Wall clock time and date at job start Wed Apr 1 2020 00:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46952 * 2 1 4 4 O 1.42899 * 109.47113 * 180.02562 * 3 2 1 5 5 C 1.42903 * 113.99629 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.46878 * 179.97438 * 5 4 3 7 7 O 1.21280 * 119.99781 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99795 * 179.97438 * 6 5 4 9 9 C 1.46921 * 120.63059 * 359.72315 * 8 6 5 10 10 C 1.52760 * 109.00903 * 233.58159 * 9 8 6 11 11 C 1.53040 * 109.38219 * 305.58856 * 10 9 8 12 12 C 1.53042 * 109.53627 * 61.23932 * 11 10 9 13 13 H 1.09000 * 109.52420 * 58.60476 * 12 11 10 14 14 C 1.50703 * 109.49751 * 178.68365 * 12 11 10 15 15 O 1.21279 * 119.99864 * 359.83652 * 14 12 11 16 16 N 1.34779 * 120.00316 * 179.84111 * 14 12 11 17 17 C 1.46493 * 120.00527 * 179.97438 * 16 14 12 18 18 C 1.53002 * 109.47425 * 179.97438 * 17 16 14 19 19 N 1.46499 * 109.47012 * 180.02562 * 18 17 16 20 20 C 1.36935 * 120.00033 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99749 * 0.02562 * 20 19 18 22 22 C 1.38808 * 120.00178 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00014 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00190 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47369 * 89.99482 * 24 22 20 26 26 H 1.48497 * 109.47339 * 209.99780 * 24 22 20 27 27 H 1.48500 * 109.46832 * 329.99413 * 24 22 20 28 28 C 1.46926 * 120.62707 * 180.02562 * 8 6 5 29 29 H 1.09003 * 109.46805 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47094 * 299.99658 * 1 2 3 31 31 H 1.08995 * 109.47498 * 60.00027 * 1 2 3 32 32 H 1.08997 * 109.47562 * 240.00594 * 2 1 3 33 33 H 1.08998 * 109.47270 * 119.99510 * 2 1 3 34 34 H 1.09007 * 109.46516 * 59.99962 * 3 2 1 35 35 H 1.09004 * 109.47113 * 300.00431 * 3 2 1 36 36 H 1.09002 * 109.47382 * 59.99956 * 5 4 3 37 37 H 1.09001 * 109.46938 * 299.99942 * 5 4 3 38 38 H 1.08996 * 109.58649 * 353.41979 * 9 8 6 39 39 H 1.09004 * 109.58204 * 113.84425 * 9 8 6 40 40 H 1.09000 * 109.56394 * 185.56047 * 10 9 8 41 41 H 1.08995 * 109.36180 * 65.49907 * 10 9 8 42 42 H 1.09001 * 109.46468 * 301.22386 * 11 10 9 43 43 H 1.08997 * 109.46301 * 181.26105 * 11 10 9 44 44 H 0.97001 * 119.99406 * 0.02562 * 16 14 12 45 45 H 1.09003 * 109.46908 * 300.00263 * 17 16 14 46 46 H 1.09008 * 109.47031 * 59.99558 * 17 16 14 47 47 H 1.09001 * 109.46688 * 300.00176 * 18 17 16 48 48 H 1.08998 * 109.46551 * 60.00167 * 18 17 16 49 49 H 0.97005 * 120.00057 * 359.97438 * 19 18 17 50 50 H 0.96996 * 119.99952 * 180.02562 * 23 22 20 51 51 H 1.09005 * 109.58410 * 246.15856 * 28 8 6 52 52 H 1.09001 * 109.58875 * 6.43498 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0501 2.7482 -0.0001 6 6 5.5524 2.6293 -0.0001 7 8 6.0740 1.5343 -0.0011 8 7 6.3162 3.7397 -0.0002 9 6 5.6989 5.0729 -0.0063 10 6 6.2725 5.8815 -1.1686 11 6 7.7998 5.8960 -1.0722 12 6 8.3323 4.4645 -1.1682 13 1 8.0127 4.0193 -2.1104 14 6 9.8379 4.4826 -1.1057 15 8 10.4277 5.5369 -0.9983 16 7 10.5291 3.3273 -1.1693 17 6 11.9927 3.3449 -1.1091 18 6 12.5242 1.9131 -1.2003 19 7 13.9878 1.9308 -1.1396 20 6 14.6900 0.7569 -1.2041 21 1 14.1648 -0.1819 -1.3002 22 6 16.0768 0.7737 -1.1470 23 7 16.7517 -0.3547 -1.2085 24 14 16.9853 2.3975 -0.9815 25 1 17.1699 2.7171 0.4569 26 1 18.3124 2.2915 -1.6393 27 1 16.1957 3.4748 -1.6306 28 6 7.7821 3.6398 -0.0008 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.6765 1.9564 0.8901 35 1 1.6765 1.9565 -0.8900 36 1 3.7288 3.2886 0.8904 37 1 3.7280 3.2896 -0.8896 38 1 4.6202 4.9755 -0.1280 39 1 5.9185 5.5815 0.9325 40 1 5.8955 6.9032 -1.1236 41 1 5.9718 5.4233 -2.1107 42 1 8.0995 6.3317 -0.1191 43 1 8.2095 6.4913 -1.8882 44 1 10.0573 2.4841 -1.2556 45 1 12.3834 3.9316 -1.9405 46 1 12.3123 3.7915 -0.1675 47 1 12.1334 1.3268 -0.3687 48 1 12.2046 1.4663 -2.1418 49 1 14.4596 2.7741 -1.0544 50 1 17.7208 -0.3430 -1.1682 51 1 8.1752 4.0290 0.9384 52 1 8.0773 2.5969 -0.1163 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714316127.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:02 Heat of formation + Delta-G solvation = -141.040692 kcal Electronic energy + Delta-G solvation = -29495.243078 eV Core-core repulsion = 25300.738925 eV Total energy + Delta-G solvation = -4194.504153 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.70322 -40.68894 -38.96415 -38.09406 -37.43661 -35.59359 -34.62533 -34.12376 -33.52277 -32.51663 -29.98808 -29.36916 -26.81635 -26.19525 -25.45398 -24.56882 -23.20307 -22.54916 -22.36865 -21.12481 -20.12111 -19.86006 -18.63769 -18.04762 -17.55340 -17.48228 -17.20333 -16.82260 -16.62163 -16.34075 -16.18316 -15.83305 -15.68441 -15.36632 -15.14688 -14.85748 -14.85309 -14.65645 -14.62786 -14.14521 -13.99460 -13.62297 -13.45934 -13.20513 -13.04836 -13.02625 -12.86498 -12.74242 -12.64245 -12.51821 -12.11361 -11.98579 -11.97992 -11.84625 -11.79618 -11.77802 -11.65590 -11.09386 -11.06096 -10.75532 -10.66063 -10.21019 -9.78240 -9.39312 -8.07026 -5.43114 1.36817 1.37377 1.40006 1.47199 1.52562 1.68992 2.05468 2.45182 2.81265 3.24350 3.44460 3.51140 3.70330 3.74291 3.75945 3.92491 4.02953 4.05215 4.07786 4.13259 4.15940 4.21633 4.24329 4.27120 4.43345 4.46687 4.51064 4.57570 4.59167 4.66771 4.70308 4.76104 4.85398 4.89642 4.96774 5.04099 5.05323 5.17237 5.18607 5.24595 5.29753 5.35396 5.39644 5.41133 5.69886 6.08978 6.15558 6.33547 6.42627 7.00826 7.07651 7.11622 7.74587 7.93446 9.13812 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013668 B = 0.001867 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.069125 B =14994.997239 C =16855.689098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.058 3.942 4 O -0.405 6.405 5 C 0.048 3.952 6 C 0.508 3.492 7 O -0.574 6.574 8 N -0.605 5.605 9 C 0.097 3.903 10 C -0.127 4.127 11 C -0.100 4.100 12 C -0.108 4.108 13 H 0.112 0.888 14 C 0.518 3.482 15 O -0.574 6.574 16 N -0.715 5.715 17 C 0.123 3.877 18 C 0.148 3.852 19 N -0.757 5.757 20 C -0.242 4.242 21 H 0.060 0.940 22 C -0.059 4.059 23 N -0.980 5.980 24 Si 0.956 3.044 25 H -0.277 1.277 26 H -0.292 1.292 27 H -0.253 1.253 28 C 0.124 3.876 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.413 0.587 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.038 0.962 48 H 0.038 0.962 49 H 0.367 0.633 50 H 0.260 0.740 51 H 0.076 0.924 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -39.755 15.757 2.174 42.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.167 4.167 3 C -0.018 4.018 4 O -0.324 6.324 5 C -0.031 4.031 6 C 0.297 3.703 7 O -0.452 6.452 8 N -0.339 5.339 9 C -0.024 4.024 10 C -0.165 4.165 11 C -0.138 4.138 12 C -0.130 4.130 13 H 0.130 0.870 14 C 0.305 3.695 15 O -0.454 6.454 16 N -0.367 5.367 17 C -0.002 4.002 18 C 0.022 3.978 19 N -0.403 5.403 20 C -0.373 4.373 21 H 0.078 0.922 22 C -0.251 4.251 23 N -0.630 5.630 24 Si 0.782 3.218 25 H -0.203 1.203 26 H -0.219 1.219 27 H -0.178 1.178 28 C 0.000 4.000 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.136 0.864 39 H 0.105 0.895 40 H 0.126 0.874 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.250 0.750 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.201 0.799 50 H 0.069 0.931 51 H 0.094 0.906 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -38.958 15.515 2.240 41.994 hybrid contribution 1.269 0.002 -0.013 1.269 sum -37.689 15.518 2.227 40.819 Atomic orbital electron populations 1.21662 0.92924 1.02763 1.02808 1.21499 0.97088 0.95634 1.02435 1.22810 0.78717 0.98400 1.01899 1.87984 1.21647 1.27019 1.95791 1.22397 0.88702 0.86654 1.05339 1.21010 0.90361 0.83514 0.75389 1.90741 1.75575 1.28361 1.50545 1.48087 1.05654 1.07065 1.73095 1.22120 0.99403 0.80630 1.00290 1.21871 0.93401 1.02335 0.98919 1.21364 0.96514 0.92606 1.03340 1.21665 0.89129 1.00505 1.01704 0.86959 1.20967 0.90582 0.82915 0.75031 1.90694 1.72095 1.31813 1.50748 1.45901 1.06777 1.10029 1.74030 1.21236 0.80163 0.96892 1.01882 1.20830 0.83139 0.94302 0.99543 1.42508 1.02361 1.04838 1.90624 1.19006 0.89823 0.86605 1.41850 0.92192 1.25514 0.97074 1.00394 1.02125 1.69880 1.06902 1.27263 1.58912 0.85405 0.77966 0.80148 0.78245 1.20262 1.21864 1.17779 1.21374 0.80267 1.00910 0.97452 0.91890 0.91628 0.91618 0.92312 0.92341 0.91359 0.91307 0.87141 0.86950 0.86413 0.89451 0.87382 0.90738 0.91500 0.91477 0.75049 0.91892 0.91780 0.94421 0.94432 0.79924 0.93132 0.90569 0.89856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.91 71.98 0.71 -0.22 16 2 C -0.13 -1.47 6.30 30.60 0.19 -1.28 16 3 C 0.06 0.57 5.94 71.99 0.43 1.00 16 4 O -0.40 -7.25 9.88 -129.94 -1.28 -8.53 16 5 C 0.05 0.51 4.77 71.24 0.34 0.84 16 6 C 0.51 9.48 7.78 87.66 0.68 10.16 16 7 O -0.57 -17.41 15.91 16.01 0.25 -17.16 16 8 N -0.60 -8.10 2.98 -819.82 -2.44 -10.55 16 9 C 0.10 0.45 6.31 86.22 0.54 1.00 16 10 C -0.13 -0.69 6.06 30.53 0.19 -0.51 16 11 C -0.10 -1.33 4.46 30.62 0.14 -1.20 16 12 C -0.11 -1.81 2.68 -11.48 -0.03 -1.84 16 13 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 14 C 0.52 12.96 7.16 87.66 0.63 13.59 16 15 O -0.57 -18.68 15.98 -3.02 -0.05 -18.73 16 16 N -0.72 -18.13 5.46 -463.06 -2.53 -20.65 16 17 C 0.12 3.89 5.79 86.38 0.50 4.39 16 18 C 0.15 5.60 6.37 86.38 0.55 6.15 16 19 N -0.76 -36.14 5.41 -343.46 -1.86 -38.00 16 20 C -0.24 -14.10 10.47 84.03 0.88 -13.22 16 21 H 0.06 3.79 8.06 -2.91 -0.02 3.77 16 22 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 23 N -0.98 -63.48 13.97 21.65 0.30 -63.18 16 24 Si 0.96 46.24 27.74 68.60 1.90 48.14 16 25 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 26 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 27 H -0.25 -11.16 6.52 99.48 0.65 -10.52 16 28 C 0.12 2.12 5.57 86.35 0.48 2.61 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 35 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 36 H 0.11 0.46 7.95 -2.39 -0.02 0.44 16 37 H 0.11 0.43 7.68 -2.39 -0.02 0.41 16 38 H 0.12 -0.18 5.93 -2.39 -0.01 -0.19 16 39 H 0.09 0.29 8.14 -2.38 -0.02 0.27 16 40 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 43 H 0.07 1.06 8.07 -2.39 -0.02 1.04 16 44 H 0.41 8.86 8.02 -92.71 -0.74 8.12 16 45 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 47 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.37 16.82 5.53 -92.70 -0.51 16.31 16 50 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 51 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 52 H 0.08 1.76 6.60 -2.39 -0.02 1.75 16 Total: -1.00 -85.31 417.68 0.59 -84.71 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: -0.40 Total: 25.55 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 6.70 Total: 18.39 kcal Atomic # 7 Polarization: -125.86 SS G_CDS: -6.52 Total: -132.38 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -1.08 Total: -44.42 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.90 Total: 48.14 kcal Total: -85.31 0.59 -84.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714316127.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.326 kcal (2) G-P(sol) polarization free energy of solvation -85.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds