Wall clock time and date at job start Wed Apr 1 2020 00:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 O 1.42905 * 109.46728 * 180.02562 * 3 2 1 5 5 C 1.42899 * 113.99778 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46785 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00221 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99728 * 179.97438 * 6 5 4 9 9 C 1.47019 * 125.64916 * 359.69145 * 8 6 5 10 10 C 1.54334 * 107.26693 * 178.84711 * 9 8 6 11 11 C 1.55155 * 103.02038 * 338.14323 * 10 9 8 12 12 H 1.08999 * 111.03603 * 277.21494 * 11 10 9 13 13 C 1.52997 * 111.00491 * 153.37708 * 11 10 9 14 14 N 1.46902 * 109.47103 * 181.34665 * 13 11 10 15 15 C 1.46902 * 111.00453 * 293.95556 * 14 13 11 16 16 C 1.46904 * 111.00169 * 170.00108 * 14 13 11 17 17 C 1.50697 * 109.47260 * 190.00365 * 16 14 13 18 18 O 1.21284 * 120.00134 * 359.97438 * 17 16 14 19 19 N 1.34776 * 119.99605 * 180.02562 * 17 16 14 20 20 C 1.37095 * 119.99742 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00351 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00166 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99861 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00375 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46969 * 60.00080 * 24 22 20 26 26 H 1.48497 * 109.47418 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47284 * 300.00362 * 24 22 20 28 28 C 1.47425 * 125.64713 * 179.97438 * 8 6 5 29 29 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 30 30 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 32 32 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 33 33 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 34 34 H 1.09000 * 109.47486 * 60.00167 * 3 2 1 35 35 H 1.09001 * 109.47362 * 299.99445 * 3 2 1 36 36 H 1.08997 * 109.47171 * 299.99768 * 5 4 3 37 37 H 1.08997 * 109.47442 * 59.99964 * 5 4 3 38 38 H 1.08993 * 109.88618 * 298.39591 * 9 8 6 39 39 H 1.09003 * 109.88324 * 59.55974 * 9 8 6 40 40 H 1.08997 * 110.85421 * 219.67649 * 10 9 8 41 41 H 1.09000 * 110.66464 * 96.52081 * 10 9 8 42 42 H 1.08991 * 109.47660 * 301.34884 * 13 11 10 43 43 H 1.09000 * 109.46881 * 61.35406 * 13 11 10 44 44 H 1.09001 * 109.46639 * 59.99908 * 15 14 13 45 45 H 1.08997 * 109.47021 * 180.02562 * 15 14 13 46 46 H 1.08992 * 109.46831 * 300.00269 * 15 14 13 47 47 H 1.09007 * 109.46821 * 310.00461 * 16 14 13 48 48 H 1.08995 * 109.46973 * 69.99765 * 16 14 13 49 49 H 0.97006 * 120.00517 * 359.97438 * 19 17 16 50 50 H 0.96997 * 120.00030 * 179.97438 * 23 22 20 51 51 H 1.09000 * 110.36902 * 322.93224 * 28 8 6 52 52 H 1.09003 * 110.36586 * 85.14664 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0503 2.7479 -0.0012 6 6 5.5526 2.6288 -0.0012 7 8 6.0741 1.5339 -0.0002 8 7 6.3166 3.7392 -0.0023 9 6 5.8181 5.1222 -0.0100 10 6 7.0488 6.0530 0.0214 11 6 8.1604 5.1430 0.6077 12 1 8.1089 5.1142 1.6961 13 6 9.5444 5.5965 0.1389 14 7 10.5666 4.6946 0.6863 15 6 10.6390 4.8069 2.1492 16 6 11.8769 4.9502 0.0732 17 6 12.8382 3.8594 0.4694 18 8 12.4684 2.9580 1.1918 19 7 14.1092 3.8860 0.0218 20 6 14.9837 2.8934 0.3818 21 1 14.6542 2.0903 1.0244 22 6 16.2939 2.9205 -0.0800 23 7 16.6947 3.8974 -0.8623 24 14 17.4856 1.5685 0.4110 25 1 16.9673 0.2579 -0.0570 26 1 18.8103 1.8272 -0.2082 27 1 17.6266 1.5457 1.8892 28 6 7.7906 3.7679 -0.0018 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 3.7284 3.2885 -0.8912 37 1 3.7291 3.2891 0.8887 38 1 5.2378 5.3022 -0.9149 39 1 5.2000 5.2984 0.8704 40 1 6.8704 6.9105 0.6702 41 1 7.3093 6.3802 -0.9851 42 1 9.5849 5.5732 -0.9500 43 1 9.7314 6.6120 0.4879 44 1 9.6736 4.5445 2.5819 45 1 11.4038 4.1290 2.5282 46 1 10.8936 5.8308 2.4228 47 1 11.7734 4.9668 -1.0118 48 1 12.2573 5.9121 0.4166 49 1 14.4052 4.6071 -0.5556 50 1 17.6095 3.9166 -1.1844 51 1 8.1856 2.9608 0.6152 52 1 8.1718 3.6877 -1.0198 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713747680.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:45 Heat of formation + Delta-G solvation = -137.508794 kcal Electronic energy + Delta-G solvation = -29495.808742 eV Core-core repulsion = 25301.457744 eV Total energy + Delta-G solvation = -4194.350998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.23717 -40.36479 -39.34400 -38.48085 -37.33283 -35.85691 -34.60652 -33.37902 -33.20340 -30.41777 -29.84939 -29.10249 -27.53828 -26.75208 -26.12105 -24.49424 -23.01976 -22.48510 -21.03784 -20.94867 -20.38276 -19.83559 -18.38112 -18.03094 -17.66389 -17.50063 -16.88314 -16.57942 -16.48457 -16.43984 -16.31619 -15.87805 -15.41969 -15.19303 -14.93667 -14.87956 -14.70648 -14.38616 -13.95683 -13.76213 -13.70880 -13.46624 -13.30106 -13.09040 -13.03982 -13.02363 -12.89300 -12.67286 -12.62162 -12.43247 -12.31326 -12.13521 -12.08134 -11.88466 -11.83876 -11.80562 -11.46858 -11.42447 -10.92311 -10.69691 -10.25884 -9.98864 -9.70494 -9.12811 -8.46052 -5.94299 1.38843 1.40420 1.50436 1.51184 1.66190 2.07853 2.28601 2.76641 2.87651 3.20945 3.39470 3.51445 3.65435 3.79705 3.90438 4.02064 4.07022 4.17779 4.20683 4.24414 4.35008 4.37214 4.40568 4.44742 4.49555 4.54297 4.55178 4.58074 4.64245 4.66302 4.73506 4.78669 4.83313 4.83737 4.95918 5.03310 5.14525 5.15964 5.21999 5.23264 5.25929 5.34971 5.40898 5.42604 5.90699 6.09667 6.10414 6.27785 6.48721 6.62608 7.09417 7.14503 7.58457 8.15584 8.71113 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016169 B = 0.001765 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.310638 B =15861.274699 C =17173.577319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.057 3.943 4 O -0.407 6.407 5 C 0.058 3.942 6 C 0.512 3.488 7 O -0.587 6.587 8 N -0.619 5.619 9 C 0.091 3.909 10 C -0.114 4.114 11 C -0.087 4.087 12 H 0.083 0.917 13 C 0.067 3.933 14 N -0.545 5.545 15 C 0.029 3.971 16 C 0.060 3.940 17 C 0.438 3.562 18 O -0.617 6.617 19 N -0.575 5.575 20 C -0.334 4.334 21 H 0.075 0.925 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.275 1.275 26 H -0.268 1.268 27 H -0.272 1.272 28 C 0.121 3.879 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.048 0.952 46 H 0.035 0.965 47 H 0.109 0.891 48 H 0.071 0.929 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.038 0.962 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.669 11.388 -0.760 33.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 C -0.019 4.019 4 O -0.327 6.327 5 C -0.021 4.021 6 C 0.302 3.698 7 O -0.467 6.467 8 N -0.354 5.354 9 C -0.030 4.030 10 C -0.152 4.152 11 C -0.107 4.107 12 H 0.101 0.899 13 C -0.060 4.060 14 N -0.269 5.269 15 C -0.119 4.119 16 C -0.071 4.071 17 C 0.226 3.774 18 O -0.503 6.503 19 N -0.212 5.212 20 C -0.464 4.464 21 H 0.093 0.907 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.814 3.186 25 H -0.201 1.201 26 H -0.192 1.192 27 H -0.198 1.198 28 C -0.001 4.001 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.130 0.870 41 H 0.111 0.889 42 H 0.105 0.895 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.067 0.933 46 H 0.054 0.946 47 H 0.127 0.873 48 H 0.089 0.911 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.056 0.944 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -31.555 9.546 -0.489 32.971 hybrid contribution 1.539 0.093 0.156 1.550 sum -30.016 9.639 -0.333 31.528 Atomic orbital electron populations 1.21659 0.92639 1.02851 1.02863 1.21508 0.97292 0.95468 1.02401 1.22838 0.78552 0.98582 1.01942 1.87988 1.21865 1.27027 1.95799 1.22255 0.88038 0.86528 1.05245 1.20827 0.90266 0.82831 0.75924 1.90740 1.75954 1.28570 1.51439 1.48639 1.07237 1.07097 1.72452 1.22468 0.98042 0.78358 1.04115 1.22711 0.91556 0.97374 1.03546 1.22300 0.94521 0.93239 1.00620 0.89875 1.22190 0.89228 0.94100 1.00496 1.61488 1.05040 1.54422 1.05968 1.22382 1.02419 0.99539 0.87531 1.21714 0.88873 0.95205 1.01275 1.20922 0.83183 0.89223 0.84081 1.90476 1.77863 1.40106 1.41860 1.41920 1.09080 1.24798 1.45450 1.19597 0.92024 1.04981 1.29775 0.90656 1.25979 0.98721 1.00175 0.96202 1.69658 1.19428 1.32869 1.34084 0.85029 0.77171 0.77841 0.78524 1.20082 1.19243 1.19756 1.22063 0.79040 0.98726 1.00288 0.91533 0.91733 0.91589 0.92338 0.92410 0.91320 0.91233 0.87079 0.87261 0.88563 0.88908 0.86952 0.88880 0.89484 0.91868 0.90852 0.93315 0.94644 0.87273 0.91088 0.76984 0.91315 0.94360 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.91 71.98 0.71 -0.50 16 2 C -0.13 -1.85 6.30 30.60 0.19 -1.65 16 3 C 0.06 0.77 5.94 71.98 0.43 1.20 16 4 O -0.41 -9.41 9.88 -129.94 -1.28 -10.69 16 5 C 0.06 0.97 5.61 71.24 0.40 1.37 16 6 C 0.51 13.90 7.93 87.66 0.69 14.59 16 7 O -0.59 -23.90 16.76 16.02 0.27 -23.63 16 8 N -0.62 -13.24 3.33 -811.82 -2.70 -15.94 16 9 C 0.09 0.83 6.49 86.73 0.56 1.40 16 10 C -0.11 -0.95 6.42 31.79 0.20 -0.74 16 11 C -0.09 -1.56 2.90 -9.41 -0.03 -1.59 16 12 H 0.08 1.58 6.54 -2.39 -0.02 1.56 16 13 C 0.07 1.36 4.41 86.30 0.38 1.74 16 14 N -0.54 -17.20 4.32 -927.06 -4.01 -21.21 16 15 C 0.03 0.93 8.98 127.69 1.15 2.08 16 16 C 0.06 2.07 5.45 85.56 0.47 2.54 16 17 C 0.44 21.42 7.47 87.66 0.66 22.07 16 18 O -0.62 -35.41 13.91 -3.04 -0.04 -35.45 16 19 N -0.57 -30.15 5.29 -307.00 -1.62 -31.77 16 20 C -0.33 -19.51 9.68 84.04 0.81 -18.70 16 21 H 0.08 4.72 7.16 -2.91 -0.02 4.69 16 22 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 23 N -0.92 -50.28 13.05 21.66 0.28 -49.99 16 24 Si 0.99 44.18 29.55 68.60 2.03 46.21 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 27 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 28 C 0.12 3.19 6.20 86.85 0.54 3.73 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.09 0.61 8.04 -2.39 -0.02 0.59 16 42 H 0.09 1.60 7.89 -2.39 -0.02 1.58 16 43 H 0.06 1.01 8.12 -2.39 -0.02 0.99 16 44 H 0.07 2.08 6.45 -2.39 -0.02 2.06 16 45 H 0.05 2.03 5.82 -2.39 -0.01 2.01 16 46 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.11 3.28 7.93 -2.38 -0.02 3.26 16 48 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 49 H 0.40 19.57 7.90 -92.70 -0.73 18.84 16 50 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 51 H 0.04 1.37 8.04 -2.39 -0.02 1.35 16 52 H 0.06 1.66 8.01 -2.39 -0.02 1.65 16 Total: -1.00 -86.21 420.74 0.72 -85.49 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.17 Total: 29.60 kcal Atomic # 6 Polarization: 19.76 SS G_CDS: 7.64 Total: 27.39 kcal Atomic # 7 Polarization: -110.87 SS G_CDS: -8.05 Total: -118.92 kcal Atomic # 8 Polarization: -68.71 SS G_CDS: -1.06 Total: -69.77 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -86.21 0.72 -85.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713747680.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.022 kcal (2) G-P(sol) polarization free energy of solvation -86.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds