Wall clock time and date at job start Wed Apr 1 2020 00:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46952 * 2 1 4 4 O 1.42899 * 109.47113 * 180.02562 * 3 2 1 5 5 C 1.42903 * 113.99629 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.46878 * 179.97438 * 5 4 3 7 7 O 1.21280 * 119.99781 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99795 * 179.97438 * 6 5 4 9 9 C 1.46921 * 120.63059 * 359.72315 * 8 6 5 10 10 C 1.52760 * 109.00903 * 233.58159 * 9 8 6 11 11 C 1.53040 * 109.38219 * 305.58856 * 10 9 8 12 12 C 1.53042 * 109.53627 * 61.23932 * 11 10 9 13 13 H 1.09000 * 109.52420 * 58.60476 * 12 11 10 14 14 C 1.50703 * 109.49751 * 178.68365 * 12 11 10 15 15 O 1.21279 * 119.99864 * 359.83652 * 14 12 11 16 16 N 1.34779 * 120.00316 * 179.84111 * 14 12 11 17 17 C 1.46493 * 120.00527 * 179.97438 * 16 14 12 18 18 C 1.53002 * 109.47425 * 179.97438 * 17 16 14 19 19 N 1.46499 * 109.47012 * 180.02562 * 18 17 16 20 20 C 1.36935 * 120.00033 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99749 * 0.02562 * 20 19 18 22 22 C 1.38808 * 120.00178 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00014 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00190 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47369 * 89.99482 * 24 22 20 26 26 H 1.48497 * 109.47339 * 209.99780 * 24 22 20 27 27 H 1.48500 * 109.46832 * 329.99413 * 24 22 20 28 28 C 1.46926 * 120.62707 * 180.02562 * 8 6 5 29 29 H 1.09003 * 109.46805 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47094 * 299.99658 * 1 2 3 31 31 H 1.08995 * 109.47498 * 60.00027 * 1 2 3 32 32 H 1.08997 * 109.47562 * 240.00594 * 2 1 3 33 33 H 1.08998 * 109.47270 * 119.99510 * 2 1 3 34 34 H 1.09007 * 109.46516 * 59.99962 * 3 2 1 35 35 H 1.09004 * 109.47113 * 300.00431 * 3 2 1 36 36 H 1.09002 * 109.47382 * 59.99956 * 5 4 3 37 37 H 1.09001 * 109.46938 * 299.99942 * 5 4 3 38 38 H 1.08996 * 109.58649 * 353.41979 * 9 8 6 39 39 H 1.09004 * 109.58204 * 113.84425 * 9 8 6 40 40 H 1.09000 * 109.56394 * 185.56047 * 10 9 8 41 41 H 1.08995 * 109.36180 * 65.49907 * 10 9 8 42 42 H 1.09001 * 109.46468 * 301.22386 * 11 10 9 43 43 H 1.08997 * 109.46301 * 181.26105 * 11 10 9 44 44 H 0.97001 * 119.99406 * 0.02562 * 16 14 12 45 45 H 1.09003 * 109.46908 * 300.00263 * 17 16 14 46 46 H 1.09008 * 109.47031 * 59.99558 * 17 16 14 47 47 H 1.09001 * 109.46688 * 300.00176 * 18 17 16 48 48 H 1.08998 * 109.46551 * 60.00167 * 18 17 16 49 49 H 0.97005 * 120.00057 * 359.97438 * 19 18 17 50 50 H 0.96996 * 119.99952 * 180.02562 * 23 22 20 51 51 H 1.09005 * 109.58410 * 246.15856 * 28 8 6 52 52 H 1.09001 * 109.58875 * 6.43498 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0501 2.7482 -0.0001 6 6 5.5524 2.6293 -0.0001 7 8 6.0740 1.5343 -0.0011 8 7 6.3162 3.7397 -0.0002 9 6 5.6989 5.0729 -0.0063 10 6 6.2725 5.8815 -1.1686 11 6 7.7998 5.8960 -1.0722 12 6 8.3323 4.4645 -1.1682 13 1 8.0127 4.0193 -2.1104 14 6 9.8379 4.4826 -1.1057 15 8 10.4277 5.5369 -0.9983 16 7 10.5291 3.3273 -1.1693 17 6 11.9927 3.3449 -1.1091 18 6 12.5242 1.9131 -1.2003 19 7 13.9878 1.9308 -1.1396 20 6 14.6900 0.7569 -1.2041 21 1 14.1648 -0.1819 -1.3002 22 6 16.0768 0.7737 -1.1470 23 7 16.7517 -0.3547 -1.2085 24 14 16.9853 2.3975 -0.9815 25 1 17.1699 2.7171 0.4569 26 1 18.3124 2.2915 -1.6393 27 1 16.1957 3.4748 -1.6306 28 6 7.7821 3.6398 -0.0008 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.6765 1.9564 0.8901 35 1 1.6765 1.9565 -0.8900 36 1 3.7288 3.2886 0.8904 37 1 3.7280 3.2896 -0.8896 38 1 4.6202 4.9755 -0.1280 39 1 5.9185 5.5815 0.9325 40 1 5.8955 6.9032 -1.1236 41 1 5.9718 5.4233 -2.1107 42 1 8.0995 6.3317 -0.1191 43 1 8.2095 6.4913 -1.8882 44 1 10.0573 2.4841 -1.2556 45 1 12.3834 3.9316 -1.9405 46 1 12.3123 3.7915 -0.1675 47 1 12.1334 1.3268 -0.3687 48 1 12.2046 1.4663 -2.1418 49 1 14.4596 2.7741 -1.0544 50 1 17.7208 -0.3430 -1.1682 51 1 8.1752 4.0290 0.9384 52 1 8.0773 2.5969 -0.1163 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714316127.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:03 Heat of formation + Delta-G solvation = -113.402694 kcal Electronic energy + Delta-G solvation = -29494.044604 eV Core-core repulsion = 25300.738925 eV Total energy + Delta-G solvation = -4193.305679 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.94216 -39.74567 -38.37820 -37.32726 -35.86960 -34.18566 -33.99344 -33.39965 -32.10071 -31.27033 -29.10061 -28.12914 -26.36928 -25.44740 -24.41933 -23.24884 -22.08181 -21.74879 -21.46191 -20.10939 -19.52365 -18.05356 -17.74287 -17.19092 -16.99677 -16.79338 -16.20111 -15.90172 -15.66673 -15.47209 -14.86743 -14.81676 -14.60655 -14.38931 -14.22968 -13.95486 -13.74175 -13.59810 -13.54748 -13.34839 -12.95403 -12.63273 -12.61319 -12.59669 -12.45466 -11.95726 -11.55734 -11.52521 -11.49788 -11.39165 -11.38666 -11.35474 -11.10222 -10.91300 -10.84490 -10.20437 -10.18543 -10.15805 -9.84158 -9.60832 -9.14231 -9.04847 -8.88963 -7.29205 -5.78607 -3.16090 2.11440 2.19971 2.60040 3.11395 3.28297 3.38867 3.42284 3.46450 3.99461 4.20400 4.33804 4.40557 4.44436 4.48456 4.50697 4.58397 4.59427 4.64700 4.68944 4.79917 4.82379 4.94482 4.96583 4.97248 5.11962 5.21925 5.23515 5.32386 5.37198 5.38268 5.45678 5.50274 5.52455 5.62311 5.64062 5.65476 5.73250 5.74851 5.91438 5.93478 5.97373 6.36976 6.55296 6.59854 6.62102 6.89164 7.48664 7.75009 7.95148 8.17602 8.39351 9.17075 9.89207 10.07532 11.39249 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013668 B = 0.001867 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.069125 B =14994.997239 C =16855.689098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.060 3.940 4 O -0.364 6.364 5 C 0.047 3.953 6 C 0.516 3.484 7 O -0.511 6.511 8 N -0.612 5.612 9 C 0.103 3.897 10 C -0.136 4.136 11 C -0.100 4.100 12 C -0.122 4.122 13 H 0.102 0.898 14 C 0.518 3.482 15 O -0.539 6.539 16 N -0.721 5.721 17 C 0.107 3.893 18 C 0.147 3.853 19 N -0.752 5.752 20 C -0.249 4.249 21 H 0.092 0.908 22 C 0.007 3.993 23 N -0.932 5.932 24 Si 0.885 3.115 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.276 1.276 28 C 0.122 3.878 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.403 0.597 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.034 0.966 48 H 0.033 0.967 49 H 0.363 0.637 50 H 0.260 0.740 51 H 0.077 0.923 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.824 12.620 2.141 38.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.016 4.016 4 O -0.282 6.282 5 C -0.033 4.033 6 C 0.303 3.697 7 O -0.385 6.385 8 N -0.348 5.348 9 C -0.020 4.020 10 C -0.174 4.174 11 C -0.138 4.138 12 C -0.144 4.144 13 H 0.120 0.880 14 C 0.303 3.697 15 O -0.415 6.415 16 N -0.372 5.372 17 C -0.017 4.017 18 C 0.020 3.980 19 N -0.399 5.399 20 C -0.378 4.378 21 H 0.109 0.891 22 C -0.189 4.189 23 N -0.579 5.579 24 Si 0.715 3.285 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.202 1.202 28 C 0.000 4.000 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.237 0.763 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.052 0.948 48 H 0.051 0.949 49 H 0.196 0.804 50 H 0.070 0.930 51 H 0.095 0.905 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -35.943 12.324 2.210 38.061 hybrid contribution 0.435 1.025 -0.006 1.113 sum -35.508 13.349 2.204 37.998 Atomic orbital electron populations 1.21696 0.94592 1.02450 1.01944 1.21460 0.95643 0.95277 1.03857 1.22656 0.80261 0.98500 1.00222 1.88027 1.19736 1.25048 1.95404 1.22207 0.91520 0.87100 1.02429 1.20258 0.88722 0.84098 0.76658 1.90770 1.74298 1.25976 1.47446 1.48003 1.06453 1.05933 1.74407 1.21772 0.97692 0.82730 0.99768 1.21890 0.96184 1.00734 0.98618 1.21338 0.94027 0.94267 1.04198 1.21716 0.92299 0.99120 1.01266 0.87982 1.20308 0.89076 0.83890 0.76444 1.90712 1.71034 1.30623 1.49164 1.45981 1.08045 1.09080 1.74109 1.21616 0.78332 0.99341 1.02387 1.20744 0.85749 0.92173 0.99374 1.42525 1.00424 1.06195 1.90716 1.19023 0.89447 0.86079 1.43280 0.89059 1.24670 0.96069 0.96503 1.01663 1.69704 1.06673 1.24559 1.56965 0.86540 0.79606 0.84369 0.77987 1.20935 1.21599 1.20226 1.21524 0.78853 1.02057 0.97600 0.91847 0.92531 0.92528 0.90849 0.90862 0.93128 0.93128 0.90252 0.90218 0.89766 0.90599 0.89857 0.91193 0.90686 0.90420 0.76286 0.91328 0.91276 0.94768 0.94904 0.80420 0.92958 0.90468 0.88049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.91 37.16 0.37 -0.23 16 2 C -0.12 -0.74 6.30 -26.73 -0.17 -0.91 16 3 C 0.06 0.36 5.94 37.16 0.22 0.58 16 4 O -0.36 -3.49 9.88 -55.14 -0.54 -4.03 16 5 C 0.05 0.32 4.77 36.01 0.17 0.49 16 6 C 0.52 5.14 7.78 -10.98 -0.09 5.06 16 7 O -0.51 -7.57 15.91 -14.35 -0.23 -7.80 16 8 N -0.61 -4.73 2.98 -173.06 -0.52 -5.24 16 9 C 0.10 0.44 6.31 -3.94 -0.02 0.42 16 10 C -0.14 -0.62 6.06 -26.83 -0.16 -0.79 16 11 C -0.10 -0.77 4.46 -26.69 -0.12 -0.89 16 12 C -0.12 -1.10 2.68 -91.67 -0.25 -1.34 16 13 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 14 C 0.52 6.64 7.16 -10.98 -0.08 6.57 16 15 O -0.54 -8.89 15.98 5.56 0.09 -8.80 16 16 N -0.72 -9.32 5.46 -60.29 -0.33 -9.65 16 17 C 0.11 1.73 5.79 -4.04 -0.02 1.70 16 18 C 0.15 2.80 6.37 -4.04 -0.03 2.78 16 19 N -0.75 -18.13 5.41 -59.91 -0.32 -18.45 16 20 C -0.25 -7.14 10.47 -15.06 -0.16 -7.29 16 21 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 22 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 23 N -0.93 -29.50 13.97 55.49 0.78 -28.72 16 24 Si 0.88 22.40 27.74 -169.99 -4.71 17.68 16 25 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 28 C 0.12 1.10 5.57 -3.73 -0.02 1.08 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.08 0.33 7.95 -51.93 -0.41 -0.08 16 37 H 0.08 0.33 7.68 -51.93 -0.40 -0.07 16 38 H 0.08 0.17 5.93 -51.93 -0.31 -0.14 16 39 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 43 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 44 H 0.40 4.39 8.02 -40.82 -0.33 4.06 16 45 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.07 1.17 8.14 -51.92 -0.42 0.74 16 47 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.36 8.57 5.53 -40.82 -0.23 8.35 16 50 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 51 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 52 H 0.10 1.05 6.60 -51.93 -0.34 0.71 16 LS Contribution 417.68 15.07 6.29 6.29 Total: -1.00 -37.71 417.68 -9.16 -46.86 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -9.21 Total: 4.51 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -0.45 Total: 7.34 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -0.39 Total: -62.06 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.68 Total: -20.63 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.71 Total: 17.68 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -37.71 -9.16 -46.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714316127.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.539 kcal (2) G-P(sol) polarization free energy of solvation -37.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds