Wall clock time and date at job start Wed Apr 1 2020 00:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47669 * 2 1 4 4 O 1.42897 * 109.46848 * 120.00320 * 2 1 3 5 5 C 1.42905 * 114.00262 * 149.99810 * 4 2 1 6 6 C 1.50697 * 109.47007 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00521 * 359.72812 * 6 5 4 8 8 N 1.34784 * 119.99774 * 179.97438 * 6 5 4 9 9 C 1.46927 * 120.62699 * 359.44533 * 8 6 5 10 10 C 1.52755 * 109.00696 * 233.58141 * 9 8 6 11 11 C 1.53035 * 109.38924 * 305.59167 * 10 9 8 12 12 C 1.53044 * 109.53745 * 61.23716 * 11 10 9 13 13 H 1.09005 * 109.51719 * 58.60566 * 12 11 10 14 14 C 1.50696 * 109.49925 * 178.68342 * 12 11 10 15 15 O 1.21282 * 120.00111 * 359.84250 * 14 12 11 16 16 N 1.34772 * 120.00118 * 179.83741 * 14 12 11 17 17 C 1.46504 * 120.00252 * 179.97438 * 16 14 12 18 18 C 1.53003 * 109.47019 * 180.02562 * 17 16 14 19 19 N 1.46497 * 109.46767 * 180.02562 * 18 17 16 20 20 C 1.36939 * 120.00271 * 180.02562 * 19 18 17 21 21 H 1.08002 * 119.99207 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00566 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00270 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99707 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46955 * 90.00538 * 24 22 20 26 26 H 1.48502 * 109.46968 * 210.00207 * 24 22 20 27 27 H 1.48493 * 109.47320 * 330.00273 * 24 22 20 28 28 C 1.46923 * 120.63216 * 179.72717 * 8 6 5 29 29 H 1.08999 * 109.46931 * 300.00174 * 1 2 3 30 30 H 1.08998 * 109.46340 * 59.99661 * 1 2 3 31 31 H 1.08999 * 109.47039 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47319 * 239.99571 * 2 1 3 33 33 H 1.09004 * 109.47100 * 59.99437 * 3 2 1 34 34 H 1.08995 * 109.47407 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.46991 * 300.00393 * 3 2 1 36 36 H 1.09001 * 109.46781 * 60.00188 * 5 4 2 37 37 H 1.08993 * 109.47173 * 299.99979 * 5 4 2 38 38 H 1.09000 * 109.58817 * 353.42412 * 9 8 6 39 39 H 1.09005 * 109.58520 * 113.84651 * 9 8 6 40 40 H 1.09008 * 109.56349 * 185.55747 * 10 9 8 41 41 H 1.09004 * 109.38523 * 65.52320 * 10 9 8 42 42 H 1.09005 * 109.46064 * 301.22095 * 11 10 9 43 43 H 1.08997 * 109.46778 * 181.26425 * 11 10 9 44 44 H 0.97000 * 120.00246 * 0.02562 * 16 14 12 45 45 H 1.08996 * 109.46958 * 300.00494 * 17 16 14 46 46 H 1.08999 * 109.46514 * 60.00745 * 17 16 14 47 47 H 1.08996 * 109.47084 * 300.00274 * 18 17 16 48 48 H 1.08999 * 109.46992 * 60.00888 * 18 17 16 49 49 H 0.96999 * 120.00338 * 359.97438 * 19 18 17 50 50 H 0.97000 * 120.00358 * 179.97438 * 23 22 20 51 51 H 1.08997 * 109.58570 * 246.16095 * 28 8 6 52 52 H 1.09000 * 109.58284 * 6.44197 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.2660 -1.3246 0.9886 6 6 3.6697 -1.9980 2.2749 7 8 2.9521 -1.9233 3.2498 8 7 4.8308 -2.6791 2.3434 9 6 5.7074 -2.7841 1.1690 10 6 6.0093 -4.2578 0.9037 11 6 6.5787 -4.8962 2.1726 12 6 5.5453 -4.8081 3.2980 13 1 4.6299 -5.3149 2.9924 14 6 6.0944 -5.4656 4.5378 15 8 7.2021 -5.9592 4.5225 16 7 5.3546 -5.5051 5.6636 17 6 5.8882 -6.1449 6.8687 18 6 4.8559 -6.0532 7.9944 19 7 5.3897 -6.6924 9.1996 20 6 4.6377 -6.7334 10.3433 21 1 3.6512 -6.2941 10.3568 22 6 5.1437 -7.3386 11.4854 23 7 4.4210 -7.3775 12.5848 24 14 6.8503 -8.0978 11.4622 25 1 7.8519 -7.0763 11.8606 26 1 6.8987 -9.2362 12.4145 27 1 7.1571 -8.5843 10.0931 28 6 5.2409 -3.3358 3.5921 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 4.0200 -0.5875 0.7126 37 1 3.1809 -2.0708 0.1987 38 1 5.2088 -2.3525 0.3011 39 1 6.6393 -2.2517 1.3599 40 1 6.7368 -4.3418 0.0962 41 1 5.0899 -4.7700 0.6198 42 1 7.4849 -4.3682 2.4696 43 1 6.8155 -5.9423 1.9782 44 1 4.4685 -5.1106 5.6758 45 1 6.1042 -7.1924 6.6587 46 1 6.8043 -5.6388 7.1733 47 1 4.6395 -5.0058 8.2045 48 1 3.9400 -6.5595 7.6895 49 1 6.2756 -7.0873 9.1874 50 1 4.7744 -7.8007 13.3828 51 1 6.1338 -2.8493 3.9846 52 1 4.4355 -3.2660 4.3232 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714314337.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:55 Heat of formation + Delta-G solvation = -110.758870 kcal Electronic energy + Delta-G solvation = -29782.336704 eV Core-core repulsion = 25589.145669 eV Total energy + Delta-G solvation = -4193.191035 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.94416 -39.77164 -38.59572 -37.36114 -35.86877 -34.00353 -33.55053 -33.12714 -32.07111 -31.26094 -28.73861 -28.08433 -27.64167 -25.53734 -24.50704 -23.24916 -21.85160 -21.76872 -21.46326 -20.12768 -19.56367 -18.00395 -17.72231 -17.35767 -16.84159 -16.60149 -16.21241 -15.75357 -15.66277 -15.14524 -14.88610 -14.83362 -14.46856 -14.29566 -13.98483 -13.95378 -13.72961 -13.60120 -13.41673 -13.25009 -12.97931 -12.88979 -12.65005 -12.62272 -12.45323 -11.96813 -11.92649 -11.55372 -11.50776 -11.48826 -11.37461 -11.21982 -11.10029 -10.91233 -10.84501 -10.19154 -10.15838 -10.15287 -9.83784 -9.60830 -9.13761 -9.04763 -8.88969 -7.29221 -5.78576 -3.16070 2.12797 2.20263 2.60303 3.11722 3.29872 3.38863 3.42283 3.46419 3.99521 4.20484 4.31349 4.40460 4.42631 4.48272 4.51857 4.54864 4.58400 4.65669 4.68457 4.70382 4.82362 4.96505 5.10622 5.12224 5.19979 5.24286 5.30114 5.32681 5.36611 5.37537 5.38653 5.45715 5.50552 5.62360 5.65548 5.69840 5.74542 5.74881 5.91659 5.93749 5.97625 6.37010 6.59906 6.60986 6.62151 6.90257 7.48778 7.75871 7.95196 8.17702 8.39344 9.17095 9.89221 10.07531 11.39260 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014533 B = 0.001932 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.168338 B =14486.644285 C =16106.529211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.177 4.177 4 O -0.357 6.357 5 C 0.047 3.953 6 C 0.516 3.484 7 O -0.511 6.511 8 N -0.612 5.612 9 C 0.103 3.897 10 C -0.136 4.136 11 C -0.100 4.100 12 C -0.122 4.122 13 H 0.102 0.898 14 C 0.518 3.482 15 O -0.539 6.539 16 N -0.721 5.721 17 C 0.107 3.893 18 C 0.147 3.853 19 N -0.752 5.752 20 C -0.248 4.248 21 H 0.092 0.908 22 C 0.007 3.993 23 N -0.931 5.931 24 Si 0.885 3.115 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.276 1.276 28 C 0.122 3.878 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.403 0.597 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.034 0.966 48 H 0.033 0.967 49 H 0.363 0.637 50 H 0.260 0.740 51 H 0.077 0.923 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.591 15.159 -35.744 38.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.022 3.978 3 C -0.234 4.234 4 O -0.276 6.276 5 C -0.033 4.033 6 C 0.303 3.697 7 O -0.385 6.385 8 N -0.348 5.348 9 C -0.020 4.020 10 C -0.174 4.174 11 C -0.138 4.138 12 C -0.144 4.144 13 H 0.120 0.880 14 C 0.303 3.697 15 O -0.416 6.416 16 N -0.372 5.372 17 C -0.017 4.017 18 C 0.020 3.980 19 N -0.399 5.399 20 C -0.378 4.378 21 H 0.109 0.891 22 C -0.189 4.189 23 N -0.579 5.579 24 Si 0.715 3.285 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.202 1.202 28 C 0.000 4.000 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.237 0.763 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.052 0.948 48 H 0.051 0.949 49 H 0.196 0.804 50 H 0.070 0.930 51 H 0.095 0.905 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.507 14.893 -34.854 37.906 hybrid contribution 0.991 -0.462 -0.140 1.102 sum 0.484 14.431 -34.994 37.856 Atomic orbital electron populations 1.21861 0.93100 1.03032 1.02775 1.22189 0.95506 0.92472 0.87652 1.22321 1.01434 0.96705 1.02977 1.88090 1.34423 1.69667 1.35378 1.22250 0.88389 0.97005 0.95681 1.20272 0.80543 0.78967 0.89953 1.90770 1.51140 1.59133 1.37429 1.48009 1.20827 1.53231 1.12752 1.21769 0.94887 0.97719 0.87575 1.21890 1.02082 0.94990 0.98464 1.21337 0.97433 1.02575 0.92481 1.21724 1.01363 0.96650 0.94666 0.87981 1.20306 0.85394 0.79843 0.84170 1.90713 1.19883 1.46744 1.84212 1.45982 1.20352 1.59253 1.11626 1.21617 0.98059 0.98008 0.83992 1.20744 0.94374 0.97148 0.85775 1.42524 1.18405 1.69915 1.09015 1.19021 0.99629 1.32005 0.87147 0.89056 1.24673 0.98006 1.00633 0.95638 1.69700 1.37224 1.49277 1.01692 0.86539 0.85535 0.79219 0.77208 1.20936 1.21599 1.20222 1.21529 1.01945 0.90064 0.86492 0.91447 0.91075 0.91800 0.92074 0.91433 0.92542 0.91425 0.90339 0.90260 0.89786 0.90615 0.89868 0.91194 0.90692 0.90422 0.76285 0.91330 0.91272 0.94769 0.94899 0.80423 0.92954 0.90479 0.88054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.56 37.16 0.36 -0.49 16 2 C 0.08 0.48 3.34 -26.73 -0.09 0.39 16 3 C -0.18 -0.89 9.53 37.16 0.35 -0.53 16 4 O -0.36 -3.37 9.52 -55.14 -0.52 -3.90 16 5 C 0.05 0.31 4.58 36.00 0.16 0.48 16 6 C 0.52 5.14 7.78 -10.98 -0.09 5.06 16 7 O -0.51 -7.56 15.91 -14.35 -0.23 -7.79 16 8 N -0.61 -4.74 2.98 -173.03 -0.52 -5.25 16 9 C 0.10 0.45 6.31 -3.93 -0.02 0.42 16 10 C -0.14 -0.63 6.06 -26.84 -0.16 -0.79 16 11 C -0.10 -0.77 4.46 -26.69 -0.12 -0.89 16 12 C -0.12 -1.10 2.68 -91.65 -0.25 -1.34 16 13 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 14 C 0.52 6.65 7.16 -10.99 -0.08 6.57 16 15 O -0.54 -8.91 15.98 5.56 0.09 -8.82 16 16 N -0.72 -9.32 5.46 -60.29 -0.33 -9.65 16 17 C 0.11 1.73 5.79 -4.04 -0.02 1.71 16 18 C 0.15 2.80 6.37 -4.04 -0.03 2.78 16 19 N -0.75 -18.13 5.41 -59.91 -0.32 -18.45 16 20 C -0.25 -7.13 10.47 -15.06 -0.16 -7.29 16 21 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 22 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 23 N -0.93 -29.50 13.97 55.49 0.78 -28.73 16 24 Si 0.89 22.41 27.74 -169.99 -4.71 17.69 16 25 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 28 C 0.12 1.10 5.57 -3.71 -0.02 1.08 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.25 7.79 -51.93 -0.40 -0.16 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.26 7.87 -51.93 -0.41 -0.15 16 35 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.08 0.35 7.69 -51.93 -0.40 -0.05 16 37 H 0.08 0.33 7.61 -51.93 -0.40 -0.06 16 38 H 0.08 0.17 5.94 -51.93 -0.31 -0.14 16 39 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 0.25 8.14 -51.92 -0.42 -0.17 16 41 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 43 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 44 H 0.40 4.39 8.02 -40.82 -0.33 4.07 16 45 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 47 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.36 8.57 5.53 -40.82 -0.23 8.35 16 50 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 51 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 52 H 0.10 1.05 6.61 -51.93 -0.34 0.71 16 LS Contribution 416.46 15.07 6.28 6.28 Total: -1.00 -37.68 416.46 -8.91 -46.60 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -9.16 Total: 4.77 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -0.25 Total: 7.25 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: -0.39 Total: -62.09 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.66 Total: -20.50 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.71 Total: 17.69 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -37.68 -8.91 -46.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714314337.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.160 kcal (2) G-P(sol) polarization free energy of solvation -37.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds