Wall clock time and date at job start Wed Apr 1 2020 00:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00457 * 2 1 4 4 C 1.50697 * 109.47327 * 180.02562 * 3 2 1 5 5 O 1.21276 * 119.99970 * 359.97438 * 4 3 2 6 6 N 1.34783 * 119.99899 * 179.97438 * 4 3 2 7 7 C 1.46499 * 119.99769 * 175.34666 * 6 4 3 8 8 C 1.52996 * 109.46948 * 61.75969 * 7 6 4 9 9 N 1.46903 * 109.47336 * 54.69589 * 8 7 6 10 10 C 1.46896 * 111.00149 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47314 * 179.97438 * 10 9 8 12 12 O 1.21299 * 119.99669 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00274 * 180.02562 * 11 10 9 14 14 C 1.37100 * 119.99844 * 180.02562 * 13 11 10 15 15 H 1.07998 * 120.00237 * 359.97438 * 14 13 11 16 16 C 1.38950 * 119.99581 * 179.97438 * 14 13 11 17 17 N 1.31418 * 120.00054 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99901 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46896 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.46945 * 119.99782 * 18 16 14 21 21 H 1.48501 * 109.46936 * 239.99901 * 18 16 14 22 22 C 1.52997 * 109.46781 * 181.75880 * 7 6 4 23 23 C 1.52996 * 109.47306 * 60.00309 * 22 7 6 24 24 C 1.53000 * 109.47399 * 59.99796 * 23 22 7 25 25 C 1.53001 * 109.46915 * 300.00029 * 24 23 22 26 26 C 1.53001 * 109.47244 * 301.76059 * 7 6 4 27 27 H 1.08995 * 109.47422 * 59.99741 * 26 7 6 28 28 C 1.52998 * 109.47107 * 180.02562 * 26 7 6 29 29 H 1.09001 * 109.47072 * 60.00126 * 1 2 3 30 30 H 1.08998 * 109.47299 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47488 * 300.00151 * 1 2 3 32 32 H 1.08999 * 109.46541 * 299.99625 * 3 2 1 33 33 H 1.09000 * 109.46955 * 59.99588 * 3 2 1 34 34 H 0.96997 * 119.99962 * 355.34794 * 6 4 3 35 35 H 1.09000 * 109.47155 * 174.68874 * 8 7 6 36 36 H 1.08998 * 109.47435 * 294.69537 * 8 7 6 37 37 H 1.00896 * 111.00277 * 56.04161 * 9 8 7 38 38 H 1.09002 * 109.47255 * 299.99773 * 10 9 8 39 39 H 1.09003 * 109.47214 * 59.99721 * 10 9 8 40 40 H 0.97005 * 119.99763 * 0.02562 * 13 11 10 41 41 H 0.97005 * 119.99543 * 180.02562 * 17 16 14 42 42 H 1.09005 * 109.47024 * 179.97438 * 22 7 6 43 43 H 1.09004 * 109.47413 * 300.00287 * 22 7 6 44 44 H 1.09005 * 109.46778 * 299.99782 * 23 22 7 45 45 H 1.08999 * 109.47470 * 180.02562 * 23 22 7 46 46 H 1.08995 * 109.47330 * 180.02562 * 24 23 22 47 47 H 1.08996 * 109.47288 * 59.99649 * 24 23 22 48 48 H 1.08995 * 109.47314 * 300.00121 * 25 24 23 49 49 H 1.09004 * 109.47270 * 179.97438 * 25 24 23 50 50 H 1.09003 * 109.47281 * 59.99651 * 28 26 7 51 51 H 1.08994 * 109.47362 * 180.02562 * 28 26 7 52 52 H 1.09008 * 109.46805 * 299.99935 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0340 0.0915 -0.0006 6 7 4.2765 2.2967 -0.0013 7 6 5.7336 2.1834 0.1010 8 6 6.2702 1.4054 -1.1021 9 7 5.8125 2.0451 -2.3427 10 6 6.3103 1.3239 -3.5217 11 6 5.8209 2.0075 -4.7724 12 8 5.1262 2.9983 -4.6898 13 7 6.1552 1.5178 -5.9828 14 6 5.7104 2.1401 -7.1206 15 1 5.0919 3.0223 -7.0470 16 6 6.0555 1.6355 -8.3684 17 7 6.8086 0.5623 -8.4579 18 14 5.4489 2.4829 -9.9188 19 1 4.6247 3.6614 -9.5486 20 1 6.6124 2.9274 -10.7274 21 1 4.6280 1.5337 -10.7127 22 6 6.3536 3.5819 0.1219 23 6 5.8169 4.3599 1.3250 24 6 6.1817 3.6210 2.6141 25 6 5.5616 2.2225 2.5933 26 6 6.0984 1.4444 1.3902 27 1 5.6566 0.4481 1.3754 28 6 7.6200 1.3266 1.4973 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6887 1.8462 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 3.8617 3.1709 -0.0694 35 1 7.3599 1.4019 -1.0758 36 1 5.9026 0.3799 -1.0650 37 1 6.0857 3.0160 -2.3711 38 1 7.4003 1.3202 -3.5119 39 1 5.9433 0.2977 -3.5016 40 1 6.7105 0.7252 -6.0488 41 1 7.0498 0.2103 -9.3291 42 1 7.4377 3.4976 0.1985 43 1 6.0937 4.1084 -0.7965 44 1 4.7328 4.4442 1.2488 45 1 6.2583 5.3564 1.3396 46 1 5.7990 4.1751 3.4712 47 1 7.2658 3.5366 2.6902 48 1 4.4776 2.3068 2.5172 49 1 5.8218 1.6959 3.5115 50 1 8.0615 2.3231 1.5123 51 1 7.8799 0.7998 2.4154 52 1 8.0028 0.7725 0.6401 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715128637.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:26 Heat of formation + Delta-G solvation = -123.640574 kcal Electronic energy + Delta-G solvation = -31721.782590 eV Core-core repulsion = 27528.032963 eV Total energy + Delta-G solvation = -4193.749627 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.99239 -38.70060 -38.14443 -37.17177 -35.32528 -33.89713 -33.48199 -32.31439 -31.21858 -30.79733 -28.80594 -27.51991 -26.41158 -25.54528 -24.85048 -23.47981 -22.33252 -21.36204 -20.58315 -19.22305 -18.33057 -17.84084 -17.50513 -16.70581 -16.36201 -16.27512 -15.88804 -15.48852 -15.09224 -14.86787 -14.65290 -14.40936 -14.19951 -14.11308 -13.82653 -13.55350 -13.27244 -13.11820 -13.00149 -12.93341 -12.66876 -12.41463 -12.16939 -12.02227 -11.88400 -11.74927 -11.57443 -11.48708 -11.41629 -11.30893 -11.13543 -10.99912 -10.55596 -10.33016 -10.31499 -10.23417 -10.19138 -9.90190 -9.48483 -9.33776 -8.83685 -8.36405 -7.94939 -7.88420 -6.38205 -3.78929 2.77321 2.88025 3.18189 3.28226 3.35373 3.96238 3.99307 4.13783 4.33415 4.47265 4.52910 4.62350 4.78859 4.93791 4.95642 5.02521 5.10234 5.14753 5.16728 5.20577 5.23608 5.25023 5.28960 5.31155 5.40402 5.50349 5.50700 5.51454 5.63823 5.66903 5.78119 5.84529 5.88284 5.89934 5.92759 6.04800 6.07722 6.15912 6.19059 6.24906 6.31476 6.34292 6.65543 6.87720 7.32147 7.58258 7.64575 7.79349 8.10450 8.40448 8.65472 9.21440 9.58994 10.10442 10.79724 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011147 B = 0.002895 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.296685 B = 9668.401027 C =11149.195940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.041 3.959 4 C 0.525 3.475 5 O -0.519 6.519 6 N -0.702 5.702 7 C 0.197 3.803 8 C 0.044 3.956 9 N -0.660 5.660 10 C 0.052 3.948 11 C 0.444 3.556 12 O -0.585 6.585 13 N -0.565 5.565 14 C -0.298 4.298 15 H 0.103 0.897 16 C 0.021 3.979 17 N -0.902 5.902 18 Si 0.929 3.071 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.130 4.130 23 C -0.116 4.116 24 C -0.121 4.121 25 C -0.109 4.109 26 C -0.102 4.102 27 H 0.093 0.907 28 C -0.150 4.150 29 H 0.044 0.956 30 H 0.089 0.911 31 H 0.040 0.960 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.398 0.602 35 H 0.032 0.968 36 H 0.094 0.906 37 H 0.342 0.658 38 H 0.041 0.959 39 H 0.085 0.915 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.058 0.942 47 H 0.065 0.935 48 H 0.059 0.941 49 H 0.059 0.941 50 H 0.059 0.941 51 H 0.054 0.946 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.450 3.927 23.848 24.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C -0.039 4.039 4 C 0.311 3.689 5 O -0.394 6.394 6 N -0.355 5.355 7 C 0.111 3.889 8 C -0.086 4.086 9 N -0.293 5.293 10 C -0.081 4.081 11 C 0.229 3.771 12 O -0.469 6.469 13 N -0.201 5.201 14 C -0.427 4.427 15 H 0.121 0.879 16 C -0.180 4.180 17 N -0.543 5.543 18 Si 0.756 3.244 19 H -0.193 1.193 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.168 4.168 23 C -0.154 4.154 24 C -0.159 4.159 25 C -0.146 4.146 26 C -0.122 4.122 27 H 0.111 0.889 28 C -0.207 4.207 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.233 0.767 35 H 0.050 0.950 36 H 0.112 0.888 37 H 0.161 0.839 38 H 0.058 0.942 39 H 0.103 0.897 40 H 0.225 0.775 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.083 0.917 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.078 0.922 51 H 0.073 0.927 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.980 3.202 23.726 24.270 hybrid contribution 0.564 0.765 -1.059 1.423 sum -3.416 3.966 22.667 23.264 Atomic orbital electron populations 1.22816 0.80681 1.03150 0.99996 1.88015 1.19518 1.25318 1.95388 1.22263 0.92388 0.86892 1.02319 1.19951 0.88167 0.84676 0.76151 1.90639 1.74203 1.26659 1.47867 1.45624 1.06215 1.08515 1.75135 1.20215 0.79531 0.95088 0.94053 1.22511 0.96650 1.00547 0.88898 1.60002 1.63598 1.06019 0.99652 1.21648 0.97114 0.98894 0.90424 1.19831 0.85691 0.87229 0.84328 1.90497 1.41781 1.27980 1.86682 1.41876 1.46296 1.27554 1.04424 1.19739 1.29324 1.10770 0.82913 0.87937 1.25265 0.96973 0.96425 0.99370 1.69631 1.36819 1.22168 1.25696 0.85808 0.78423 0.79178 0.80968 1.19259 1.20806 1.20756 1.21924 1.01191 0.94506 0.99206 1.21501 1.00981 0.98576 0.94353 1.21587 1.01052 0.95936 0.97288 1.21489 1.00190 0.95397 0.97554 1.21466 0.96457 1.00882 0.93374 0.88872 1.21978 0.95014 1.01847 1.01885 0.93711 0.89249 0.94116 0.90085 0.90880 0.76742 0.94973 0.88809 0.83852 0.94151 0.89692 0.77466 0.91959 0.90167 0.90529 0.91996 0.91759 0.92342 0.91668 0.92177 0.92230 0.92194 0.92677 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.36 -4.92 10.24 -55.14 -0.56 -5.49 16 3 C 0.04 0.46 6.42 36.00 0.23 0.69 16 4 C 0.53 7.13 7.31 -10.98 -0.08 7.05 16 5 O -0.52 -9.01 12.79 -14.35 -0.18 -9.19 16 6 N -0.70 -7.75 3.73 -47.61 -0.18 -7.92 16 7 C 0.20 2.16 0.20 -131.82 -0.03 2.14 16 8 C 0.04 0.61 3.87 -3.82 -0.01 0.60 16 9 N -0.66 -11.02 5.84 -115.06 -0.67 -11.69 16 10 C 0.05 0.98 6.17 -4.98 -0.03 0.95 16 11 C 0.44 10.79 7.82 -10.99 -0.09 10.71 16 12 O -0.59 -15.98 15.78 5.54 0.09 -15.90 16 13 N -0.56 -14.75 5.29 -10.96 -0.06 -14.81 16 14 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 15 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 16 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 17 N -0.90 -25.07 13.05 55.50 0.72 -24.34 16 18 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 C -0.13 -1.19 4.28 -26.73 -0.11 -1.31 16 23 C -0.12 -0.86 5.75 -26.73 -0.15 -1.01 16 24 C -0.12 -0.88 5.65 -26.73 -0.15 -1.03 16 25 C -0.11 -0.93 5.29 -26.73 -0.14 -1.08 16 26 C -0.10 -1.06 2.01 -90.62 -0.18 -1.24 16 27 H 0.09 1.23 6.20 -51.93 -0.32 0.91 16 28 C -0.15 -1.36 8.15 37.16 0.30 -1.06 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.40 3.59 7.38 -40.82 -0.30 3.29 16 35 H 0.03 0.42 6.73 -51.93 -0.35 0.07 16 36 H 0.09 1.56 6.31 -51.93 -0.33 1.23 16 37 H 0.34 5.66 6.70 -39.29 -0.26 5.39 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 40 H 0.39 9.89 7.90 -40.82 -0.32 9.57 16 41 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.08 0.70 6.43 -51.93 -0.33 0.37 16 43 H 0.08 0.78 6.69 -51.93 -0.35 0.43 16 44 H 0.06 0.43 6.90 -51.93 -0.36 0.07 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 48 H 0.06 0.54 7.60 -51.93 -0.39 0.15 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.06 0.48 4.80 -51.93 -0.25 0.24 16 51 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 52 H 0.06 0.58 6.55 -51.92 -0.34 0.24 16 LS Contribution 398.33 15.07 6.00 6.00 Total: -1.00 -34.46 398.33 -7.84 -42.30 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -8.40 Total: 16.05 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: 0.42 Total: 8.67 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: -0.18 Total: -58.77 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.66 Total: -30.58 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.46 -7.84 -42.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715128637.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.336 kcal (2) G-P(sol) polarization free energy of solvation -34.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds