Wall clock time and date at job start Wed Apr 1 2020 00:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46890 * 2 1 4 4 O 1.42904 * 109.47187 * 179.97438 * 3 2 1 5 5 C 1.42898 * 114.00180 * 180.02562 * 4 3 2 6 6 C 1.50708 * 109.46889 * 180.02562 * 5 4 3 7 7 O 1.21276 * 119.99857 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99492 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99459 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47007 * 180.02562 * 9 8 6 11 11 H 1.08999 * 109.53654 * 55.09806 * 10 9 8 12 12 C 1.53124 * 109.50236 * 295.00285 * 10 9 8 13 13 C 1.53126 * 109.15878 * 182.40456 * 12 10 9 14 14 C 1.53037 * 109.27801 * 57.65645 * 13 12 10 15 15 N 1.46854 * 109.51886 * 300.81620 * 14 13 12 16 16 C 1.46897 * 110.99665 * 185.84309 * 15 14 13 17 17 C 1.50706 * 109.47378 * 66.04756 * 16 15 14 18 18 O 1.21291 * 119.99732 * 359.97438 * 17 16 15 19 19 N 1.34773 * 119.99794 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99408 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00513 * 359.97438 * 20 19 17 22 22 C 1.38954 * 119.99547 * 179.97438 * 20 19 17 23 23 N 1.31406 * 120.00214 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99618 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46813 * 90.00178 * 24 22 20 26 26 H 1.48504 * 109.47018 * 209.99942 * 24 22 20 27 27 H 1.48493 * 109.47364 * 329.99936 * 24 22 20 28 28 C 1.46844 * 111.19703 * 61.74789 * 15 14 13 29 29 H 1.09003 * 109.47202 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47162 * 300.00273 * 1 2 3 31 31 H 1.09001 * 109.47156 * 60.00412 * 1 2 3 32 32 H 1.09002 * 109.47162 * 239.99727 * 2 1 3 33 33 H 1.09004 * 109.46855 * 120.00014 * 2 1 3 34 34 H 1.09002 * 109.47441 * 59.99898 * 3 2 1 35 35 H 1.08995 * 109.47544 * 299.99726 * 3 2 1 36 36 H 1.08997 * 109.47089 * 60.00144 * 5 4 3 37 37 H 1.09003 * 109.46918 * 299.99882 * 5 4 3 38 38 H 0.96995 * 120.00342 * 359.97438 * 8 6 5 39 39 H 1.08997 * 109.47149 * 60.00338 * 9 8 6 40 40 H 1.08994 * 109.47205 * 300.00007 * 9 8 6 41 41 H 1.08998 * 109.52745 * 62.49784 * 12 10 9 42 42 H 1.08999 * 109.52030 * 302.30240 * 12 10 9 43 43 H 1.09000 * 109.49775 * 177.59563 * 13 12 10 44 44 H 1.08992 * 109.50023 * 297.71261 * 13 12 10 45 45 H 1.08994 * 109.46593 * 60.83220 * 14 13 12 46 46 H 1.09004 * 109.46132 * 180.80891 * 14 13 12 47 47 H 1.09000 * 109.47184 * 186.04917 * 16 15 14 48 48 H 1.09000 * 109.47282 * 306.04863 * 16 15 14 49 49 H 0.97000 * 120.00473 * 359.97438 * 19 17 16 50 50 H 0.97008 * 120.00045 * 180.02562 * 23 22 20 51 51 H 1.09002 * 109.46133 * 58.27161 * 28 15 14 52 52 H 1.09002 * 109.46165 * 178.24800 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0502 2.7480 0.0012 6 6 5.5525 2.6290 0.0012 7 8 6.0741 1.5341 0.0012 8 7 6.3164 3.7394 0.0012 9 6 7.7768 3.6237 0.0018 10 6 8.3991 5.0214 0.0023 11 1 8.0101 5.5932 0.8448 12 6 8.0502 5.7368 -1.3058 13 6 8.7262 7.1107 -1.3229 14 6 10.2377 6.9322 -1.1633 15 7 10.5195 6.2439 0.1030 16 6 11.9650 6.1782 0.3561 17 6 12.5000 7.5696 0.5775 18 8 11.7509 8.5222 0.5288 19 7 13.8111 7.7553 0.8287 20 6 14.2976 9.0211 1.0306 21 1 13.6305 9.8693 0.9881 22 6 15.6492 9.2125 1.2901 23 7 16.4609 8.1804 1.3424 24 14 16.3124 10.9372 1.5646 25 1 16.2421 11.2703 3.0100 26 1 17.7244 11.0029 1.1095 27 1 15.4978 11.9095 0.7924 28 6 9.9201 4.9035 0.1236 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.7282 3.2886 0.8912 37 1 3.7289 3.2892 -0.8888 38 1 5.8993 4.6151 0.0009 39 1 8.0988 3.0826 -0.8880 40 1 8.0981 3.0830 0.8919 41 1 6.9697 5.8616 -1.3758 42 1 8.4051 5.1458 -2.1501 43 1 8.5165 7.6076 -2.2702 44 1 8.3424 7.7153 -0.5013 45 1 10.6230 6.3390 -1.9926 46 1 10.7206 7.9094 -1.1607 47 1 12.1514 5.5719 1.2425 48 1 12.4642 5.7294 -0.5026 49 1 14.4102 6.9935 0.8673 50 1 17.4044 8.3141 1.5239 51 1 10.3070 4.3199 -0.7118 52 1 10.1722 4.4073 1.0608 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714030595.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:46 Heat of formation + Delta-G solvation = -155.672932 kcal Electronic energy + Delta-G solvation = -29106.362382 eV Core-core repulsion = 24911.223727 eV Total energy + Delta-G solvation = -4195.138655 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.06385 -40.54263 -39.37213 -38.66443 -36.44896 -35.80889 -34.57595 -34.06325 -33.22353 -32.40649 -29.67261 -28.91740 -27.00150 -26.49598 -25.93021 -23.98672 -22.83869 -22.48552 -21.61182 -20.95309 -20.61539 -19.84631 -18.25414 -17.89947 -17.71181 -17.50589 -16.74061 -16.58674 -16.48395 -16.30616 -16.25429 -15.73501 -15.60020 -15.32945 -15.15712 -14.91339 -14.67480 -14.50396 -14.28407 -13.92349 -13.64862 -13.47885 -13.37178 -13.09049 -13.04114 -12.95365 -12.88883 -12.83974 -12.63365 -12.40666 -12.12104 -12.03498 -11.82617 -11.78113 -11.61329 -11.57507 -11.32656 -11.24887 -10.89540 -10.66665 -10.22433 -10.11055 -9.98141 -9.17298 -8.45308 -5.93863 1.38519 1.42050 1.54653 1.57586 1.80756 2.07230 2.29230 2.75102 3.03197 3.21737 3.40397 3.69601 3.80323 3.83817 3.92188 4.04483 4.12403 4.21792 4.26292 4.30183 4.30900 4.39425 4.42901 4.43855 4.50633 4.52349 4.57049 4.58352 4.65846 4.66061 4.73504 4.81620 4.85450 4.96095 5.06060 5.10431 5.17223 5.20403 5.23900 5.30393 5.35789 5.39638 5.42229 5.52823 5.92041 6.11006 6.11857 6.27715 6.55832 6.62320 7.14506 7.23088 7.58347 8.14119 8.72178 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.040117 B = 0.001431 C = 0.001410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.789591 B =19567.051342 C =19849.316511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C 0.056 3.944 4 O -0.403 6.403 5 C 0.045 3.955 6 C 0.508 3.492 7 O -0.578 6.578 8 N -0.710 5.710 9 C 0.135 3.865 10 C -0.082 4.082 11 H 0.088 0.912 12 C -0.107 4.107 13 C -0.107 4.107 14 C 0.050 3.950 15 N -0.529 5.529 16 C 0.057 3.943 17 C 0.442 3.558 18 O -0.612 6.612 19 N -0.575 5.575 20 C -0.332 4.332 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.922 5.922 24 Si 0.992 3.008 25 H -0.271 1.271 26 H -0.272 1.272 27 H -0.272 1.272 28 C 0.060 3.940 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.418 0.582 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.060 0.940 45 H 0.027 0.973 46 H 0.058 0.942 47 H 0.109 0.891 48 H 0.063 0.937 49 H 0.395 0.605 50 H 0.277 0.723 51 H 0.041 0.959 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.376 -12.229 -4.795 31.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C -0.020 4.020 4 O -0.323 6.323 5 C -0.034 4.034 6 C 0.294 3.706 7 O -0.457 6.457 8 N -0.365 5.365 9 C 0.011 3.989 10 C -0.101 4.101 11 H 0.106 0.894 12 C -0.145 4.145 13 C -0.145 4.145 14 C -0.077 4.077 15 N -0.254 5.254 16 C -0.075 4.075 17 C 0.230 3.770 18 O -0.498 6.498 19 N -0.213 5.213 20 C -0.462 4.462 21 H 0.097 0.903 22 C -0.212 4.212 23 N -0.563 5.563 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.068 4.068 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.256 0.744 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.046 0.954 46 H 0.076 0.924 47 H 0.127 0.873 48 H 0.081 0.919 49 H 0.229 0.771 50 H 0.086 0.914 51 H 0.059 0.941 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -28.402 -12.285 -4.424 31.260 hybrid contribution 1.416 0.544 -0.359 1.558 sum -26.987 -11.741 -4.783 29.816 Atomic orbital electron populations 1.21670 0.92992 1.02810 1.02736 1.21487 0.97022 0.95429 1.02525 1.22815 0.78849 0.98552 1.01764 1.87967 1.21536 1.26980 1.95803 1.22345 0.89012 0.86632 1.05394 1.20899 0.90173 0.83994 0.75497 1.90722 1.75843 1.28680 1.50476 1.45736 1.06688 1.09165 1.74878 1.21190 0.79203 0.96551 1.01982 1.21263 0.94187 0.94765 0.99920 0.89371 1.21640 1.01349 0.95019 0.96465 1.21489 0.92911 0.98013 1.02050 1.22191 0.98274 0.98772 0.88485 1.61438 1.09933 1.18864 1.35151 1.21717 0.89282 0.93678 1.02778 1.20746 0.82181 0.91843 0.82273 1.90456 1.57736 1.44483 1.57100 1.41941 1.07475 1.08833 1.63035 1.19664 0.93181 0.85958 1.47352 0.90259 1.26018 0.95590 1.03108 0.96492 1.69677 1.05515 1.31720 1.49392 0.84944 0.77504 0.77302 0.78689 1.19688 1.19630 1.19703 1.22104 0.94386 0.88410 1.01854 0.91706 0.91765 0.91707 0.92145 0.92209 0.91596 0.91489 0.87363 0.87185 0.74432 0.91935 0.91967 0.89308 0.91834 0.90536 0.92089 0.95450 0.92377 0.87332 0.91904 0.77133 0.91372 0.94086 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.91 71.98 0.71 -0.27 16 2 C -0.13 -1.46 6.30 30.59 0.19 -1.27 16 3 C 0.06 0.62 5.94 71.98 0.43 1.04 16 4 O -0.40 -7.54 9.88 -129.94 -1.28 -8.82 16 5 C 0.05 0.54 6.42 71.24 0.46 1.00 16 6 C 0.51 9.75 7.91 87.66 0.69 10.44 16 7 O -0.58 -17.73 16.50 16.02 0.26 -17.47 16 8 N -0.71 -9.69 5.31 -463.07 -2.46 -12.15 16 9 C 0.14 2.30 5.07 86.38 0.44 2.73 16 10 C -0.08 -1.44 2.39 -10.74 -0.03 -1.47 16 11 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 12 C -0.11 -1.74 5.13 30.68 0.16 -1.59 16 13 C -0.11 -2.46 6.09 30.65 0.19 -2.27 16 14 C 0.05 1.57 5.11 86.32 0.44 2.01 16 15 N -0.53 -16.56 4.39 -900.92 -3.96 -20.52 16 16 C 0.06 1.97 5.45 85.56 0.47 2.44 16 17 C 0.44 21.04 7.46 87.66 0.65 21.70 16 18 O -0.61 -33.40 13.92 -3.06 -0.04 -33.44 16 19 N -0.58 -29.64 5.29 -306.97 -1.62 -31.27 16 20 C -0.33 -18.88 9.68 84.04 0.81 -18.07 16 21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 22 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 23 N -0.92 -50.02 13.05 21.66 0.28 -49.74 16 24 Si 0.99 42.98 29.55 68.60 2.03 45.01 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 28 C 0.06 1.37 4.74 86.33 0.41 1.78 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.42 2.94 7.67 -92.71 -0.71 2.23 16 39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.09 0.96 7.25 -2.39 -0.02 0.94 16 42 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.06 2.34 5.80 -2.39 -0.01 2.33 16 47 H 0.11 3.35 7.98 -2.39 -0.02 3.33 16 48 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 49 H 0.40 19.44 7.90 -92.71 -0.73 18.70 16 50 H 0.28 14.08 8.31 -92.70 -0.77 13.31 16 51 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.08 1.78 8.01 -2.39 -0.02 1.76 16 Total: -1.00 -77.95 418.92 -0.83 -78.79 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: -0.53 Total: 31.60 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 6.49 Total: 18.01 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -7.76 Total: -113.68 kcal Atomic # 8 Polarization: -58.66 SS G_CDS: -1.06 Total: -59.72 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -77.95 -0.83 -78.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714030595.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.887 kcal (2) G-P(sol) polarization free energy of solvation -77.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds