Wall clock time and date at job start Wed Apr 1 2020 00:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42895 * 113.99879 * 2 1 4 4 C 1.50706 * 109.46961 * 179.97438 * 3 2 1 5 5 O 1.21282 * 120.00011 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99847 * 180.02562 * 4 3 2 7 7 C 1.46506 * 119.99987 * 185.28243 * 6 4 3 8 8 C 1.52999 * 109.47224 * 296.32523 * 7 6 4 9 9 N 1.46901 * 109.47055 * 185.39310 * 8 7 6 10 10 C 1.46897 * 110.99991 * 174.82414 * 9 8 7 11 11 C 1.50697 * 109.47332 * 180.02562 * 10 9 8 12 12 O 1.21291 * 119.99816 * 359.97438 * 11 10 9 13 13 N 1.34782 * 120.00407 * 180.02562 * 11 10 9 14 14 C 1.37094 * 119.99857 * 179.97438 * 13 11 10 15 15 H 1.07994 * 120.00680 * 0.02562 * 14 13 11 16 16 C 1.38960 * 119.99640 * 179.97438 * 14 13 11 17 17 N 1.31407 * 119.99720 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99748 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46786 * 90.00428 * 18 16 14 20 20 H 1.48503 * 109.46714 * 209.99822 * 18 16 14 21 21 H 1.48502 * 109.47420 * 330.00017 * 18 16 14 22 22 C 1.53005 * 109.46869 * 56.32204 * 7 6 4 23 23 C 1.53000 * 109.46956 * 59.99747 * 22 7 6 24 24 C 1.53000 * 109.47235 * 60.00191 * 23 22 7 25 25 C 1.53000 * 109.47165 * 300.00269 * 24 23 22 26 26 C 1.52994 * 109.47449 * 176.31877 * 7 6 4 27 27 H 1.09000 * 109.47544 * 179.97438 * 26 7 6 28 28 C 1.53005 * 109.46818 * 60.00295 * 26 7 6 29 29 H 1.09001 * 109.46948 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46951 * 299.99850 * 1 2 3 31 31 H 1.09001 * 109.46528 * 60.00225 * 1 2 3 32 32 H 1.09000 * 109.47197 * 60.00226 * 3 2 1 33 33 H 1.08992 * 109.47597 * 299.99805 * 3 2 1 34 34 H 0.96998 * 120.00315 * 5.56622 * 6 4 3 35 35 H 1.09002 * 109.47242 * 305.39456 * 8 7 6 36 36 H 1.08998 * 109.47356 * 65.39577 * 8 7 6 37 37 H 1.00902 * 110.99895 * 298.77777 * 9 8 7 38 38 H 1.09005 * 109.47271 * 300.00019 * 10 9 8 39 39 H 1.08999 * 109.47110 * 60.00137 * 10 9 8 40 40 H 0.97002 * 119.99654 * 0.02562 * 13 11 10 41 41 H 0.97004 * 119.99999 * 179.97438 * 17 16 14 42 42 H 1.08992 * 109.46985 * 180.02562 * 22 7 6 43 43 H 1.09004 * 109.46835 * 300.00018 * 22 7 6 44 44 H 1.09000 * 109.47516 * 299.99741 * 23 22 7 45 45 H 1.09004 * 109.47074 * 180.02562 * 23 22 7 46 46 H 1.08992 * 109.47332 * 179.97438 * 24 23 22 47 47 H 1.09006 * 109.46811 * 59.99414 * 24 23 22 48 48 H 1.09006 * 109.46985 * 299.99626 * 25 24 23 49 49 H 1.08994 * 109.47573 * 179.97438 * 25 24 23 50 50 H 1.09005 * 109.46989 * 60.00027 * 28 26 7 51 51 H 1.09004 * 109.46835 * 180.02562 * 28 26 7 52 52 H 1.09000 * 109.47223 * 300.00456 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0342 0.0915 0.0006 6 7 4.2765 2.2967 0.0013 7 6 5.7326 2.1842 -0.1149 8 6 6.2854 1.4402 1.1024 9 7 7.7535 1.4400 1.0510 10 6 8.3227 0.8416 2.2658 11 6 9.8269 0.8594 2.1773 12 8 10.3713 1.3244 1.1982 13 7 10.5674 0.3578 3.1855 14 6 11.9359 0.3735 3.1046 15 1 12.4207 0.7883 2.2333 16 6 12.6993 -0.1432 4.1444 17 7 12.1095 -0.6474 5.2049 18 14 14.5639 -0.1211 4.0345 19 1 15.0790 1.1445 4.6161 20 1 15.1179 -1.2740 4.7889 21 1 14.9771 -0.2161 2.6113 22 6 6.0844 1.4115 -1.3878 23 6 5.5315 2.1553 -2.6051 24 6 6.1475 3.5543 -2.6711 25 6 5.7959 4.3269 -1.3982 26 6 6.3487 3.5830 -0.1809 27 1 7.4320 3.4993 -0.2669 28 6 5.9969 4.3557 1.0920 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8463 -0.8899 34 1 3.8626 3.1702 0.0828 35 1 5.9538 1.9379 2.0138 36 1 5.9215 0.4128 1.0965 37 1 8.0863 0.9663 0.2245 38 1 8.0036 1.4142 3.1368 39 1 7.9761 -0.1875 2.3607 40 1 10.1321 -0.0151 3.9681 41 1 12.6424 -1.0085 5.9306 42 1 7.1676 1.3273 -1.4740 43 1 5.6454 0.4148 -1.3408 44 1 4.4482 2.2391 -2.5187 45 1 5.7817 1.6046 -3.5120 46 1 5.7540 4.0840 -3.5386 47 1 7.2309 3.4704 -2.7576 48 1 4.7125 4.4107 -1.3117 49 1 6.2351 5.3234 -1.4450 50 1 6.3907 3.8257 1.9593 51 1 6.4355 5.3525 1.0448 52 1 4.9136 4.4394 1.1785 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715128635.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:22 Heat of formation + Delta-G solvation = -124.760630 kcal Electronic energy + Delta-G solvation = -31437.320117 eV Core-core repulsion = 27243.521920 eV Total energy + Delta-G solvation = -4193.798197 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.02664 -38.84444 -38.11946 -37.37471 -35.19444 -33.98143 -33.67459 -32.57464 -31.22235 -30.77959 -28.79350 -27.44799 -26.42318 -25.76276 -24.81664 -23.40400 -22.10426 -20.98720 -20.94953 -19.18292 -18.96024 -17.84069 -17.78041 -16.84481 -16.62860 -16.14616 -15.52956 -15.37847 -15.17427 -15.07672 -14.70087 -14.41780 -14.26418 -14.04345 -13.89624 -13.78960 -13.39120 -13.34102 -12.96359 -12.83035 -12.57281 -12.44720 -12.13393 -11.90476 -11.85381 -11.76247 -11.58980 -11.49496 -11.42919 -11.28896 -10.99614 -10.88616 -10.61200 -10.36264 -10.25595 -10.18643 -10.17739 -10.14165 -9.57844 -9.46068 -9.11461 -8.36149 -7.94368 -7.88311 -6.37108 -3.77678 2.45431 2.60131 3.21031 3.29201 3.35300 3.73542 3.97346 4.16589 4.33120 4.55695 4.60683 4.65437 4.67791 4.74376 4.77062 4.92437 4.97263 5.03087 5.04301 5.22630 5.27486 5.28432 5.31343 5.34244 5.43012 5.48968 5.51899 5.69312 5.77218 5.80248 5.89432 5.92850 5.97530 6.01246 6.06435 6.11171 6.12352 6.21692 6.27871 6.31529 6.39913 6.40385 6.56775 6.65340 7.28796 7.38187 7.59477 7.74357 8.10534 8.11475 8.66589 9.22643 9.59954 10.11521 10.80786 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014575 B = 0.002467 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.593303 B =11348.968336 C =12465.201348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.041 3.959 4 C 0.512 3.488 5 O -0.510 6.510 6 N -0.717 5.717 7 C 0.196 3.804 8 C 0.047 3.953 9 N -0.662 5.662 10 C 0.052 3.948 11 C 0.443 3.557 12 O -0.583 6.583 13 N -0.565 5.565 14 C -0.298 4.298 15 H 0.103 0.897 16 C 0.021 3.979 17 N -0.902 5.902 18 Si 0.930 3.070 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.270 1.270 22 C -0.136 4.136 23 C -0.111 4.111 24 C -0.121 4.121 25 C -0.114 4.114 26 C -0.085 4.085 27 H 0.108 0.892 28 C -0.145 4.145 29 H 0.091 0.909 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.398 0.602 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.348 0.652 38 H 0.084 0.916 39 H 0.043 0.957 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.066 0.934 48 H 0.054 0.946 49 H 0.063 0.937 50 H 0.066 0.934 51 H 0.055 0.945 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.296 8.866 -10.637 27.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C -0.039 4.039 4 C 0.297 3.703 5 O -0.384 6.384 6 N -0.372 5.372 7 C 0.110 3.890 8 C -0.083 4.083 9 N -0.295 5.295 10 C -0.081 4.081 11 C 0.229 3.771 12 O -0.467 6.467 13 N -0.202 5.202 14 C -0.427 4.427 15 H 0.121 0.879 16 C -0.181 4.181 17 N -0.544 5.544 18 Si 0.757 3.243 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.194 1.194 22 C -0.175 4.175 23 C -0.149 4.149 24 C -0.158 4.158 25 C -0.152 4.152 26 C -0.104 4.104 27 H 0.126 0.874 28 C -0.202 4.202 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.233 0.767 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.168 0.832 38 H 0.102 0.898 39 H 0.061 0.939 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.085 0.915 48 H 0.072 0.928 49 H 0.082 0.918 50 H 0.085 0.915 51 H 0.074 0.926 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -23.293 8.743 -10.913 27.168 hybrid contribution -0.086 -0.483 0.552 0.738 sum -23.379 8.260 -10.362 26.873 Atomic orbital electron populations 1.22841 0.80459 1.03363 1.00023 1.88040 1.19692 1.25131 1.95384 1.22276 0.92212 0.87047 1.02356 1.20180 0.88366 0.84914 0.76845 1.90713 1.74145 1.26544 1.46972 1.46045 1.07238 1.08485 1.75402 1.20234 0.77785 0.96101 0.94834 1.22343 0.88711 0.99917 0.97347 1.60092 1.04899 1.59839 1.04704 1.21645 0.94690 0.97807 0.93981 1.19812 0.87879 0.84266 0.85164 1.90511 1.73069 1.50365 1.32783 1.41867 1.06840 1.53429 1.18043 1.19695 0.80996 1.37333 1.04704 0.87945 1.25263 1.00686 0.96918 0.95184 1.69616 1.36539 1.40611 1.07628 0.85860 0.82274 0.77670 0.78488 1.20438 1.20979 1.19444 1.22010 1.02062 1.00261 0.93135 1.21429 0.99801 0.95783 0.97860 1.21553 1.01390 0.95673 0.97203 1.21625 1.00094 0.98868 0.94594 1.21326 1.02830 0.91892 0.94372 0.87439 1.21827 0.99869 1.00255 0.98233 0.89068 0.93822 0.93888 0.90485 0.90461 0.76663 0.91105 0.93258 0.83177 0.89805 0.93894 0.77478 0.91925 0.90354 0.89907 0.92669 0.92273 0.92473 0.91488 0.92750 0.91792 0.91480 0.92593 0.93911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.36 -3.88 10.24 -55.14 -0.56 -4.45 16 3 C 0.04 0.33 6.42 36.01 0.23 0.56 16 4 C 0.51 5.64 7.27 -10.98 -0.08 5.56 16 5 O -0.51 -7.97 12.80 -14.35 -0.18 -8.15 16 6 N -0.72 -6.42 3.73 -47.60 -0.18 -6.60 16 7 C 0.20 2.19 0.17 -131.82 -0.02 2.16 16 8 C 0.05 0.66 4.02 -3.82 -0.02 0.64 16 9 N -0.66 -10.90 5.08 -115.06 -0.58 -11.48 16 10 C 0.05 0.95 6.16 -4.98 -0.03 0.92 16 11 C 0.44 10.68 7.82 -10.98 -0.09 10.59 16 12 O -0.58 -15.91 15.78 5.55 0.09 -15.82 16 13 N -0.57 -14.66 5.29 -10.96 -0.06 -14.72 16 14 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 15 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 16 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 17 N -0.90 -25.05 13.05 55.50 0.72 -24.32 16 18 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 22 C -0.14 -1.66 4.24 -26.73 -0.11 -1.77 16 23 C -0.11 -1.11 5.77 -26.73 -0.15 -1.26 16 24 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 25 C -0.11 -0.96 5.03 -26.73 -0.13 -1.10 16 26 C -0.09 -0.89 1.79 -90.62 -0.16 -1.05 16 27 H 0.11 1.44 7.46 -51.93 -0.39 1.05 16 28 C -0.14 -1.39 8.67 37.16 0.32 -1.07 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.40 2.48 6.18 -40.82 -0.25 2.23 16 35 H 0.07 0.95 6.72 -51.93 -0.35 0.60 16 36 H 0.05 0.79 6.42 -51.93 -0.33 0.46 16 37 H 0.35 6.09 6.89 -39.29 -0.27 5.82 16 38 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.39 9.79 7.90 -40.82 -0.32 9.47 16 41 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.08 1.03 6.81 -51.93 -0.35 0.68 16 43 H 0.08 1.19 6.09 -51.93 -0.32 0.87 16 44 H 0.05 0.53 7.57 -51.93 -0.39 0.13 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.05 0.38 6.94 -51.93 -0.36 0.02 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.07 0.78 6.55 -51.93 -0.34 0.44 16 51 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 52 H 0.04 0.32 6.78 -51.93 -0.35 -0.04 16 LS Contribution 401.80 15.07 6.06 6.06 Total: -1.00 -34.04 401.80 -7.87 -41.91 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -8.61 Total: 15.08 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 0.47 Total: 6.11 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.10 Total: -57.12 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.66 Total: -28.42 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.04 -7.87 -41.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715128635.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.852 kcal (2) G-P(sol) polarization free energy of solvation -34.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds