Wall clock time and date at job start Wed Apr 1 2020 00:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47026 * 2 1 4 4 O 1.42899 * 109.47347 * 119.99896 * 2 1 3 5 5 C 1.42905 * 113.99778 * 89.99741 * 4 2 1 6 6 C 1.52999 * 109.46728 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.46953 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99692 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00146 * 180.02562 * 7 6 5 10 10 C 1.46496 * 119.99875 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.50678 * 34.99479 * 10 9 7 12 12 C 1.53120 * 109.50338 * 274.91673 * 10 9 7 13 13 C 1.53114 * 109.16512 * 182.40571 * 12 10 9 14 14 C 1.53044 * 109.27845 * 57.65211 * 13 12 10 15 15 N 1.46847 * 109.52431 * 300.82443 * 14 13 12 16 16 C 1.46893 * 111.00014 * 185.83665 * 15 14 13 17 17 C 1.50706 * 109.47135 * 293.95308 * 16 15 14 18 18 O 1.21294 * 119.99793 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00120 * 180.02562 * 17 16 15 20 20 C 1.37090 * 120.00162 * 179.97438 * 19 17 16 21 21 H 1.08004 * 120.00089 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00115 * 180.02562 * 20 19 17 23 23 N 1.31412 * 119.99780 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00036 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47533 * 89.99888 * 24 22 20 26 26 H 1.48499 * 109.47166 * 209.99671 * 24 22 20 27 27 H 1.48504 * 109.47229 * 329.99818 * 24 22 20 28 28 C 1.46850 * 111.23178 * 61.71772 * 15 14 13 29 29 H 1.08992 * 109.46809 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46539 * 299.99899 * 1 2 3 31 31 H 1.09001 * 109.47258 * 59.99672 * 1 2 3 32 32 H 1.08999 * 109.47264 * 239.99963 * 2 1 3 33 33 H 1.09008 * 109.47077 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.46958 * 300.00004 * 3 2 1 35 35 H 1.09001 * 109.47379 * 60.00616 * 3 2 1 36 36 H 1.09000 * 109.47187 * 300.00233 * 5 4 2 37 37 H 1.09001 * 109.46558 * 60.00281 * 5 4 2 38 38 H 1.09000 * 109.47486 * 300.00062 * 6 5 4 39 39 H 1.09001 * 109.47362 * 60.00784 * 6 5 4 40 40 H 0.96999 * 120.00043 * 359.97438 * 9 7 6 41 41 H 1.09005 * 109.52352 * 302.31168 * 12 10 9 42 42 H 1.09002 * 109.52153 * 62.50251 * 12 10 9 43 43 H 1.09001 * 109.50659 * 177.59348 * 13 12 10 44 44 H 1.09003 * 109.50556 * 297.71874 * 13 12 10 45 45 H 1.08999 * 109.45817 * 60.83653 * 14 13 12 46 46 H 1.08995 * 109.46154 * 180.80387 * 14 13 12 47 47 H 1.09004 * 109.47143 * 53.95432 * 16 15 14 48 48 H 1.09004 * 109.47357 * 173.95563 * 16 15 14 49 49 H 0.97000 * 119.99366 * 359.97438 * 19 17 16 50 50 H 0.97004 * 119.99579 * 179.97438 * 23 22 20 51 51 H 1.09000 * 109.49443 * 178.27841 * 28 15 14 52 52 H 1.09001 * 109.42793 * 58.31584 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 -2.0782 0.9886 6 6 2.7092 -2.6924 2.2941 7 6 2.9141 -4.1736 2.1061 8 8 2.6768 -4.6872 1.0334 9 7 3.3610 -4.9274 3.1300 10 6 3.5607 -6.3671 2.9470 11 1 3.9098 -6.5601 1.9326 12 6 2.2370 -7.1005 3.1803 13 6 2.4673 -8.6083 3.0463 14 6 3.5391 -9.0466 4.0470 15 7 4.7858 -8.3173 3.7817 16 6 5.8761 -8.8115 4.6329 17 6 5.5731 -8.4911 6.0740 18 8 4.5492 -7.9087 6.3634 19 7 6.4397 -8.8516 7.0412 20 6 6.1642 -8.5596 8.3520 21 1 5.2526 -8.0411 8.6098 22 6 7.0580 -8.9309 9.3491 23 7 8.1670 -9.5622 9.0356 24 14 6.6823 -8.5337 11.1353 25 1 5.9231 -9.6559 11.7430 26 1 7.9539 -8.3376 11.8768 27 1 5.8713 -7.2917 11.2063 28 6 4.6015 -6.8702 3.9499 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.2538 -2.5433 0.7124 37 1 2.9320 -2.2466 0.1986 38 1 3.6556 -2.2272 2.5698 39 1 1.9776 -2.5240 3.0845 40 1 3.5512 -4.5166 3.9879 41 1 1.8675 -6.8760 4.1809 42 1 1.5057 -6.7766 2.4397 43 1 1.5376 -9.1384 3.2534 44 1 2.7996 -8.8372 2.0337 45 1 3.2003 -8.8301 5.0601 46 1 3.7157 -10.1173 3.9443 47 1 5.9703 -9.8908 4.5127 48 1 6.8103 -8.3307 4.3426 49 1 7.2583 -9.3176 6.8097 50 1 8.7911 -9.8210 9.7317 51 1 5.5491 -6.3602 3.7765 52 1 4.2583 -6.6638 4.9637 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714918990.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:20 Heat of formation + Delta-G solvation = -153.030286 kcal Electronic energy + Delta-G solvation = -30011.207308 eV Core-core repulsion = 25816.183248 eV Total energy + Delta-G solvation = -4195.024061 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.39398 -40.62328 -39.34603 -38.71852 -36.18030 -35.53022 -34.33598 -33.72130 -33.24981 -32.02936 -30.35809 -28.85253 -28.11602 -26.50973 -25.24966 -24.10174 -23.33210 -22.27893 -21.40231 -21.24354 -20.72448 -19.79617 -18.47547 -17.80988 -17.52521 -17.29149 -17.03255 -16.70956 -16.24089 -16.07513 -15.91622 -15.70600 -15.65771 -15.58082 -15.05036 -14.80253 -14.65480 -14.38468 -14.18179 -13.73665 -13.64861 -13.46846 -13.36264 -13.28326 -13.09321 -13.00751 -12.75642 -12.54668 -12.43307 -12.38867 -12.24559 -12.14106 -12.11921 -11.86854 -11.78516 -11.61151 -11.51217 -11.34756 -10.94762 -10.93916 -10.56450 -10.09134 -9.99124 -9.01539 -8.46346 -5.95968 1.35555 1.40741 1.52382 1.57493 1.91074 2.01336 2.28139 2.76814 3.11948 3.19959 3.25588 3.68439 3.81626 3.88215 3.96428 4.00822 4.05279 4.14728 4.17338 4.20167 4.29981 4.40848 4.44911 4.49506 4.54276 4.54858 4.66868 4.69779 4.73999 4.76682 4.81170 4.90913 4.92940 4.93694 4.97535 4.98038 5.05453 5.15152 5.19485 5.28207 5.33155 5.37262 5.40815 5.47281 5.89032 6.04793 6.08624 6.24582 6.50138 6.58498 7.11363 7.18008 7.55210 8.09236 8.68807 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014543 B = 0.001946 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.868932 B =14383.388576 C =15640.697409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.071 3.929 3 C -0.147 4.147 4 O -0.398 6.398 5 C 0.083 3.917 6 C -0.132 4.132 7 C 0.521 3.479 8 O -0.580 6.580 9 N -0.715 5.715 10 C 0.161 3.839 11 H 0.079 0.921 12 C -0.122 4.122 13 C -0.102 4.102 14 C 0.041 3.959 15 N -0.503 5.503 16 C 0.050 3.950 17 C 0.409 3.591 18 O -0.618 6.618 19 N -0.569 5.569 20 C -0.331 4.331 21 H 0.080 0.920 22 C -0.012 4.012 23 N -0.918 5.918 24 Si 0.990 3.010 25 H -0.273 1.273 26 H -0.272 1.272 27 H -0.272 1.272 28 C 0.035 3.965 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.412 0.588 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.035 0.965 46 H 0.078 0.922 47 H 0.112 0.888 48 H 0.110 0.890 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.071 0.929 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.763 13.714 -16.433 23.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 C -0.204 4.204 4 O -0.318 6.318 5 C 0.005 3.995 6 C -0.172 4.172 7 C 0.309 3.691 8 O -0.461 6.461 9 N -0.366 5.366 10 C 0.055 3.945 11 H 0.097 0.903 12 C -0.160 4.160 13 C -0.141 4.141 14 C -0.087 4.087 15 N -0.225 5.225 16 C -0.082 4.082 17 C 0.196 3.804 18 O -0.506 6.506 19 N -0.205 5.205 20 C -0.461 4.461 21 H 0.098 0.902 22 C -0.212 4.212 23 N -0.559 5.559 24 Si 0.814 3.186 25 H -0.199 1.199 26 H -0.197 1.197 27 H -0.197 1.197 28 C -0.094 4.094 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.248 0.752 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.054 0.946 46 H 0.096 0.904 47 H 0.130 0.870 48 H 0.128 0.872 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.089 0.911 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.266 13.667 -17.209 24.256 hybrid contribution 0.302 -0.185 2.045 2.075 sum -9.965 13.482 -15.164 22.606 Atomic orbital electron populations 1.22290 0.95329 1.02196 1.03273 1.22312 0.94318 0.94357 0.87609 1.21872 1.01653 0.93581 1.03294 1.87834 1.86945 1.19957 1.37093 1.22045 0.99852 0.81083 0.96473 1.21450 1.05954 0.89735 1.00060 1.20795 0.75565 0.89563 0.83208 1.90688 1.52511 1.75461 1.27392 1.45973 1.66979 1.08466 1.15216 1.20723 0.94882 0.79314 0.99534 0.90252 1.21859 0.96965 0.96042 1.01177 1.21464 0.98225 0.94720 0.99662 1.22276 0.89916 0.98127 0.98412 1.62406 1.06209 1.03591 1.50340 1.22145 0.96576 1.03213 0.86249 1.22081 0.84975 0.83879 0.89458 1.90389 1.28600 1.47553 1.84078 1.42130 1.21011 1.51327 1.06054 1.19643 1.06445 1.36624 0.83392 0.90231 1.26015 0.94930 0.96264 1.04031 1.69672 1.10719 1.39633 1.35857 0.84971 0.77842 0.78626 0.77177 1.19853 1.19729 1.19723 1.22462 0.98719 0.88940 0.99275 0.93173 0.92026 0.89950 0.91864 0.92266 0.89414 0.92040 0.93307 0.93151 0.86270 0.86439 0.75220 0.92752 0.91867 0.90040 0.90686 0.94649 0.90369 0.87024 0.87209 0.77055 0.91344 0.91065 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 9.53 71.98 0.69 -1.55 16 2 C 0.07 1.06 3.34 30.60 0.10 1.16 16 3 C -0.15 -1.69 9.56 71.98 0.69 -1.01 16 4 O -0.40 -7.64 9.99 -148.98 -1.49 -9.13 16 5 C 0.08 1.60 5.04 71.98 0.36 1.96 16 6 C -0.13 -2.29 6.07 29.85 0.18 -2.11 16 7 C 0.52 12.34 7.80 87.66 0.68 13.03 16 8 O -0.58 -17.93 15.65 -3.03 -0.05 -17.98 16 9 N -0.72 -16.56 5.08 -442.29 -2.25 -18.81 16 10 C 0.16 4.40 2.62 45.04 0.12 4.51 16 11 H 0.08 2.39 7.58 -2.39 -0.02 2.37 16 12 C -0.12 -3.29 5.58 30.67 0.17 -3.12 16 13 C -0.10 -2.63 6.09 30.65 0.19 -2.44 16 14 C 0.04 1.25 5.10 86.33 0.44 1.69 16 15 N -0.50 -15.60 4.86 -900.91 -4.37 -19.98 16 16 C 0.05 1.63 5.86 85.56 0.50 2.13 16 17 C 0.41 17.89 7.20 87.66 0.63 18.52 16 18 O -0.62 -30.40 11.20 -3.07 -0.03 -30.43 16 19 N -0.57 -27.71 5.29 -306.97 -1.62 -29.33 16 20 C -0.33 -18.04 9.68 84.04 0.81 -17.22 16 21 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 22 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 23 N -0.92 -48.40 13.05 21.66 0.28 -48.12 16 24 Si 0.99 41.87 29.55 68.60 2.03 43.90 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 C 0.03 1.07 4.45 86.32 0.38 1.45 16 29 H 0.05 0.72 7.87 -2.39 -0.02 0.70 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.89 7.79 -2.39 -0.02 0.87 16 33 H 0.06 0.71 8.14 -2.38 -0.02 0.70 16 34 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.05 1.01 7.83 -2.39 -0.02 0.99 16 37 H 0.05 1.03 8.04 -2.39 -0.02 1.01 16 38 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.41 8.07 8.60 -92.71 -0.80 7.28 16 41 H 0.05 1.57 8.14 -2.38 -0.02 1.56 16 42 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.04 1.35 6.00 -2.39 -0.01 1.33 16 46 H 0.08 2.20 8.06 -2.39 -0.02 2.19 16 47 H 0.11 3.22 8.06 -2.39 -0.02 3.21 16 48 H 0.11 3.19 8.14 -2.38 -0.02 3.17 16 49 H 0.40 18.53 7.90 -92.71 -0.73 17.79 16 50 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 51 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 52 H 0.06 2.38 5.36 -2.39 -0.01 2.36 16 Total: -1.00 -66.26 413.77 -1.70 -67.96 By element: Atomic # 1 Polarization: 45.69 SS G_CDS: -0.61 Total: 45.08 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 6.42 Total: 16.83 kcal Atomic # 7 Polarization: -108.27 SS G_CDS: -7.96 Total: -116.24 kcal Atomic # 8 Polarization: -55.97 SS G_CDS: -1.57 Total: -57.54 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -66.26 -1.70 -67.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714918990.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.066 kcal (2) G-P(sol) polarization free energy of solvation -66.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds