Wall clock time and date at job start Wed Apr 1 2020 01:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47432 * 2 1 4 4 O 1.42904 * 109.46911 * 120.00165 * 2 1 3 5 5 C 1.42901 * 114.00472 * 89.99852 * 4 2 1 6 6 C 1.50703 * 109.46949 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00114 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99603 * 179.97438 * 6 5 4 9 9 C 1.46933 * 120.63331 * 0.02562 * 8 6 5 10 10 C 1.53188 * 108.77128 * 233.58627 * 9 8 6 11 11 C 1.53036 * 109.31594 * 305.35881 * 10 9 8 12 12 H 1.08997 * 109.45353 * 301.35664 * 11 10 9 13 13 N 1.46898 * 109.46151 * 181.38653 * 11 10 9 14 14 C 1.46906 * 110.99888 * 84.93455 * 13 11 10 15 15 C 1.50699 * 109.47140 * 180.02562 * 14 13 11 16 16 O 1.21297 * 119.99980 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00037 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99944 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00055 * 359.97438 * 18 17 15 20 20 C 1.38948 * 119.99682 * 179.97438 * 18 17 15 21 21 N 1.31418 * 119.99941 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00091 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47394 * 90.00283 * 22 20 18 24 24 H 1.48507 * 109.46828 * 210.00133 * 22 20 18 25 25 H 1.48495 * 109.47159 * 329.99467 * 22 20 18 26 26 C 1.53038 * 109.53393 * 61.37009 * 11 10 9 27 27 H 1.09000 * 109.50103 * 58.61947 * 26 11 10 28 28 C 1.53002 * 109.49859 * 178.68349 * 26 11 10 29 29 C 1.46923 * 120.63090 * 179.97438 * 8 6 5 30 30 H 1.08997 * 109.47330 * 300.00023 * 1 2 3 31 31 H 1.08998 * 109.46810 * 60.00136 * 1 2 3 32 32 H 1.09000 * 109.47078 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46961 * 239.99352 * 2 1 3 34 34 H 1.08998 * 109.47194 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.46863 * 299.99888 * 3 2 1 36 36 H 1.08993 * 109.47354 * 59.99816 * 3 2 1 37 37 H 1.09006 * 109.46796 * 59.99842 * 5 4 2 38 38 H 1.08996 * 109.46777 * 299.99713 * 5 4 2 39 39 H 1.08997 * 109.58203 * 353.37235 * 9 8 6 40 40 H 1.08996 * 109.58824 * 113.65290 * 9 8 6 41 41 H 1.09009 * 109.49637 * 185.41165 * 10 9 8 42 42 H 1.08999 * 109.50232 * 65.31824 * 10 9 8 43 43 H 1.00902 * 111.00533 * 320.97862 * 13 11 10 44 44 H 1.09000 * 109.47033 * 300.00113 * 14 13 11 45 45 H 1.09001 * 109.46544 * 60.00058 * 14 13 11 46 46 H 0.96996 * 119.99844 * 359.97438 * 17 15 14 47 47 H 0.97002 * 120.00138 * 180.02562 * 21 20 18 48 48 H 1.08999 * 109.47002 * 59.99420 * 28 26 11 49 49 H 1.08996 * 109.47413 * 180.02562 * 28 26 11 50 50 H 1.09004 * 109.47247 * 299.99829 * 28 26 11 51 51 H 1.09004 * 109.58509 * 6.63022 * 29 8 6 52 52 H 1.09000 * 109.70720 * 246.27065 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2000 -2.0783 0.9887 6 6 2.7013 -2.6832 2.2748 7 8 2.8751 -1.9808 3.2480 8 7 2.9556 -4.0049 2.3435 9 6 2.7494 -4.8689 1.1730 10 6 1.8400 -6.0344 1.5746 11 6 2.4405 -6.7507 2.7864 12 1 3.4390 -7.1099 2.5376 13 7 1.5882 -7.8892 3.1539 14 6 1.9271 -9.0782 2.3604 15 6 1.0337 -10.2228 2.7639 16 8 0.1973 -10.0639 3.6278 17 7 1.1648 -11.4234 2.1655 18 6 0.3517 -12.4645 2.5323 19 1 -0.3936 -12.3227 3.3009 20 6 0.4865 -13.7020 1.9150 21 7 -0.2925 -14.7001 2.2668 22 14 1.7752 -13.9469 0.5850 23 1 3.0476 -14.3956 1.2052 24 1 1.3040 -14.9751 -0.3774 25 1 1.9981 -12.6648 -0.1303 26 6 2.5275 -5.7778 3.9646 27 1 1.5324 -5.3994 4.1983 28 6 3.0975 -6.5035 5.1850 29 6 3.4452 -4.6092 3.5900 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9562 -0.8901 36 1 1.6768 1.9563 0.8899 37 1 2.9319 -2.2468 0.1987 38 1 1.2537 -2.5434 0.7126 39 1 2.2780 -4.2959 0.3746 40 1 3.7095 -5.2534 0.8290 41 1 1.7566 -6.7341 0.7429 42 1 0.8514 -5.6532 1.8304 43 1 0.6113 -7.6560 3.0566 44 1 1.7837 -8.8616 1.3018 45 1 2.9679 -9.3490 2.5382 46 1 1.8339 -11.5505 1.4749 47 1 -0.1982 -15.5642 1.8362 48 1 4.0930 -6.8808 4.9513 49 1 3.1588 -5.8104 6.0240 50 1 2.4461 -7.3366 5.4494 51 1 3.4329 -3.8650 4.3863 52 1 4.4622 -4.9744 3.4467 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714999665.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:21 Heat of formation + Delta-G solvation = -116.856171 kcal Electronic energy + Delta-G solvation = -30168.046173 eV Core-core repulsion = 25974.590739 eV Total energy + Delta-G solvation = -4193.455433 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.68087 -39.07015 -38.43238 -37.75040 -35.26392 -34.00204 -33.46823 -33.00628 -31.70728 -31.10204 -28.88324 -27.64355 -27.26465 -26.00942 -24.57688 -23.28328 -22.43036 -21.78659 -20.66099 -19.69225 -19.28451 -18.31832 -17.71193 -17.18071 -16.48217 -16.20740 -15.94304 -15.45936 -15.16996 -15.08488 -14.84694 -14.74474 -14.48967 -14.13489 -13.99169 -13.53500 -13.41745 -13.21057 -13.09699 -12.88312 -12.67315 -12.62358 -12.47469 -12.41292 -12.37113 -12.10034 -12.01900 -11.88658 -11.76684 -11.55394 -11.25485 -11.17964 -11.13048 -10.88555 -10.63548 -10.55511 -10.11716 -10.00355 -9.97042 -9.60272 -8.98782 -8.61835 -8.21855 -8.13828 -6.33743 -3.85336 2.28478 2.35692 2.98522 3.03794 3.12100 3.37590 3.70638 3.99141 4.07434 4.12129 4.31841 4.44346 4.54158 4.60448 4.64540 4.65446 4.70955 4.75367 4.81529 4.88241 4.95491 5.14429 5.15990 5.17990 5.21573 5.26482 5.35233 5.38219 5.39243 5.43190 5.49973 5.59187 5.61332 5.71306 5.73808 5.77307 5.81202 5.82836 5.90858 6.04706 6.13750 6.24562 6.52827 6.68540 7.04110 7.07239 7.52447 7.55646 7.87292 8.11820 8.56831 8.92346 9.39554 9.79755 10.79365 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018081 B = 0.001947 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.219036 B =14380.647082 C =15132.259305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.079 3.921 3 C -0.149 4.149 4 O -0.358 6.358 5 C 0.045 3.955 6 C 0.517 3.483 7 O -0.520 6.520 8 N -0.611 5.611 9 C 0.111 3.889 10 C -0.170 4.170 11 C 0.093 3.907 12 H 0.079 0.921 13 N -0.659 5.659 14 C 0.049 3.951 15 C 0.449 3.551 16 O -0.564 6.564 17 N -0.591 5.591 18 C -0.305 4.305 19 H 0.119 0.881 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C -0.091 4.091 27 H 0.074 0.926 28 C -0.137 4.137 29 C 0.117 3.883 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.351 0.649 44 H 0.043 0.957 45 H 0.087 0.913 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.049 0.951 49 H 0.048 0.952 50 H 0.081 0.919 51 H 0.094 0.906 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.120 26.456 -9.420 29.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.277 6.277 5 C -0.035 4.035 6 C 0.303 3.697 7 O -0.394 6.394 8 N -0.347 5.347 9 C -0.013 4.013 10 C -0.210 4.210 11 C -0.018 4.018 12 H 0.098 0.902 13 N -0.290 5.290 14 C -0.084 4.084 15 C 0.235 3.765 16 O -0.446 6.446 17 N -0.230 5.230 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.707 3.293 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 C -0.110 4.110 27 H 0.093 0.907 28 C -0.194 4.194 29 C -0.005 4.005 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.171 0.829 44 H 0.061 0.939 45 H 0.105 0.895 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.069 0.931 49 H 0.067 0.933 50 H 0.100 0.900 51 H 0.113 0.887 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.985 26.623 -7.610 29.111 hybrid contribution 0.456 -0.522 -2.460 2.556 sum 9.441 26.102 -10.070 29.527 Atomic orbital electron populations 1.22320 0.95700 1.02527 1.02908 1.22186 0.93902 0.94058 0.87737 1.21852 1.01909 0.94189 1.02717 1.88070 1.86582 1.17644 1.35357 1.22276 1.01083 0.84201 0.95913 1.20213 0.77910 0.81789 0.89740 1.90726 1.51086 1.59994 1.37627 1.48085 1.66497 1.06707 1.13413 1.21730 1.00183 0.92066 0.87328 1.22754 1.00097 0.97770 1.00372 1.21628 0.97466 0.90487 0.92230 0.90248 1.60147 1.09189 1.02526 1.57090 1.21737 1.00199 0.91222 0.95267 1.19724 0.87385 0.83686 0.85736 1.90575 1.37843 1.82844 1.33309 1.42208 1.34307 1.10456 1.36046 1.19432 1.15049 0.87636 1.21292 0.86292 1.25045 0.97639 0.95382 0.98118 1.69625 1.37986 1.02249 1.42219 0.86666 0.82085 0.78537 0.82026 1.19594 1.20207 1.19592 1.21445 0.99856 0.93928 0.95815 0.90725 1.21646 1.01185 1.00874 0.95739 1.21788 0.97002 0.95583 0.86145 0.91489 0.91421 0.92446 0.92066 0.91893 0.91080 0.91531 0.90387 0.90328 0.90072 0.90752 0.90310 0.90906 0.82869 0.93884 0.89521 0.79740 0.91606 0.93148 0.93340 0.90046 0.88724 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.09 9.53 37.16 0.35 -0.73 16 2 C 0.08 0.54 3.34 -26.74 -0.09 0.45 16 3 C -0.15 -0.90 9.56 37.15 0.36 -0.55 16 4 O -0.36 -3.71 9.52 -55.14 -0.52 -4.24 16 5 C 0.05 0.37 4.57 36.01 0.16 0.53 16 6 C 0.52 5.80 7.78 -10.99 -0.09 5.72 16 7 O -0.52 -8.13 15.91 -14.35 -0.23 -8.35 16 8 N -0.61 -5.63 2.97 -172.74 -0.51 -6.14 16 9 C 0.11 0.72 6.34 -3.71 -0.02 0.70 16 10 C -0.17 -1.37 5.33 -26.62 -0.14 -1.52 16 11 C 0.09 0.94 1.89 -67.68 -0.13 0.81 16 12 H 0.08 0.77 7.80 -51.93 -0.40 0.36 16 13 N -0.66 -9.13 5.05 -107.95 -0.55 -9.67 16 14 C 0.05 0.73 5.96 -4.97 -0.03 0.70 16 15 C 0.45 9.77 7.82 -10.99 -0.09 9.69 16 16 O -0.56 -14.73 15.78 5.54 0.09 -14.65 16 17 N -0.59 -13.65 5.09 -10.96 -0.06 -13.70 16 18 C -0.31 -8.50 10.16 -14.93 -0.15 -8.65 16 19 H 0.12 3.81 7.39 -52.48 -0.39 3.42 16 20 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 21 N -0.88 -25.46 13.96 55.50 0.77 -24.68 16 22 Si 0.88 18.95 27.74 -169.99 -4.71 14.24 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.27 -5.24 6.52 56.52 0.37 -4.88 16 26 C -0.09 -0.93 2.60 -90.48 -0.23 -1.17 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 C -0.14 -1.49 9.03 37.16 0.34 -1.16 16 29 C 0.12 1.14 5.72 -3.69 -0.02 1.11 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.35 7.87 -51.93 -0.41 -0.06 16 33 H 0.06 0.31 7.79 -51.93 -0.40 -0.09 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.29 8.14 -51.92 -0.42 -0.13 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.44 7.89 -51.93 -0.41 0.03 16 38 H 0.08 0.50 7.42 -51.93 -0.39 0.11 16 39 H 0.08 0.37 5.93 -51.93 -0.31 0.06 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.60 7.42 -51.92 -0.39 0.22 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.35 5.22 8.18 -39.29 -0.32 4.90 16 44 H 0.04 0.55 7.41 -51.93 -0.38 0.17 16 45 H 0.09 1.18 8.05 -51.93 -0.42 0.76 16 46 H 0.37 7.45 5.76 -40.82 -0.24 7.22 16 47 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.08 1.10 7.57 -51.93 -0.39 0.70 16 51 H 0.09 1.07 7.01 -51.93 -0.36 0.70 16 52 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 413.23 15.07 6.23 6.23 Total: -1.00 -35.17 413.23 -8.40 -43.57 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -9.03 Total: 10.44 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 0.12 Total: 6.96 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.34 Total: -54.20 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.67 Total: -27.24 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.71 Total: 14.24 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.17 -8.40 -43.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714999665.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.282 kcal (2) G-P(sol) polarization free energy of solvation -35.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds