.02370 1.01922 1.21459 0.95580 0.95368 1.03836 1.22637 0.80467 0.98383 1.00155 1.88026 1.19563 1.25242 1.95399 1.22141 0.91613 0.86826 1.02273 1.19845 0.88184 0.83446 0.77262 1.90782 1.74366 1.25687 1.47777 1.48513 1.08058 1.05348 1.74082 1.22062 0.97380 0.81493 1.01476 1.22678 0.93828 0.97553 1.02484 1.22371 0.93846 0.94284 1.00939 0.89462 1.22074 0.90369 0.93911 0.99988 1.61561 1.04923 1.51778 1.05956 1.22567 1.03264 0.99596 0.87245 1.21857 0.89474 0.97145 0.99997 1.19740 0.83074 0.88524 0.85758 1.90494 1.77113 1.37965 1.40370 1.41856 1.08479 1.24994 1.44850 1.19654 0.90513 1.04156 1.28470 0.87974 1.25242 0.97879 0.98137 0.96644 1.69604 1.18796 1.32004 1.34064 0.85926 0.78814 0.80738 0.78792 1.19888 1.21021 1.19963 1.22208 0.77465 0.98298 1.01780 0.92549 0.91900 0.92549 0.90880 0.90870 0.93189 0.93205 0.90479 0.90472 0.91352 0.91445 0.89856 0.90145 0.90530 0.94500 0.92178 0.88584 0.96820 0.89441 0.93510 0.77540 0.91890 0.89312 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.12 -0.90 6.30 -26.73 -0.17 -1.07 16 3 C 0.06 0.46 5.94 37.16 0.22 0.68 16 4 O -0.36 -4.27 9.88 -55.14 -0.54 -4.81 16 5 C 0.05 0.48 5.61 36.01 0.20 0.68 16 6 C 0.53 7.05 7.93 -10.98 -0.09 6.96 16 7 O -0.51 -9.65 16.76 -14.35 -0.24 -9.89 16 8 N -0.62 -6.96 3.33 -170.53 -0.57 -7.52 16 9 C 0.10 0.66 6.49 -3.06 -0.02 0.64 16 10 C -0.13 -0.83 6.42 -24.89 -0.16 -0.99 16 11 C -0.09 -0.95 2.90 -88.48 -0.26 -1.21 16 12 H 0.09 0.91 6.54 -51.93 -0.34 0.57 16 13 C 0.07 0.75 4.41 -3.82 -0.02 0.73 16 14 N -0.52 -8.32 4.32 -244.37 -1.06 -9.37 16 15 C 0.02 0.33 8.98 60.07 0.54 0.87 16 16 C 0.05 0.82 5.45 -4.97 -0.03 0.79 16 17 C 0.44 10.50 7.47 -10.99 -0.08 10.42 16 18 O -0.58 -15.63 13.91 5.55 0.08 -15.55 16 19 N -0.56 -14.39 5.29 -10.97 -0.06 -14.45 16 20 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.72 13.05 55.50 0.72 -23.99 16 24 Si 0.93 21.37 29.55 -169.99 -5.02 16.35 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 28 C 0.12 1.59 6.20 -2.54 -0.02 1.57 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.48 8.04 -51.93 -0.42 0.06 16 42 H 0.08 0.82 7.89 -51.93 -0.41 0.41 16 43 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 44 H 0.06 0.85 6.45 -51.93 -0.33 0.51 16 45 H 0.10 1.91 5.82 -51.93 -0.30 1.60 16 46 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 47 H 0.09 1.39 7.93 -51.92 -0.41 0.97 16 48 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 49 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 50 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 51 H 0.09 1.45 8.04 -51.93 -0.42 1.03 16 52 H 0.07 0.96 8.01 -51.93 -0.42 0.54 16 LS Contribution 420.74 15.07 6.34 6.34 Total: -1.00 -35.72 420.74 -9.31 -45.03 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -9.22 Total: 6.19 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: 0.26 Total: 11.68 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.96 Total: -55.34 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.71 Total: -30.26 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -35.72 -9.31 -45.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713747680.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.079 kcal (2) G-P(sol) polarization free energy of solvation -35.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds