Wall clock time and date at job start Wed Apr 1 2020 01:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47432 * 2 1 4 4 O 1.42904 * 109.46911 * 120.00165 * 2 1 3 5 5 C 1.42901 * 114.00472 * 89.99852 * 4 2 1 6 6 C 1.50703 * 109.46949 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00114 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99603 * 179.97438 * 6 5 4 9 9 C 1.46933 * 120.63331 * 0.02562 * 8 6 5 10 10 C 1.53188 * 108.77128 * 233.58627 * 9 8 6 11 11 C 1.53036 * 109.31594 * 305.35881 * 10 9 8 12 12 H 1.08997 * 109.45353 * 301.35664 * 11 10 9 13 13 N 1.46898 * 109.46151 * 181.38653 * 11 10 9 14 14 C 1.46906 * 110.99888 * 84.93455 * 13 11 10 15 15 C 1.50699 * 109.47140 * 180.02562 * 14 13 11 16 16 O 1.21297 * 119.99980 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00037 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99944 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00055 * 359.97438 * 18 17 15 20 20 C 1.38948 * 119.99682 * 179.97438 * 18 17 15 21 21 N 1.31418 * 119.99941 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00091 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47394 * 90.00283 * 22 20 18 24 24 H 1.48507 * 109.46828 * 210.00133 * 22 20 18 25 25 H 1.48495 * 109.47159 * 329.99467 * 22 20 18 26 26 C 1.53038 * 109.53393 * 61.37009 * 11 10 9 27 27 H 1.09000 * 109.50103 * 58.61947 * 26 11 10 28 28 C 1.53002 * 109.49859 * 178.68349 * 26 11 10 29 29 C 1.46923 * 120.63090 * 179.97438 * 8 6 5 30 30 H 1.08997 * 109.47330 * 300.00023 * 1 2 3 31 31 H 1.08998 * 109.46810 * 60.00136 * 1 2 3 32 32 H 1.09000 * 109.47078 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46961 * 239.99352 * 2 1 3 34 34 H 1.08998 * 109.47194 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.46863 * 299.99888 * 3 2 1 36 36 H 1.08993 * 109.47354 * 59.99816 * 3 2 1 37 37 H 1.09006 * 109.46796 * 59.99842 * 5 4 2 38 38 H 1.08996 * 109.46777 * 299.99713 * 5 4 2 39 39 H 1.08997 * 109.58203 * 353.37235 * 9 8 6 40 40 H 1.08996 * 109.58824 * 113.65290 * 9 8 6 41 41 H 1.09009 * 109.49637 * 185.41165 * 10 9 8 42 42 H 1.08999 * 109.50232 * 65.31824 * 10 9 8 43 43 H 1.00902 * 111.00533 * 320.97862 * 13 11 10 44 44 H 1.09000 * 109.47033 * 300.00113 * 14 13 11 45 45 H 1.09001 * 109.46544 * 60.00058 * 14 13 11 46 46 H 0.96996 * 119.99844 * 359.97438 * 17 15 14 47 47 H 0.97002 * 120.00138 * 180.02562 * 21 20 18 48 48 H 1.08999 * 109.47002 * 59.99420 * 28 26 11 49 49 H 1.08996 * 109.47413 * 180.02562 * 28 26 11 50 50 H 1.09004 * 109.47247 * 299.99829 * 28 26 11 51 51 H 1.09004 * 109.58509 * 6.63022 * 29 8 6 52 52 H 1.09000 * 109.70720 * 246.27065 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2000 -2.0783 0.9887 6 6 2.7013 -2.6832 2.2748 7 8 2.8751 -1.9808 3.2480 8 7 2.9556 -4.0049 2.3435 9 6 2.7494 -4.8689 1.1730 10 6 1.8400 -6.0344 1.5746 11 6 2.4405 -6.7507 2.7864 12 1 3.4390 -7.1099 2.5376 13 7 1.5882 -7.8892 3.1539 14 6 1.9271 -9.0782 2.3604 15 6 1.0337 -10.2228 2.7639 16 8 0.1973 -10.0639 3.6278 17 7 1.1648 -11.4234 2.1655 18 6 0.3517 -12.4645 2.5323 19 1 -0.3936 -12.3227 3.3009 20 6 0.4865 -13.7020 1.9150 21 7 -0.2925 -14.7001 2.2668 22 14 1.7752 -13.9469 0.5850 23 1 3.0476 -14.3956 1.2052 24 1 1.3040 -14.9751 -0.3774 25 1 1.9981 -12.6648 -0.1303 26 6 2.5275 -5.7778 3.9646 27 1 1.5324 -5.3994 4.1983 28 6 3.0975 -6.5035 5.1850 29 6 3.4452 -4.6092 3.5900 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9562 -0.8901 36 1 1.6768 1.9563 0.8899 37 1 2.9319 -2.2468 0.1987 38 1 1.2537 -2.5434 0.7126 39 1 2.2780 -4.2959 0.3746 40 1 3.7095 -5.2534 0.8290 41 1 1.7566 -6.7341 0.7429 42 1 0.8514 -5.6532 1.8304 43 1 0.6113 -7.6560 3.0566 44 1 1.7837 -8.8616 1.3018 45 1 2.9679 -9.3490 2.5382 46 1 1.8339 -11.5505 1.4749 47 1 -0.1982 -15.5642 1.8362 48 1 4.0930 -6.8808 4.9513 49 1 3.1588 -5.8104 6.0240 50 1 2.4461 -7.3366 5.4494 51 1 3.4329 -3.8650 4.3863 52 1 4.4622 -4.9744 3.4467 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714999665.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:20 Heat of formation + Delta-G solvation = -143.389955 kcal Electronic energy + Delta-G solvation = -30169.196764 eV Core-core repulsion = 25974.590739 eV Total energy + Delta-G solvation = -4194.606025 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.45515 -40.33234 -39.50740 -38.66541 -36.35469 -35.81064 -34.29888 -33.72688 -33.60027 -31.98053 -29.59466 -28.57701 -28.10083 -26.91480 -25.99307 -24.31148 -23.25229 -22.27285 -21.55661 -21.20099 -20.46165 -19.99681 -18.42696 -17.86518 -17.65091 -17.17870 -16.92858 -16.68888 -16.41394 -16.05985 -15.78773 -15.59569 -15.40440 -15.30563 -14.94994 -14.78355 -14.40190 -14.37946 -14.01913 -13.93201 -13.75929 -13.47798 -13.40318 -13.30281 -13.07352 -12.98267 -12.90808 -12.88553 -12.72267 -12.40032 -12.39200 -12.36258 -11.96782 -11.94874 -11.73352 -11.64859 -11.49134 -11.39526 -10.81350 -10.65619 -10.39952 -10.22739 -9.74583 -9.18463 -8.39519 -6.00622 1.31200 1.38005 1.46517 1.49975 1.69550 1.99461 2.25046 2.74375 2.83545 3.17139 3.41168 3.48588 3.68205 3.89953 3.98784 4.01153 4.06439 4.08066 4.14831 4.22105 4.26127 4.29682 4.31720 4.42955 4.46546 4.54454 4.59824 4.72207 4.73530 4.75572 4.77241 4.80891 4.83770 4.89996 4.94090 4.98749 5.15199 5.19686 5.28764 5.32220 5.35141 5.41885 5.55080 5.59787 5.94171 6.12773 6.14484 6.36251 6.42292 6.62166 6.90732 7.10069 7.42634 8.00327 8.78250 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018081 B = 0.001947 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.219036 B =14380.647082 C =15132.259305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.073 3.927 3 C -0.150 4.150 4 O -0.395 6.395 5 C 0.046 3.954 6 C 0.508 3.492 7 O -0.578 6.578 8 N -0.607 5.607 9 C 0.109 3.891 10 C -0.164 4.164 11 C 0.096 3.904 12 H 0.098 0.902 13 N -0.678 5.678 14 C 0.065 3.935 15 C 0.447 3.553 16 O -0.617 6.617 17 N -0.591 5.591 18 C -0.329 4.329 19 H 0.052 0.948 20 C -0.018 4.018 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.258 1.258 24 H -0.277 1.277 25 H -0.226 1.226 26 C -0.084 4.084 27 H 0.052 0.948 28 C -0.132 4.132 29 C 0.121 3.879 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.049 0.951 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.060 0.940 43 H 0.342 0.658 44 H 0.082 0.918 45 H 0.114 0.886 46 H 0.390 0.610 47 H 0.278 0.722 48 H 0.063 0.937 49 H 0.049 0.951 50 H 0.052 0.948 51 H 0.071 0.929 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.124 27.391 -13.832 32.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.016 3.984 3 C -0.207 4.207 4 O -0.314 6.314 5 C -0.033 4.033 6 C 0.297 3.703 7 O -0.457 6.457 8 N -0.341 5.341 9 C -0.013 4.013 10 C -0.204 4.204 11 C -0.014 4.014 12 H 0.116 0.884 13 N -0.309 5.309 14 C -0.067 4.067 15 C 0.235 3.765 16 O -0.501 6.501 17 N -0.233 5.233 18 C -0.458 4.458 19 H 0.070 0.930 20 C -0.216 4.216 21 N -0.577 5.577 22 Si 0.787 3.213 23 H -0.183 1.183 24 H -0.202 1.202 25 H -0.150 1.150 26 C -0.104 4.104 27 H 0.070 0.930 28 C -0.190 4.190 29 C -0.002 4.002 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.129 0.871 38 H 0.117 0.883 39 H 0.127 0.873 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.079 0.921 43 H 0.161 0.839 44 H 0.100 0.900 45 H 0.132 0.868 46 H 0.226 0.774 47 H 0.088 0.912 48 H 0.082 0.918 49 H 0.068 0.932 50 H 0.071 0.929 51 H 0.090 0.910 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.006 27.568 -12.055 32.396 hybrid contribution -0.585 -0.778 -0.938 1.352 sum 11.421 26.790 -12.993 31.890 Atomic orbital electron populations 1.22319 0.95435 1.02633 1.02938 1.22409 0.94165 0.94232 0.87608 1.21888 1.01668 0.94155 1.03009 1.88041 1.87038 1.18883 1.37477 1.22418 1.02812 0.83378 0.94670 1.20914 0.77069 0.82089 0.90254 1.90698 1.53731 1.61471 1.39777 1.48187 1.65362 1.06562 1.13967 1.22002 1.01366 0.91313 0.86640 1.22684 0.99649 0.98455 0.99631 1.21677 0.97699 0.89212 0.92789 0.88368 1.60101 1.09174 1.03620 1.58012 1.21654 0.99320 0.88518 0.97204 1.21120 0.86831 0.84645 0.83874 1.90558 1.40237 1.83881 1.35438 1.42022 1.34369 1.09865 1.37036 1.18995 1.15541 0.90155 1.21123 0.92957 1.26161 1.00382 0.94032 1.01014 1.69819 1.40552 1.03136 1.44210 0.85339 0.77945 0.80302 0.77746 1.18288 1.20245 1.14951 1.21340 0.98781 0.94271 0.95968 0.92991 1.21575 1.01177 0.99940 0.96334 1.21666 0.97744 0.94500 0.86242 0.93303 0.89546 0.92286 0.89570 0.92284 0.88858 0.93169 0.87058 0.88267 0.87345 0.88279 0.88640 0.92145 0.83940 0.90043 0.86772 0.77409 0.91222 0.91785 0.93208 0.92927 0.91040 0.89261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 9.53 71.98 0.69 -1.18 16 2 C 0.07 0.85 3.34 30.59 0.10 0.96 16 3 C -0.15 -1.63 9.56 71.98 0.69 -0.94 16 4 O -0.39 -7.73 9.52 -129.94 -1.24 -8.96 16 5 C 0.05 0.63 4.57 71.24 0.33 0.96 16 6 C 0.51 10.78 7.78 87.66 0.68 11.46 16 7 O -0.58 -18.51 15.91 16.01 0.25 -18.26 16 8 N -0.61 -9.70 2.97 -818.83 -2.43 -12.13 16 9 C 0.11 0.91 6.34 86.36 0.55 1.46 16 10 C -0.16 -2.01 5.33 30.67 0.16 -1.84 16 11 C 0.10 1.65 1.89 44.94 0.08 1.74 16 12 H 0.10 1.39 7.80 -2.39 -0.02 1.37 16 13 N -0.68 -17.61 5.05 -495.44 -2.50 -20.11 16 14 C 0.07 1.74 5.96 85.56 0.51 2.25 16 15 C 0.45 19.20 7.82 87.66 0.69 19.89 16 16 O -0.62 -33.47 15.78 -3.08 -0.05 -33.52 16 17 N -0.59 -26.75 5.09 -306.98 -1.56 -28.31 16 18 C -0.33 -18.97 10.16 84.04 0.85 -18.12 16 19 H 0.05 3.63 7.39 -2.91 -0.02 3.61 16 20 C -0.02 -0.96 5.50 84.92 0.47 -0.49 16 21 N -0.94 -56.05 13.96 21.66 0.30 -55.74 16 22 Si 0.97 37.51 27.74 68.60 1.90 39.41 16 23 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 24 H -0.28 -10.76 7.11 99.48 0.71 -10.06 16 25 H -0.23 -7.13 6.52 99.48 0.65 -6.48 16 26 C -0.08 -1.65 2.60 -10.70 -0.03 -1.67 16 27 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 28 C -0.13 -2.84 9.03 71.98 0.65 -2.19 16 29 C 0.12 2.18 5.72 86.38 0.49 2.68 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.59 7.87 -2.39 -0.02 0.57 16 33 H 0.09 0.56 7.79 -2.39 -0.02 0.55 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 36 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.11 0.75 7.89 -2.38 -0.02 0.73 16 38 H 0.10 0.92 7.42 -2.39 -0.02 0.90 16 39 H 0.11 0.38 5.93 -2.39 -0.01 0.36 16 40 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.10 0.92 7.42 -2.38 -0.02 0.91 16 42 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.34 9.99 8.18 -89.69 -0.73 9.26 16 44 H 0.08 1.62 7.41 -2.39 -0.02 1.61 16 45 H 0.11 2.51 8.05 -2.39 -0.02 2.49 16 46 H 0.39 14.30 5.76 -92.71 -0.53 13.76 16 47 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 48 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.05 1.44 7.57 -2.38 -0.02 1.43 16 51 H 0.07 1.65 7.01 -2.39 -0.02 1.63 16 52 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -86.58 413.23 1.18 -85.40 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: -0.41 Total: 37.30 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 6.91 Total: 14.93 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -6.20 Total: -116.30 kcal Atomic # 8 Polarization: -59.71 SS G_CDS: -1.03 Total: -60.74 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 1.90 Total: 39.41 kcal Total: -86.58 1.18 -85.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714999665.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.994 kcal (2) G-P(sol) polarization free energy of solvation -86.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds