Wall clock time and date at job start Wed Apr 1 2020 00:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47669 * 2 1 4 4 O 1.42897 * 109.46848 * 120.00320 * 2 1 3 5 5 C 1.42905 * 114.00262 * 149.99810 * 4 2 1 6 6 C 1.50697 * 109.47007 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00521 * 359.72812 * 6 5 4 8 8 N 1.34784 * 119.99774 * 179.97438 * 6 5 4 9 9 C 1.46927 * 120.62699 * 359.44533 * 8 6 5 10 10 C 1.52755 * 109.00696 * 233.58141 * 9 8 6 11 11 C 1.53035 * 109.38924 * 305.59167 * 10 9 8 12 12 C 1.53044 * 109.53745 * 61.23716 * 11 10 9 13 13 H 1.09005 * 109.51719 * 58.60566 * 12 11 10 14 14 C 1.50696 * 109.49925 * 178.68342 * 12 11 10 15 15 O 1.21282 * 120.00111 * 359.84250 * 14 12 11 16 16 N 1.34772 * 120.00118 * 179.83741 * 14 12 11 17 17 C 1.46504 * 120.00252 * 179.97438 * 16 14 12 18 18 C 1.53003 * 109.47019 * 180.02562 * 17 16 14 19 19 N 1.46497 * 109.46767 * 180.02562 * 18 17 16 20 20 C 1.36939 * 120.00271 * 180.02562 * 19 18 17 21 21 H 1.08002 * 119.99207 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00566 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00270 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99707 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46955 * 90.00538 * 24 22 20 26 26 H 1.48502 * 109.46968 * 210.00207 * 24 22 20 27 27 H 1.48493 * 109.47320 * 330.00273 * 24 22 20 28 28 C 1.46923 * 120.63216 * 179.72717 * 8 6 5 29 29 H 1.08999 * 109.46931 * 300.00174 * 1 2 3 30 30 H 1.08998 * 109.46340 * 59.99661 * 1 2 3 31 31 H 1.08999 * 109.47039 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47319 * 239.99571 * 2 1 3 33 33 H 1.09004 * 109.47100 * 59.99437 * 3 2 1 34 34 H 1.08995 * 109.47407 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.46991 * 300.00393 * 3 2 1 36 36 H 1.09001 * 109.46781 * 60.00188 * 5 4 2 37 37 H 1.08993 * 109.47173 * 299.99979 * 5 4 2 38 38 H 1.09000 * 109.58817 * 353.42412 * 9 8 6 39 39 H 1.09005 * 109.58520 * 113.84651 * 9 8 6 40 40 H 1.09008 * 109.56349 * 185.55747 * 10 9 8 41 41 H 1.09004 * 109.38523 * 65.52320 * 10 9 8 42 42 H 1.09005 * 109.46064 * 301.22095 * 11 10 9 43 43 H 1.08997 * 109.46778 * 181.26425 * 11 10 9 44 44 H 0.97000 * 120.00246 * 0.02562 * 16 14 12 45 45 H 1.08996 * 109.46958 * 300.00494 * 17 16 14 46 46 H 1.08999 * 109.46514 * 60.00745 * 17 16 14 47 47 H 1.08996 * 109.47084 * 300.00274 * 18 17 16 48 48 H 1.08999 * 109.46992 * 60.00888 * 18 17 16 49 49 H 0.96999 * 120.00338 * 359.97438 * 19 18 17 50 50 H 0.97000 * 120.00358 * 179.97438 * 23 22 20 51 51 H 1.08997 * 109.58570 * 246.16095 * 28 8 6 52 52 H 1.09000 * 109.58284 * 6.44197 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.2660 -1.3246 0.9886 6 6 3.6697 -1.9980 2.2749 7 8 2.9521 -1.9233 3.2498 8 7 4.8308 -2.6791 2.3434 9 6 5.7074 -2.7841 1.1690 10 6 6.0093 -4.2578 0.9037 11 6 6.5787 -4.8962 2.1726 12 6 5.5453 -4.8081 3.2980 13 1 4.6299 -5.3149 2.9924 14 6 6.0944 -5.4656 4.5378 15 8 7.2021 -5.9592 4.5225 16 7 5.3546 -5.5051 5.6636 17 6 5.8882 -6.1449 6.8687 18 6 4.8559 -6.0532 7.9944 19 7 5.3897 -6.6924 9.1996 20 6 4.6377 -6.7334 10.3433 21 1 3.6512 -6.2941 10.3568 22 6 5.1437 -7.3386 11.4854 23 7 4.4210 -7.3775 12.5848 24 14 6.8503 -8.0978 11.4622 25 1 7.8519 -7.0763 11.8606 26 1 6.8987 -9.2362 12.4145 27 1 7.1571 -8.5843 10.0931 28 6 5.2409 -3.3358 3.5921 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 4.0200 -0.5875 0.7126 37 1 3.1809 -2.0708 0.1987 38 1 5.2088 -2.3525 0.3011 39 1 6.6393 -2.2517 1.3599 40 1 6.7368 -4.3418 0.0962 41 1 5.0899 -4.7700 0.6198 42 1 7.4849 -4.3682 2.4696 43 1 6.8155 -5.9423 1.9782 44 1 4.4685 -5.1106 5.6758 45 1 6.1042 -7.1924 6.6587 46 1 6.8043 -5.6388 7.1733 47 1 4.6395 -5.0058 8.2045 48 1 3.9400 -6.5595 7.6895 49 1 6.2756 -7.0873 9.1874 50 1 4.7744 -7.8007 13.3828 51 1 6.1338 -2.8493 3.9846 52 1 4.4355 -3.2660 4.3232 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714314337.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:55 Heat of formation + Delta-G solvation = -138.469062 kcal Electronic energy + Delta-G solvation = -29783.538308 eV Core-core repulsion = 25589.145669 eV Total energy + Delta-G solvation = -4194.392639 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.70372 -40.70278 -39.16633 -38.13781 -37.43784 -35.59387 -34.25838 -33.61534 -33.52304 -32.48555 -29.89901 -29.07174 -28.04293 -26.24612 -25.59487 -24.59631 -23.20310 -22.46066 -22.24373 -21.14382 -20.16615 -19.86174 -18.57744 -18.09565 -17.65556 -17.22439 -17.19326 -16.75258 -16.62648 -16.31308 -15.89478 -15.72127 -15.64921 -15.37116 -15.03034 -14.92883 -14.67734 -14.63788 -14.44603 -14.08877 -13.76024 -13.63392 -13.47367 -13.42470 -13.20455 -13.04318 -12.87197 -12.74384 -12.64323 -12.52531 -12.34129 -12.11429 -11.98482 -11.96355 -11.84659 -11.66048 -11.61555 -11.08937 -11.06214 -10.74684 -10.62434 -10.21104 -9.77853 -9.39389 -8.07064 -5.43153 1.37131 1.37512 1.39899 1.47086 1.52768 1.69675 2.05550 2.45048 2.83527 3.24196 3.44897 3.51196 3.70023 3.74238 3.75873 3.92401 4.02215 4.02943 4.09314 4.11330 4.15957 4.19693 4.23176 4.29442 4.32683 4.46822 4.51051 4.58109 4.70134 4.75346 4.76845 4.82466 4.90215 4.93484 4.96253 4.96781 5.04702 5.05668 5.17207 5.29682 5.31571 5.35126 5.38958 5.40933 5.69871 6.14158 6.15507 6.36039 6.42638 7.00741 7.08426 7.11594 7.74525 7.93362 9.13743 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014533 B = 0.001932 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.168338 B =14486.644285 C =16106.529211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.074 3.926 3 C -0.175 4.175 4 O -0.397 6.397 5 C 0.047 3.953 6 C 0.508 3.492 7 O -0.573 6.573 8 N -0.605 5.605 9 C 0.097 3.903 10 C -0.127 4.127 11 C -0.100 4.100 12 C -0.108 4.108 13 H 0.113 0.887 14 C 0.518 3.482 15 O -0.575 6.575 16 N -0.715 5.715 17 C 0.123 3.877 18 C 0.148 3.852 19 N -0.757 5.757 20 C -0.242 4.242 21 H 0.060 0.940 22 C -0.060 4.060 23 N -0.980 5.980 24 Si 0.956 3.044 25 H -0.277 1.277 26 H -0.292 1.292 27 H -0.253 1.253 28 C 0.124 3.876 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.413 0.587 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.038 0.962 48 H 0.038 0.962 49 H 0.367 0.633 50 H 0.260 0.740 51 H 0.076 0.924 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.000 15.605 -39.780 42.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.017 3.983 3 C -0.232 4.232 4 O -0.316 6.316 5 C -0.032 4.032 6 C 0.298 3.702 7 O -0.452 6.452 8 N -0.339 5.339 9 C -0.024 4.024 10 C -0.165 4.165 11 C -0.138 4.138 12 C -0.130 4.130 13 H 0.131 0.869 14 C 0.305 3.695 15 O -0.454 6.454 16 N -0.367 5.367 17 C -0.002 4.002 18 C 0.022 3.978 19 N -0.403 5.403 20 C -0.372 4.372 21 H 0.078 0.922 22 C -0.252 4.252 23 N -0.629 5.629 24 Si 0.783 3.217 25 H -0.203 1.203 26 H -0.219 1.219 27 H -0.178 1.178 28 C 0.000 4.000 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.105 0.895 40 H 0.126 0.874 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.250 0.750 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.201 0.799 50 H 0.069 0.931 51 H 0.094 0.906 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.098 15.360 -38.985 41.916 hybrid contribution 0.429 -0.545 1.067 1.273 sum 1.527 14.815 -37.918 40.738 Atomic orbital electron populations 1.21906 0.93502 1.02614 1.02933 1.22397 0.95346 0.92927 0.87622 1.22314 1.01882 0.96200 1.02852 1.88056 1.35722 1.70376 1.37491 1.22431 0.88282 0.98222 0.94236 1.21016 0.80228 0.78517 0.90484 1.90741 1.53164 1.61550 1.39717 1.48093 1.20652 1.52009 1.13184 1.22115 0.95131 0.97996 0.87194 1.21870 1.02760 0.94665 0.97223 1.21364 0.96788 1.02275 0.93393 1.21673 1.02049 0.96187 0.93096 0.86949 1.20965 0.84724 0.79020 0.84778 1.90695 1.21496 1.48345 1.84841 1.45902 1.20925 1.59000 1.10907 1.21237 0.96834 0.97944 0.84159 1.20830 0.95238 0.96726 0.85020 1.42508 1.18281 1.70334 1.09206 1.19004 0.98769 1.30655 0.88797 0.92182 1.25524 1.02591 1.01876 0.95236 1.69876 1.39559 1.50945 1.02565 0.85402 0.80038 0.78107 0.78201 1.20261 1.21864 1.17768 1.21378 1.01197 0.90166 0.87251 0.93341 0.88867 0.92489 0.89351 0.93475 0.91794 0.89622 0.87471 0.86963 0.86454 0.89484 0.87386 0.90723 0.91515 0.91470 0.75048 0.91890 0.91776 0.94424 0.94422 0.79927 0.93128 0.90595 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.56 71.98 0.69 -0.87 16 2 C 0.07 0.73 3.34 30.59 0.10 0.83 16 3 C -0.18 -1.42 9.53 71.98 0.69 -0.74 16 4 O -0.40 -7.01 9.52 -129.94 -1.24 -8.25 16 5 C 0.05 0.50 4.58 71.24 0.33 0.83 16 6 C 0.51 9.50 7.78 87.65 0.68 10.19 16 7 O -0.57 -17.40 15.91 16.00 0.25 -17.14 16 8 N -0.60 -8.15 2.98 -819.74 -2.44 -10.59 16 9 C 0.10 0.46 6.31 86.22 0.54 1.01 16 10 C -0.13 -0.69 6.06 30.52 0.19 -0.51 16 11 C -0.10 -1.34 4.46 30.62 0.14 -1.20 16 12 C -0.11 -1.82 2.68 -11.46 -0.03 -1.85 16 13 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 14 C 0.52 12.98 7.16 87.66 0.63 13.61 16 15 O -0.57 -18.72 15.98 -3.04 -0.05 -18.76 16 16 N -0.72 -18.14 5.46 -463.06 -2.53 -20.67 16 17 C 0.12 3.89 5.79 86.38 0.50 4.39 16 18 C 0.15 5.60 6.37 86.38 0.55 6.15 16 19 N -0.76 -36.15 5.41 -343.46 -1.86 -38.01 16 20 C -0.24 -14.06 10.47 84.03 0.88 -13.18 16 21 H 0.06 3.80 8.06 -2.91 -0.02 3.78 16 22 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 23 N -0.98 -63.51 13.97 21.65 0.30 -63.21 16 24 Si 0.96 46.28 27.74 68.60 1.90 48.18 16 25 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 26 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 27 H -0.25 -11.16 6.52 99.48 0.65 -10.52 16 28 C 0.12 2.13 5.57 86.36 0.48 2.62 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.09 0.37 7.79 -2.38 -0.02 0.35 16 33 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.06 0.41 7.87 -2.39 -0.02 0.39 16 35 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.11 0.50 7.69 -2.39 -0.02 0.48 16 37 H 0.11 0.43 7.61 -2.39 -0.02 0.41 16 38 H 0.12 -0.16 5.94 -2.39 -0.01 -0.18 16 39 H 0.09 0.30 8.14 -2.38 -0.02 0.28 16 40 H 0.11 0.15 8.14 -2.38 -0.02 0.13 16 41 H 0.07 0.39 8.14 -2.39 -0.02 0.38 16 42 H 0.07 1.01 8.13 -2.38 -0.02 0.99 16 43 H 0.07 1.06 8.07 -2.39 -0.02 1.04 16 44 H 0.41 8.87 8.02 -92.71 -0.74 8.13 16 45 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.37 16.83 5.53 -92.71 -0.51 16.32 16 50 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 51 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 52 H 0.08 1.77 6.61 -2.39 -0.02 1.75 16 Total: -1.00 -85.42 416.46 0.77 -84.65 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: -0.40 Total: 25.70 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 6.83 Total: 18.11 kcal Atomic # 7 Polarization: -125.96 SS G_CDS: -6.52 Total: -132.48 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -1.03 Total: -44.16 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.90 Total: 48.18 kcal Total: -85.42 0.77 -84.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714314337.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.818 kcal (2) G-P(sol) polarization free energy of solvation -85.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds