Wall clock time and date at job start Wed Apr 1 2020 00:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46890 * 2 1 4 4 O 1.42904 * 109.47187 * 179.97438 * 3 2 1 5 5 C 1.42898 * 114.00180 * 180.02562 * 4 3 2 6 6 C 1.50708 * 109.46889 * 180.02562 * 5 4 3 7 7 O 1.21276 * 119.99857 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99492 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99459 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47007 * 180.02562 * 9 8 6 11 11 H 1.08999 * 109.53654 * 55.09806 * 10 9 8 12 12 C 1.53124 * 109.50236 * 295.00285 * 10 9 8 13 13 C 1.53126 * 109.15878 * 182.40456 * 12 10 9 14 14 C 1.53037 * 109.27801 * 57.65645 * 13 12 10 15 15 N 1.46854 * 109.51886 * 300.81620 * 14 13 12 16 16 C 1.46897 * 110.99665 * 185.84309 * 15 14 13 17 17 C 1.50706 * 109.47378 * 66.04756 * 16 15 14 18 18 O 1.21291 * 119.99732 * 359.97438 * 17 16 15 19 19 N 1.34773 * 119.99794 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99408 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00513 * 359.97438 * 20 19 17 22 22 C 1.38954 * 119.99547 * 179.97438 * 20 19 17 23 23 N 1.31406 * 120.00214 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99618 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46813 * 90.00178 * 24 22 20 26 26 H 1.48504 * 109.47018 * 209.99942 * 24 22 20 27 27 H 1.48493 * 109.47364 * 329.99936 * 24 22 20 28 28 C 1.46844 * 111.19703 * 61.74789 * 15 14 13 29 29 H 1.09003 * 109.47202 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47162 * 300.00273 * 1 2 3 31 31 H 1.09001 * 109.47156 * 60.00412 * 1 2 3 32 32 H 1.09002 * 109.47162 * 239.99727 * 2 1 3 33 33 H 1.09004 * 109.46855 * 120.00014 * 2 1 3 34 34 H 1.09002 * 109.47441 * 59.99898 * 3 2 1 35 35 H 1.08995 * 109.47544 * 299.99726 * 3 2 1 36 36 H 1.08997 * 109.47089 * 60.00144 * 5 4 3 37 37 H 1.09003 * 109.46918 * 299.99882 * 5 4 3 38 38 H 0.96995 * 120.00342 * 359.97438 * 8 6 5 39 39 H 1.08997 * 109.47149 * 60.00338 * 9 8 6 40 40 H 1.08994 * 109.47205 * 300.00007 * 9 8 6 41 41 H 1.08998 * 109.52745 * 62.49784 * 12 10 9 42 42 H 1.08999 * 109.52030 * 302.30240 * 12 10 9 43 43 H 1.09000 * 109.49775 * 177.59563 * 13 12 10 44 44 H 1.08992 * 109.50023 * 297.71261 * 13 12 10 45 45 H 1.08994 * 109.46593 * 60.83220 * 14 13 12 46 46 H 1.09004 * 109.46132 * 180.80891 * 14 13 12 47 47 H 1.09000 * 109.47184 * 186.04917 * 16 15 14 48 48 H 1.09000 * 109.47282 * 306.04863 * 16 15 14 49 49 H 0.97000 * 120.00473 * 359.97438 * 19 17 16 50 50 H 0.97008 * 120.00045 * 180.02562 * 23 22 20 51 51 H 1.09002 * 109.46133 * 58.27161 * 28 15 14 52 52 H 1.09002 * 109.46165 * 178.24800 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0502 2.7480 0.0012 6 6 5.5525 2.6290 0.0012 7 8 6.0741 1.5341 0.0012 8 7 6.3164 3.7394 0.0012 9 6 7.7768 3.6237 0.0018 10 6 8.3991 5.0214 0.0023 11 1 8.0101 5.5932 0.8448 12 6 8.0502 5.7368 -1.3058 13 6 8.7262 7.1107 -1.3229 14 6 10.2377 6.9322 -1.1633 15 7 10.5195 6.2439 0.1030 16 6 11.9650 6.1782 0.3561 17 6 12.5000 7.5696 0.5775 18 8 11.7509 8.5222 0.5288 19 7 13.8111 7.7553 0.8287 20 6 14.2976 9.0211 1.0306 21 1 13.6305 9.8693 0.9881 22 6 15.6492 9.2125 1.2901 23 7 16.4609 8.1804 1.3424 24 14 16.3124 10.9372 1.5646 25 1 16.2421 11.2703 3.0100 26 1 17.7244 11.0029 1.1095 27 1 15.4978 11.9095 0.7924 28 6 9.9201 4.9035 0.1236 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.7282 3.2886 0.8912 37 1 3.7289 3.2892 -0.8888 38 1 5.8993 4.6151 0.0009 39 1 8.0988 3.0826 -0.8880 40 1 8.0981 3.0830 0.8919 41 1 6.9697 5.8616 -1.3758 42 1 8.4051 5.1458 -2.1501 43 1 8.5165 7.6076 -2.2702 44 1 8.3424 7.7153 -0.5013 45 1 10.6230 6.3390 -1.9926 46 1 10.7206 7.9094 -1.1607 47 1 12.1514 5.5719 1.2425 48 1 12.4642 5.7294 -0.5026 49 1 14.4102 6.9935 0.8673 50 1 17.4044 8.3141 1.5239 51 1 10.3070 4.3199 -0.7118 52 1 10.1722 4.4073 1.0608 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714030595.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:47 Heat of formation + Delta-G solvation = -130.414805 kcal Electronic energy + Delta-G solvation = -29105.267107 eV Core-core repulsion = 24911.223727 eV Total energy + Delta-G solvation = -4194.043380 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.20756 -39.28274 -38.20279 -37.66337 -35.37391 -34.12697 -33.92439 -32.94702 -31.50845 -31.16906 -28.98689 -27.48237 -26.40227 -25.27234 -24.62948 -22.84252 -22.07094 -21.74690 -20.85388 -19.66504 -19.15058 -17.86356 -17.54083 -17.20961 -16.97717 -16.15239 -15.79087 -15.67563 -15.38666 -14.98802 -14.80150 -14.62828 -14.61806 -14.15647 -13.93531 -13.79771 -13.64400 -13.40309 -13.33915 -12.73745 -12.70015 -12.57867 -12.45289 -12.36132 -12.12476 -11.84528 -11.50206 -11.41639 -11.40031 -11.35588 -11.07128 -11.03571 -10.68454 -10.40430 -10.36582 -10.30904 -10.21134 -10.15868 -10.04910 -9.45920 -9.34181 -8.42549 -7.97085 -7.83285 -6.41232 -3.82012 2.32986 2.44193 3.17925 3.26566 3.32011 3.52733 3.90892 3.97132 4.23284 4.34784 4.45947 4.55242 4.61166 4.67058 4.71525 4.73429 4.79123 4.82688 4.97423 4.99355 5.05567 5.22715 5.23490 5.25612 5.32171 5.41398 5.48668 5.52204 5.53825 5.61858 5.64650 5.71158 5.73993 5.75714 5.86818 5.93482 5.99491 6.05383 6.07144 6.18445 6.29062 6.45002 6.54142 6.60024 7.17861 7.31138 7.43682 7.55538 7.93256 8.07061 8.62542 9.18688 9.55358 10.07143 10.76522 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.040117 B = 0.001431 C = 0.001410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.789591 B =19567.051342 C =19849.316511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.365 6.365 5 C 0.045 3.955 6 C 0.512 3.488 7 O -0.520 6.520 8 N -0.726 5.726 9 C 0.127 3.873 10 C -0.095 4.095 11 H 0.088 0.912 12 C -0.115 4.115 13 C -0.113 4.113 14 C 0.051 3.949 15 N -0.514 5.514 16 C 0.046 3.954 17 C 0.444 3.556 18 O -0.578 6.578 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.063 3.937 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.401 0.599 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.020 0.980 46 H 0.103 0.897 47 H 0.088 0.912 48 H 0.047 0.953 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.033 0.967 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.557 -12.291 -4.536 29.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.283 6.283 5 C -0.035 4.035 6 C 0.297 3.703 7 O -0.394 6.394 8 N -0.380 5.380 9 C 0.003 3.997 10 C -0.114 4.114 11 H 0.107 0.893 12 C -0.152 4.152 13 C -0.151 4.151 14 C -0.077 4.077 15 N -0.238 5.238 16 C -0.085 4.085 17 C 0.230 3.770 18 O -0.462 6.462 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.066 4.066 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.236 0.764 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.039 0.961 46 H 0.121 0.879 47 H 0.107 0.893 48 H 0.065 0.935 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.051 0.949 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -26.560 -12.365 -4.163 29.591 hybrid contribution 0.883 0.565 -0.427 1.132 sum -25.677 -11.799 -4.591 28.629 Atomic orbital electron populations 1.21700 0.94607 1.02388 1.02006 1.21453 0.95641 0.95347 1.03727 1.22650 0.80374 0.98391 1.00298 1.88011 1.19657 1.25180 1.95443 1.22184 0.91663 0.87042 1.02646 1.20229 0.88625 0.84635 0.76860 1.90746 1.74611 1.26488 1.47569 1.45878 1.07335 1.08670 1.76117 1.21389 0.78364 0.97293 1.02633 1.21405 0.95886 0.94532 0.99578 0.89347 1.21674 0.99809 0.97012 0.96751 1.21539 0.95380 0.96278 1.01862 1.22270 0.96065 1.01050 0.88278 1.61455 1.11102 1.16465 1.34766 1.21837 0.87914 0.97537 1.01207 1.19736 0.83066 0.89813 0.84429 1.90478 1.57023 1.42464 1.56225 1.41870 1.06601 1.09477 1.62148 1.19696 0.92630 0.85361 1.45174 0.87928 1.25251 0.95928 0.99314 0.97391 1.69612 1.05130 1.30124 1.49457 0.85871 0.77888 0.81932 0.78669 1.20410 1.20956 1.19446 1.21988 0.93024 0.90474 1.01081 0.91903 0.92495 0.92508 0.90948 0.90926 0.93095 0.93117 0.90193 0.90260 0.76402 0.91309 0.91085 0.92285 0.92179 0.91828 0.90868 0.96135 0.87876 0.89336 0.93503 0.77498 0.91888 0.94906 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.91 37.16 0.37 -0.25 16 2 C -0.12 -0.75 6.30 -26.73 -0.17 -0.92 16 3 C 0.06 0.38 5.94 37.16 0.22 0.60 16 4 O -0.36 -3.64 9.88 -55.14 -0.54 -4.18 16 5 C 0.04 0.33 6.42 36.01 0.23 0.56 16 6 C 0.51 5.34 7.91 -10.98 -0.09 5.25 16 7 O -0.52 -7.99 16.50 -14.35 -0.24 -8.23 16 8 N -0.73 -5.88 5.31 -60.30 -0.32 -6.20 16 9 C 0.13 1.20 5.07 -4.04 -0.02 1.18 16 10 C -0.09 -0.94 2.39 -90.54 -0.22 -1.16 16 11 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 12 C -0.11 -1.10 5.13 -26.60 -0.14 -1.24 16 13 C -0.11 -1.38 6.09 -26.65 -0.16 -1.54 16 14 C 0.05 0.80 5.11 -3.83 -0.02 0.78 16 15 N -0.51 -8.22 4.39 -236.11 -1.04 -9.26 16 16 C 0.05 0.82 5.45 -4.97 -0.03 0.79 16 17 C 0.44 10.32 7.46 -10.98 -0.08 10.24 16 18 O -0.58 -15.20 13.92 5.55 0.08 -15.13 16 19 N -0.56 -14.17 5.29 -10.96 -0.06 -14.22 16 20 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.46 13.05 55.50 0.72 -23.74 16 24 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 28 C 0.06 0.77 4.74 -3.84 -0.02 0.75 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.40 2.15 7.67 -40.82 -0.31 1.84 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.44 7.25 -51.93 -0.38 0.07 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.10 2.00 5.80 -51.93 -0.30 1.70 16 47 H 0.09 1.42 7.98 -51.93 -0.41 1.00 16 48 H 0.05 0.77 8.12 -51.93 -0.42 0.34 16 49 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 50 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 51 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 52 H 0.08 0.89 8.01 -51.93 -0.42 0.47 16 LS Contribution 418.92 15.07 6.31 6.31 Total: -1.00 -34.40 418.92 -9.73 -44.13 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -9.26 Total: 7.48 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -0.36 Total: 7.14 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.69 Total: -53.43 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.70 Total: -27.54 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -34.40 -9.73 -44.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714030595.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.289 kcal (2) G-P(sol) polarization free energy of solvation -34.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds