Wall clock time and date at job start Wed Apr 1 2020 01:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47406 * 2 1 4 4 O 1.42899 * 109.47404 * 120.00217 * 2 1 3 5 5 C 1.42905 * 113.99926 * 89.99912 * 4 2 1 6 6 C 1.50696 * 109.47142 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99892 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00336 * 179.97438 * 6 5 4 9 9 C 1.46930 * 120.62540 * 0.02562 * 8 6 5 10 10 C 1.53189 * 108.76944 * 126.41381 * 9 8 6 11 11 C 1.53032 * 109.31495 * 54.63532 * 10 9 8 12 12 H 1.09003 * 109.46311 * 58.64206 * 11 10 9 13 13 N 1.46910 * 109.46291 * 178.61046 * 11 10 9 14 14 C 1.46892 * 110.99936 * 275.00258 * 13 11 10 15 15 C 1.50702 * 109.47256 * 179.97438 * 14 13 11 16 16 O 1.21293 * 119.99490 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00426 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00363 * 179.97438 * 17 15 14 19 19 H 1.08001 * 120.00037 * 0.02562 * 18 17 15 20 20 C 1.38945 * 120.00220 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99901 * 179.72435 * 20 18 17 22 22 Si 1.86800 * 120.00194 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72227 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72075 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72111 * 22 20 18 26 26 C 1.53035 * 109.54034 * 298.63252 * 11 10 9 27 27 H 1.09006 * 109.49608 * 301.41447 * 26 11 10 28 28 C 1.53004 * 109.50254 * 181.31924 * 26 11 10 29 29 C 1.46920 * 120.63318 * 180.02562 * 8 6 5 30 30 H 1.08993 * 109.47273 * 59.99038 * 1 2 3 31 31 H 1.09000 * 109.47211 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46717 * 299.99763 * 1 2 3 33 33 H 1.09006 * 109.46717 * 240.00237 * 2 1 3 34 34 H 1.09001 * 109.47188 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47006 * 300.00339 * 3 2 1 36 36 H 1.09000 * 109.47313 * 60.00107 * 3 2 1 37 37 H 1.08999 * 109.47255 * 59.99507 * 5 4 2 38 38 H 1.09004 * 109.46605 * 300.00091 * 5 4 2 39 39 H 1.08993 * 109.58591 * 6.62809 * 9 8 6 40 40 H 1.08999 * 109.70379 * 246.26900 * 9 8 6 41 41 H 1.09000 * 109.49777 * 294.68024 * 10 9 8 42 42 H 1.09008 * 109.51937 * 174.60462 * 10 9 8 43 43 H 1.00899 * 110.99413 * 38.95017 * 13 11 10 44 44 H 1.09000 * 109.47778 * 59.99479 * 14 13 11 45 45 H 1.09007 * 109.47317 * 299.99776 * 14 13 11 46 46 H 0.97000 * 120.00112 * 359.97438 * 17 15 14 47 47 H 0.96999 * 119.99993 * 180.27541 * 21 20 18 48 48 H 1.08999 * 109.46947 * 59.99489 * 28 26 11 49 49 H 1.08996 * 109.47159 * 180.02562 * 28 26 11 50 50 H 1.09002 * 109.46345 * 299.99744 * 28 26 11 51 51 H 1.09003 * 109.58399 * 353.37246 * 29 8 6 52 52 H 1.08994 * 109.59009 * 113.80216 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2001 -2.0783 0.9885 6 6 2.7016 -2.6833 2.2743 7 8 2.8763 -1.9808 3.2474 8 7 2.9559 -4.0051 2.3430 9 6 2.7496 -4.8689 1.1724 10 6 4.0412 -5.6461 0.8996 11 6 4.4589 -6.3946 2.1673 12 1 3.6595 -7.0712 2.4696 13 7 5.6791 -7.1677 1.8997 14 6 5.3561 -8.4739 1.3104 15 6 6.6297 -9.2363 1.0498 16 8 7.7011 -8.7399 1.3273 17 7 6.5783 -10.4690 0.5076 18 6 7.7369 -11.1623 0.2700 19 1 8.6909 -10.7208 0.5178 20 6 7.6839 -12.4335 -0.2885 21 7 8.7948 -13.0958 -0.5212 22 14 6.0339 -13.1976 -0.7165 23 1 5.5269 -13.9655 0.4491 24 1 5.0664 -12.1251 -1.0615 25 1 6.1968 -14.1094 -1.8771 26 6 4.7278 -5.3899 3.2899 27 1 5.5100 -4.6974 2.9786 28 6 5.1771 -6.1370 4.5473 29 6 3.4446 -4.6097 3.5897 30 1 -0.3633 0.5139 -0.8898 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6768 1.9563 0.8900 37 1 2.9319 -2.2467 0.1984 38 1 1.2538 -2.5433 0.7123 39 1 2.5016 -4.2564 0.3056 40 1 1.9372 -5.5681 1.3703 41 1 4.8298 -4.9512 0.6109 42 1 3.8729 -6.3607 0.0938 43 1 6.3121 -6.6507 1.3080 44 1 4.8224 -8.3271 0.3714 45 1 4.7289 -9.0387 2.0003 46 1 5.7215 -10.8658 0.2853 47 1 8.7580 -13.9815 -0.9148 48 1 6.0889 -6.6942 4.3325 49 1 5.3681 -5.4210 5.3466 50 1 4.3937 -6.8281 4.8585 51 1 3.6551 -3.8261 4.3177 52 1 2.6896 -5.2877 3.9876 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714999662.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:12 Heat of formation + Delta-G solvation = -116.848357 kcal Electronic energy + Delta-G solvation = -30143.035994 eV Core-core repulsion = 25949.580899 eV Total energy + Delta-G solvation = -4193.455095 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.68228 -39.07214 -38.43364 -37.75142 -35.26372 -34.00266 -33.47184 -33.00952 -31.70817 -31.10350 -28.88606 -27.65155 -27.26452 -26.01082 -24.57718 -23.28186 -22.43003 -21.79170 -20.65935 -19.69439 -19.28526 -18.31782 -17.71176 -17.17072 -16.51938 -16.16018 -15.97085 -15.48512 -15.10836 -15.06788 -14.97666 -14.68761 -14.47901 -14.02129 -13.96926 -13.81063 -13.28154 -13.24573 -13.07704 -12.83805 -12.69437 -12.62566 -12.49518 -12.41539 -12.38525 -12.10217 -12.02022 -11.88264 -11.76670 -11.55402 -11.25355 -11.18354 -11.13222 -10.88554 -10.63423 -10.55519 -10.11722 -10.00391 -9.97390 -9.60284 -8.98789 -8.61816 -8.21884 -8.13836 -6.33740 -3.85332 2.28717 2.35312 2.98473 3.03791 3.12109 3.37548 3.70684 3.99143 4.07427 4.12141 4.31787 4.44542 4.52610 4.60416 4.64493 4.65217 4.71216 4.75345 4.81369 4.88201 4.95625 5.13692 5.15128 5.18076 5.21734 5.26396 5.33207 5.38267 5.39388 5.43166 5.49952 5.59205 5.61280 5.71074 5.72224 5.77119 5.81180 5.82832 5.90875 6.04747 6.13763 6.24482 6.52811 6.68408 7.04062 7.07234 7.52442 7.55662 7.87234 8.11862 8.56849 8.92374 9.39583 9.79782 10.79379 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018257 B = 0.001931 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.306659 B =14499.427962 C =15241.873110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.078 3.922 3 C -0.150 4.150 4 O -0.358 6.358 5 C 0.045 3.955 6 C 0.517 3.483 7 O -0.520 6.520 8 N -0.611 5.611 9 C 0.111 3.889 10 C -0.170 4.170 11 C 0.093 3.907 12 H 0.079 0.921 13 N -0.659 5.659 14 C 0.049 3.951 15 C 0.449 3.551 16 O -0.564 6.564 17 N -0.591 5.591 18 C -0.305 4.305 19 H 0.119 0.881 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.277 1.277 26 C -0.091 4.091 27 H 0.074 0.926 28 C -0.136 4.136 29 C 0.117 3.883 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.351 0.649 44 H 0.043 0.957 45 H 0.087 0.913 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.081 0.919 49 H 0.048 0.952 50 H 0.049 0.951 51 H 0.095 0.905 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.646 21.201 -0.290 29.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.276 6.276 5 C -0.035 4.035 6 C 0.303 3.697 7 O -0.394 6.394 8 N -0.347 5.347 9 C -0.013 4.013 10 C -0.210 4.210 11 C -0.018 4.018 12 H 0.097 0.903 13 N -0.289 5.289 14 C -0.084 4.084 15 C 0.235 3.765 16 O -0.446 6.446 17 N -0.230 5.230 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.707 3.293 23 H -0.196 1.196 24 H -0.196 1.196 25 H -0.202 1.202 26 C -0.111 4.111 27 H 0.093 0.907 28 C -0.194 4.194 29 C -0.005 4.005 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.171 0.829 44 H 0.061 0.939 45 H 0.105 0.895 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.100 0.900 49 H 0.067 0.933 50 H 0.068 0.932 51 H 0.113 0.887 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.609 21.577 1.159 29.179 hybrid contribution -1.620 -0.892 -1.821 2.595 sum -21.229 20.686 -0.662 29.648 Atomic orbital electron populations 1.22316 0.95784 1.02392 1.02877 1.22188 0.93808 0.94129 0.87799 1.21855 1.02046 0.94131 1.02671 1.88071 1.86587 1.17655 1.35325 1.22276 1.01012 0.84193 0.95994 1.20214 0.78017 0.81698 0.89721 1.90727 1.51106 1.59902 1.37697 1.48085 1.66359 1.06843 1.13412 1.21724 0.98014 0.93857 0.87714 1.22755 0.97945 1.00260 1.00045 1.21630 0.92677 0.94161 0.93351 0.90253 1.60150 1.12908 1.03407 1.52482 1.21736 0.96889 0.91614 0.98188 1.19722 0.90252 0.82942 0.83614 1.90574 1.30492 1.68621 1.54887 1.42210 1.08413 1.15400 1.57000 1.19430 0.87193 0.97936 1.38844 0.86293 1.25044 0.97345 0.96302 0.97498 1.69622 1.26224 1.13244 1.42988 0.86664 0.83525 0.79906 0.79209 1.19598 1.19595 1.20206 1.21432 0.96650 0.96537 0.96438 0.90724 1.21645 1.02901 0.99681 0.95207 1.21776 0.95440 0.97482 0.85808 0.91424 0.92535 0.91540 0.92011 0.91799 0.91077 0.91562 0.90269 0.90444 0.90068 0.90756 0.90905 0.90309 0.82869 0.93885 0.89525 0.79734 0.91605 0.90037 0.93338 0.93156 0.88707 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.00 9.53 37.16 0.35 -0.65 16 2 C 0.08 0.54 3.34 -26.73 -0.09 0.45 16 3 C -0.15 -0.93 9.56 37.16 0.36 -0.58 16 4 O -0.36 -3.71 9.52 -55.14 -0.52 -4.23 16 5 C 0.05 0.37 4.57 36.00 0.16 0.53 16 6 C 0.52 5.80 7.78 -10.99 -0.09 5.72 16 7 O -0.52 -8.13 15.91 -14.36 -0.23 -8.35 16 8 N -0.61 -5.63 2.97 -172.80 -0.51 -6.14 16 9 C 0.11 0.72 6.34 -3.71 -0.02 0.70 16 10 C -0.17 -1.37 5.33 -26.62 -0.14 -1.52 16 11 C 0.09 0.94 1.89 -67.67 -0.13 0.81 16 12 H 0.08 0.77 7.80 -51.93 -0.40 0.36 16 13 N -0.66 -9.13 5.05 -107.95 -0.55 -9.67 16 14 C 0.05 0.73 5.96 -4.98 -0.03 0.70 16 15 C 0.45 9.77 7.82 -10.99 -0.09 9.69 16 16 O -0.56 -14.73 15.78 5.55 0.09 -14.65 16 17 N -0.59 -13.65 5.09 -10.96 -0.06 -13.70 16 18 C -0.31 -8.50 10.16 -14.94 -0.15 -8.65 16 19 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 20 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 21 N -0.88 -25.45 13.96 55.50 0.77 -24.68 16 22 Si 0.88 18.95 27.74 -169.99 -4.72 14.24 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 24 H -0.27 -5.24 6.51 56.52 0.37 -4.88 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 26 C -0.09 -0.93 2.59 -90.52 -0.23 -1.17 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 C -0.14 -1.49 9.03 37.16 0.34 -1.15 16 29 C 0.12 1.14 5.71 -3.74 -0.02 1.12 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.30 7.87 -51.93 -0.41 -0.11 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.33 7.79 -51.93 -0.40 -0.08 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.49 7.63 -51.93 -0.40 0.10 16 38 H 0.08 0.45 7.67 -51.93 -0.40 0.05 16 39 H 0.08 0.37 5.93 -51.93 -0.31 0.06 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.60 7.43 -51.92 -0.39 0.22 16 43 H 0.35 5.22 8.18 -39.29 -0.32 4.90 16 44 H 0.04 0.55 7.41 -51.93 -0.39 0.17 16 45 H 0.09 1.17 8.06 -51.93 -0.42 0.76 16 46 H 0.37 7.45 5.76 -40.82 -0.23 7.22 16 47 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.08 1.10 7.57 -51.93 -0.39 0.70 16 49 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.09 1.07 7.01 -51.93 -0.36 0.71 16 52 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 413.23 15.07 6.23 6.23 Total: -1.00 -35.16 413.23 -8.40 -43.57 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -9.03 Total: 10.39 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 0.12 Total: 7.01 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.34 Total: -54.20 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.67 Total: -27.23 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.72 Total: 14.24 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.16 -8.40 -43.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714999662.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.282 kcal (2) G-P(sol) polarization free energy of solvation -35.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds