Wall clock time and date at job start Wed Apr 1 2020 00:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00457 * 2 1 4 4 C 1.50697 * 109.47327 * 180.02562 * 3 2 1 5 5 O 1.21276 * 119.99970 * 359.97438 * 4 3 2 6 6 N 1.34783 * 119.99899 * 179.97438 * 4 3 2 7 7 C 1.46499 * 119.99769 * 175.34666 * 6 4 3 8 8 C 1.52996 * 109.46948 * 61.75969 * 7 6 4 9 9 N 1.46903 * 109.47336 * 54.69589 * 8 7 6 10 10 C 1.46896 * 111.00149 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47314 * 179.97438 * 10 9 8 12 12 O 1.21299 * 119.99669 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00274 * 180.02562 * 11 10 9 14 14 C 1.37100 * 119.99844 * 180.02562 * 13 11 10 15 15 H 1.07998 * 120.00237 * 359.97438 * 14 13 11 16 16 C 1.38950 * 119.99581 * 179.97438 * 14 13 11 17 17 N 1.31418 * 120.00054 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99901 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46896 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.46945 * 119.99782 * 18 16 14 21 21 H 1.48501 * 109.46936 * 239.99901 * 18 16 14 22 22 C 1.52997 * 109.46781 * 181.75880 * 7 6 4 23 23 C 1.52996 * 109.47306 * 60.00309 * 22 7 6 24 24 C 1.53000 * 109.47399 * 59.99796 * 23 22 7 25 25 C 1.53001 * 109.46915 * 300.00029 * 24 23 22 26 26 C 1.53001 * 109.47244 * 301.76059 * 7 6 4 27 27 H 1.08995 * 109.47422 * 59.99741 * 26 7 6 28 28 C 1.52998 * 109.47107 * 180.02562 * 26 7 6 29 29 H 1.09001 * 109.47072 * 60.00126 * 1 2 3 30 30 H 1.08998 * 109.47299 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47488 * 300.00151 * 1 2 3 32 32 H 1.08999 * 109.46541 * 299.99625 * 3 2 1 33 33 H 1.09000 * 109.46955 * 59.99588 * 3 2 1 34 34 H 0.96997 * 119.99962 * 355.34794 * 6 4 3 35 35 H 1.09000 * 109.47155 * 174.68874 * 8 7 6 36 36 H 1.08998 * 109.47435 * 294.69537 * 8 7 6 37 37 H 1.00896 * 111.00277 * 56.04161 * 9 8 7 38 38 H 1.09002 * 109.47255 * 299.99773 * 10 9 8 39 39 H 1.09003 * 109.47214 * 59.99721 * 10 9 8 40 40 H 0.97005 * 119.99763 * 0.02562 * 13 11 10 41 41 H 0.97005 * 119.99543 * 180.02562 * 17 16 14 42 42 H 1.09005 * 109.47024 * 179.97438 * 22 7 6 43 43 H 1.09004 * 109.47413 * 300.00287 * 22 7 6 44 44 H 1.09005 * 109.46778 * 299.99782 * 23 22 7 45 45 H 1.08999 * 109.47470 * 180.02562 * 23 22 7 46 46 H 1.08995 * 109.47330 * 180.02562 * 24 23 22 47 47 H 1.08996 * 109.47288 * 59.99649 * 24 23 22 48 48 H 1.08995 * 109.47314 * 300.00121 * 25 24 23 49 49 H 1.09004 * 109.47270 * 179.97438 * 25 24 23 50 50 H 1.09003 * 109.47281 * 59.99651 * 28 26 7 51 51 H 1.08994 * 109.47362 * 180.02562 * 28 26 7 52 52 H 1.09008 * 109.46805 * 299.99935 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0340 0.0915 -0.0006 6 7 4.2765 2.2967 -0.0013 7 6 5.7336 2.1834 0.1010 8 6 6.2702 1.4054 -1.1021 9 7 5.8125 2.0451 -2.3427 10 6 6.3103 1.3239 -3.5217 11 6 5.8209 2.0075 -4.7724 12 8 5.1262 2.9983 -4.6898 13 7 6.1552 1.5178 -5.9828 14 6 5.7104 2.1401 -7.1206 15 1 5.0919 3.0223 -7.0470 16 6 6.0555 1.6355 -8.3684 17 7 6.8086 0.5623 -8.4579 18 14 5.4489 2.4829 -9.9188 19 1 4.6247 3.6614 -9.5486 20 1 6.6124 2.9274 -10.7274 21 1 4.6280 1.5337 -10.7127 22 6 6.3536 3.5819 0.1219 23 6 5.8169 4.3599 1.3250 24 6 6.1817 3.6210 2.6141 25 6 5.5616 2.2225 2.5933 26 6 6.0984 1.4444 1.3902 27 1 5.6566 0.4481 1.3754 28 6 7.6200 1.3266 1.4973 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6887 1.8462 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 3.8617 3.1709 -0.0694 35 1 7.3599 1.4019 -1.0758 36 1 5.9026 0.3799 -1.0650 37 1 6.0857 3.0160 -2.3711 38 1 7.4003 1.3202 -3.5119 39 1 5.9433 0.2977 -3.5016 40 1 6.7105 0.7252 -6.0488 41 1 7.0498 0.2103 -9.3291 42 1 7.4377 3.4976 0.1985 43 1 6.0937 4.1084 -0.7965 44 1 4.7328 4.4442 1.2488 45 1 6.2583 5.3564 1.3396 46 1 5.7990 4.1751 3.4712 47 1 7.2658 3.5366 2.6902 48 1 4.4776 2.3068 2.5172 49 1 5.8218 1.6959 3.5115 50 1 8.0615 2.3231 1.5123 51 1 7.8799 0.7998 2.4154 52 1 8.0028 0.7725 0.6401 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715128637.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:25 Heat of formation + Delta-G solvation = -149.412310 kcal Electronic energy + Delta-G solvation = -31722.900137 eV Core-core repulsion = 27528.032963 eV Total energy + Delta-G solvation = -4194.867174 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.91279 -40.12949 -39.58088 -38.10385 -36.67894 -35.82319 -34.61229 -33.28817 -33.04153 -31.80818 -29.61843 -28.87207 -27.39546 -26.60922 -26.17342 -24.88044 -23.08817 -22.29782 -21.50888 -21.11704 -19.93522 -19.19246 -18.43120 -18.00301 -17.45436 -17.17663 -17.12616 -16.74839 -16.43852 -16.12608 -15.93148 -15.73758 -15.58588 -15.15690 -15.05576 -14.65484 -14.48893 -14.44107 -13.96589 -13.83269 -13.61816 -13.58060 -13.37408 -13.21211 -13.13110 -12.95024 -12.84592 -12.61774 -12.44617 -12.41428 -12.33230 -12.17260 -12.11461 -11.90886 -11.52312 -11.23348 -11.07920 -11.05112 -10.73656 -10.37792 -10.34269 -10.03136 -9.78515 -9.28299 -8.47688 -5.96953 1.35918 1.40794 1.55597 1.75917 1.99654 2.02518 2.27999 2.89162 3.18412 3.19207 3.52553 3.60568 3.76284 3.86576 3.94519 4.16743 4.20983 4.26631 4.29808 4.30502 4.36373 4.41739 4.47999 4.50290 4.51835 4.54126 4.57019 4.61851 4.69845 4.79226 4.84042 4.84844 4.94721 4.95477 5.11227 5.17967 5.22565 5.28349 5.37889 5.39707 5.44188 5.49204 5.58336 5.75599 5.86056 6.06408 6.09261 6.47409 6.57761 6.73623 7.10478 7.42930 7.53731 8.08007 8.70175 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011147 B = 0.002895 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.296685 B = 9668.401027 C =11149.195940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.041 3.959 4 C 0.515 3.485 5 O -0.564 6.564 6 N -0.691 5.691 7 C 0.199 3.801 8 C 0.049 3.951 9 N -0.666 5.666 10 C 0.065 3.935 11 C 0.442 3.558 12 O -0.617 6.617 13 N -0.574 5.574 14 C -0.333 4.333 15 H 0.081 0.919 16 C -0.015 4.015 17 N -0.922 5.922 18 Si 0.996 3.004 19 H -0.271 1.271 20 H -0.270 1.270 21 H -0.272 1.272 22 C -0.126 4.126 23 C -0.113 4.113 24 C -0.116 4.116 25 C -0.105 4.105 26 C -0.097 4.097 27 H 0.060 0.940 28 C -0.147 4.147 29 H 0.049 0.951 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.409 0.591 35 H 0.046 0.954 36 H 0.065 0.935 37 H 0.344 0.656 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.395 0.605 41 H 0.277 0.723 42 H 0.088 0.912 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.055 0.945 49 H 0.063 0.937 50 H 0.075 0.925 51 H 0.062 0.938 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.379 5.506 24.819 25.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C -0.038 4.038 4 C 0.302 3.698 5 O -0.443 6.443 6 N -0.344 5.344 7 C 0.112 3.888 8 C -0.080 4.080 9 N -0.299 5.299 10 C -0.067 4.067 11 C 0.229 3.771 12 O -0.503 6.503 13 N -0.211 5.211 14 C -0.462 4.462 15 H 0.099 0.901 16 C -0.215 4.215 17 N -0.563 5.563 18 Si 0.819 3.181 19 H -0.195 1.195 20 H -0.195 1.195 21 H -0.197 1.197 22 C -0.163 4.163 23 C -0.151 4.151 24 C -0.153 4.153 25 C -0.142 4.142 26 C -0.117 4.117 27 H 0.078 0.922 28 C -0.205 4.205 29 H 0.068 0.932 30 H 0.112 0.888 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.128 0.872 34 H 0.246 0.754 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.164 0.836 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.228 0.772 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.091 0.909 47 H 0.089 0.911 48 H 0.073 0.927 49 H 0.082 0.918 50 H 0.094 0.906 51 H 0.081 0.919 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.904 4.799 24.717 25.480 hybrid contribution 0.531 0.234 -1.322 1.444 sum -3.373 5.033 23.395 24.167 Atomic orbital electron populations 1.23006 0.78682 1.04016 1.01378 1.87959 1.21858 1.26804 1.95714 1.22382 0.90569 0.86576 1.04275 1.20528 0.89467 0.84445 0.75372 1.90623 1.75196 1.28378 1.50085 1.45596 1.06293 1.08563 1.73922 1.20247 0.79499 0.96066 0.92964 1.22485 0.97436 0.99332 0.88792 1.59960 1.64091 1.06099 0.99780 1.21472 0.98272 0.98223 0.88756 1.20704 0.84455 0.86643 0.85271 1.90463 1.43021 1.29481 1.87356 1.41952 1.46711 1.27733 1.04710 1.19729 1.30768 1.11201 0.84502 0.90076 1.26102 0.96601 0.96866 1.01906 1.69699 1.36958 1.22806 1.26875 0.84834 0.78221 0.78075 0.76974 1.19523 1.19476 1.19744 1.21901 1.01556 0.93057 0.99834 1.21503 1.01383 0.98833 0.93356 1.21561 1.01294 0.94791 0.97665 1.21457 0.99929 0.96225 0.96622 1.21367 0.97218 0.99322 0.93824 0.92199 1.21967 0.94003 1.02699 1.01812 0.93200 0.88794 0.91757 0.89467 0.87233 0.75419 0.93619 0.91663 0.83564 0.91843 0.89703 0.77198 0.91312 0.89406 0.91459 0.91463 0.90421 0.90940 0.91125 0.92658 0.91847 0.90622 0.91906 0.93406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.40 -10.96 10.24 -129.94 -1.33 -12.29 16 3 C 0.04 0.90 6.42 71.24 0.46 1.36 16 4 C 0.52 14.17 7.31 87.66 0.64 14.81 16 5 O -0.56 -20.53 12.79 16.02 0.20 -20.32 16 6 N -0.69 -14.92 3.73 -422.93 -1.58 -16.49 16 7 C 0.20 4.23 0.20 3.60 0.00 4.23 16 8 C 0.05 1.38 3.87 86.30 0.33 1.71 16 9 N -0.67 -22.26 5.84 -517.93 -3.03 -25.29 16 10 C 0.07 2.49 6.17 85.56 0.53 3.02 16 11 C 0.44 21.87 7.82 87.66 0.69 22.55 16 12 O -0.62 -34.35 15.78 -3.09 -0.05 -34.40 16 13 N -0.57 -30.61 5.29 -306.98 -1.62 -32.23 16 14 C -0.33 -19.28 9.68 84.04 0.81 -18.46 16 15 H 0.08 4.97 7.16 -2.91 -0.02 4.95 16 16 C -0.02 -0.83 5.50 84.93 0.47 -0.37 16 17 N -0.92 -51.08 13.05 21.66 0.28 -50.80 16 18 Si 1.00 43.51 29.55 68.60 2.03 45.54 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 22 C -0.13 -2.07 4.28 30.59 0.13 -1.94 16 23 C -0.11 -1.35 5.75 30.59 0.18 -1.18 16 24 C -0.12 -1.33 5.65 30.59 0.17 -1.16 16 25 C -0.10 -1.63 5.29 30.60 0.16 -1.47 16 26 C -0.10 -1.97 2.01 -10.79 -0.02 -1.99 16 27 H 0.06 1.65 6.20 -2.39 -0.01 1.64 16 28 C -0.15 -2.51 8.15 71.98 0.59 -1.92 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.41 6.88 7.38 -92.71 -0.68 6.19 16 35 H 0.05 1.15 6.73 -2.39 -0.02 1.14 16 36 H 0.06 2.26 6.31 -2.39 -0.02 2.24 16 37 H 0.34 11.27 6.70 -89.70 -0.60 10.67 16 38 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 40 H 0.39 20.29 7.90 -92.70 -0.73 19.55 16 41 H 0.28 14.32 8.31 -92.70 -0.77 13.55 16 42 H 0.09 1.33 6.43 -2.38 -0.02 1.31 16 43 H 0.07 1.26 6.69 -2.39 -0.02 1.25 16 44 H 0.07 0.75 6.90 -2.38 -0.02 0.73 16 45 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.07 0.77 6.43 -2.39 -0.02 0.75 16 48 H 0.05 0.91 7.60 -2.39 -0.02 0.89 16 49 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.08 1.05 4.80 -2.39 -0.01 1.04 16 51 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.05 0.91 6.55 -2.38 -0.02 0.90 16 Total: -1.00 -76.35 398.33 0.24 -76.12 By element: Atomic # 1 Polarization: 50.35 SS G_CDS: -1.06 Total: 49.30 kcal Atomic # 6 Polarization: 14.50 SS G_CDS: 6.38 Total: 20.88 kcal Atomic # 7 Polarization: -118.87 SS G_CDS: -5.94 Total: -124.81 kcal Atomic # 8 Polarization: -65.84 SS G_CDS: -1.17 Total: -67.02 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -76.35 0.24 -76.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715128637.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.294 kcal (2) G-P(sol) polarization free energy of solvation -76.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds