Wall clock time and date at job start Wed Apr 1 2020 00:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00222 * 2 1 4 4 C 1.50697 * 109.46874 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00217 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99960 * 180.02562 * 4 3 2 7 7 C 1.46505 * 120.00095 * 177.96393 * 6 4 3 8 8 C 1.52998 * 109.46636 * 71.45103 * 7 6 4 9 9 N 1.46900 * 109.47701 * 299.57949 * 8 7 6 10 10 C 1.46897 * 111.00346 * 190.67617 * 9 8 7 11 11 C 1.50702 * 109.46770 * 180.02562 * 10 9 8 12 12 O 1.21283 * 120.00080 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99409 * 180.02562 * 11 10 9 14 14 C 1.37094 * 119.99500 * 179.97438 * 13 11 10 15 15 H 1.08000 * 120.00248 * 0.02562 * 14 13 11 16 16 C 1.38949 * 119.99693 * 180.02562 * 14 13 11 17 17 N 1.31410 * 120.00334 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 119.99996 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46748 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46930 * 119.99875 * 18 16 14 21 21 H 1.48496 * 109.47097 * 240.00104 * 18 16 14 22 22 C 1.52997 * 109.47299 * 311.45299 * 7 6 4 23 23 C 1.53000 * 109.46980 * 299.99872 * 22 7 6 24 24 C 1.52992 * 109.47086 * 299.99814 * 23 22 7 25 25 C 1.53006 * 109.47195 * 60.00219 * 24 23 22 26 26 C 1.52999 * 109.47179 * 191.44886 * 7 6 4 27 27 H 1.08996 * 109.47126 * 180.02562 * 26 7 6 28 28 C 1.52997 * 109.47342 * 300.00387 * 26 7 6 29 29 H 1.09004 * 109.46857 * 300.00152 * 1 2 3 30 30 H 1.09007 * 109.47027 * 59.99329 * 1 2 3 31 31 H 1.09003 * 109.47775 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47608 * 299.99833 * 3 2 1 33 33 H 1.09001 * 109.46926 * 60.00291 * 3 2 1 34 34 H 0.97001 * 120.00328 * 357.96849 * 6 4 3 35 35 H 1.09009 * 109.47157 * 59.58557 * 8 7 6 36 36 H 1.09004 * 109.47281 * 179.58017 * 8 7 6 37 37 H 1.00901 * 110.99504 * 66.72238 * 9 8 7 38 38 H 1.09001 * 109.46988 * 300.00413 * 10 9 8 39 39 H 1.09001 * 109.47158 * 60.00155 * 10 9 8 40 40 H 0.96999 * 119.99901 * 0.02562 * 13 11 10 41 41 H 0.97002 * 120.00233 * 180.02562 * 17 16 14 42 42 H 1.09002 * 109.46788 * 59.99851 * 22 7 6 43 43 H 1.08996 * 109.47093 * 179.97438 * 22 7 6 44 44 H 1.09006 * 109.47182 * 60.00117 * 23 22 7 45 45 H 1.09006 * 109.46900 * 179.97438 * 23 22 7 46 46 H 1.09002 * 109.47422 * 179.97438 * 24 23 22 47 47 H 1.08996 * 109.47255 * 300.00227 * 24 23 22 48 48 H 1.08996 * 109.47013 * 59.99860 * 25 24 23 49 49 H 1.09002 * 109.46925 * 179.97438 * 25 24 23 50 50 H 1.09006 * 109.47067 * 59.99769 * 28 26 7 51 51 H 1.08998 * 109.47672 * 179.97438 * 28 26 7 52 52 H 1.09004 * 109.47108 * 299.99821 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1863 0.0006 5 8 4.0340 0.0913 0.0006 6 7 4.2765 2.2966 0.0013 7 6 5.7363 2.1813 0.0470 8 6 6.2486 1.6566 -1.2958 9 7 5.6691 0.3323 -1.5576 10 6 6.3248 -0.3123 -2.7032 11 6 5.7047 -1.6650 -2.9410 12 8 4.8048 -2.0537 -2.2268 13 7 6.1502 -2.4430 -3.9475 14 6 5.5864 -3.6738 -4.1635 15 1 4.7851 -4.0199 -3.5275 16 6 6.0460 -4.4760 -5.2008 17 7 7.0207 -4.0547 -5.9750 18 14 5.2774 -6.1529 -5.4957 19 1 4.2059 -6.3891 -4.4949 20 1 4.6968 -6.1980 -6.8618 21 1 6.3180 -7.2043 -5.3651 22 6 6.1367 1.2108 1.1600 23 6 5.6243 1.7355 2.5028 24 6 6.2361 3.1101 2.7802 25 6 5.8357 4.0806 1.6671 26 6 6.3481 3.5559 0.3243 27 1 7.4342 3.4702 0.3579 28 6 5.9477 4.5263 -0.7887 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3635 -1.0276 -0.0005 32 1 1.6887 1.8464 -0.8900 33 1 1.6887 1.8463 0.8900 34 1 3.8599 3.1721 -0.0285 35 1 5.9570 2.3442 -2.0898 36 1 7.3354 1.5778 -1.2645 37 1 4.6722 0.3957 -1.7001 38 1 6.1965 0.3071 -3.5909 39 1 7.3879 -0.4312 -2.4937 40 1 6.8701 -2.1322 -4.5185 41 1 7.3413 -4.6146 -6.6993 42 1 5.7008 0.2315 0.9623 43 1 7.2227 1.1247 1.1936 44 1 4.5382 1.8213 2.4688 45 1 5.9092 1.0439 3.2957 46 1 5.8707 3.4841 3.7366 47 1 7.3221 3.0243 2.8141 48 1 4.7497 4.1664 1.6332 49 1 6.2712 5.0600 1.8650 50 1 4.8616 4.6121 -0.8227 51 1 6.3832 5.5058 -0.5909 52 1 6.3128 4.1525 -1.7454 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715128639.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:29 Heat of formation + Delta-G solvation = -123.711837 kcal Electronic energy + Delta-G solvation = -32276.447786 eV Core-core repulsion = 28082.695069 eV Total energy + Delta-G solvation = -4193.752717 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.93204 -40.00493 -39.40544 -38.03932 -36.44843 -35.72508 -34.58856 -33.38306 -33.22497 -31.74712 -29.37454 -28.76177 -27.30054 -26.63327 -26.22059 -24.69344 -22.73505 -21.85183 -21.51566 -21.06509 -20.01634 -19.79508 -18.36813 -17.99475 -17.43095 -17.31316 -16.79708 -16.47968 -16.14762 -16.05648 -15.81565 -15.74470 -15.41149 -15.20526 -14.91055 -14.75813 -14.44953 -14.15320 -13.85993 -13.82386 -13.74123 -13.52120 -13.20065 -13.04596 -12.94741 -12.74889 -12.73189 -12.60497 -12.40027 -12.31802 -12.24827 -12.23817 -12.12387 -11.73381 -11.48837 -11.39744 -11.02245 -10.95563 -10.67776 -10.25934 -10.04518 -9.97471 -9.77489 -8.93000 -8.45187 -5.93259 1.35584 1.38990 1.54668 1.86242 2.03587 2.10636 2.30156 3.01716 3.21443 3.25003 3.57827 3.78871 3.82399 3.88700 4.03881 4.15584 4.23240 4.27587 4.32804 4.34122 4.43618 4.47860 4.51670 4.56325 4.57359 4.59124 4.64817 4.71296 4.71953 4.75349 4.85602 4.86372 4.95355 5.06023 5.16430 5.23608 5.34218 5.36650 5.38394 5.41552 5.51217 5.57591 5.70777 5.87863 5.96338 6.17115 6.25627 6.60360 6.64842 6.85267 7.16276 7.59970 7.60718 8.18797 8.73041 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012336 B = 0.003142 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.170571 B = 8910.035657 C =10303.125406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.041 3.959 4 C 0.478 3.522 5 O -0.496 6.496 6 N -0.708 5.708 7 C 0.201 3.799 8 C 0.047 3.953 9 N -0.657 5.657 10 C 0.059 3.941 11 C 0.436 3.564 12 O -0.607 6.607 13 N -0.579 5.579 14 C -0.330 4.330 15 H 0.073 0.927 16 C -0.015 4.015 17 N -0.923 5.923 18 Si 0.993 3.007 19 H -0.277 1.277 20 H -0.267 1.267 21 H -0.269 1.269 22 C -0.130 4.130 23 C -0.109 4.109 24 C -0.115 4.115 25 C -0.105 4.105 26 C -0.084 4.084 27 H 0.086 0.914 28 C -0.150 4.150 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.410 0.590 35 H 0.042 0.958 36 H 0.078 0.922 37 H 0.344 0.656 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.394 0.606 41 H 0.277 0.723 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.050 0.950 45 H 0.044 0.956 46 H 0.068 0.932 47 H 0.061 0.939 48 H 0.069 0.931 49 H 0.082 0.918 50 H 0.063 0.937 51 H 0.073 0.927 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.097 25.270 13.500 29.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.327 6.327 3 C -0.038 4.038 4 C 0.263 3.737 5 O -0.368 6.368 6 N -0.366 5.366 7 C 0.115 3.885 8 C -0.083 4.083 9 N -0.296 5.296 10 C -0.073 4.073 11 C 0.223 3.777 12 O -0.491 6.491 13 N -0.218 5.218 14 C -0.460 4.460 15 H 0.091 0.909 16 C -0.214 4.214 17 N -0.565 5.565 18 Si 0.817 3.183 19 H -0.201 1.201 20 H -0.192 1.192 21 H -0.194 1.194 22 C -0.168 4.168 23 C -0.147 4.147 24 C -0.152 4.152 25 C -0.143 4.143 26 C -0.104 4.104 27 H 0.105 0.895 28 C -0.207 4.207 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.124 0.876 34 H 0.248 0.752 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.169 0.831 38 H 0.071 0.929 39 H 0.113 0.887 40 H 0.228 0.772 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.101 0.899 50 H 0.082 0.918 51 H 0.092 0.908 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.780 23.625 14.295 28.024 hybrid contribution -0.547 -0.194 -1.416 1.530 sum -5.327 23.431 12.879 27.263 Atomic orbital electron populations 1.22968 0.78914 1.03562 1.01489 1.88071 1.21708 1.27252 1.95672 1.22430 0.90699 0.86332 1.04345 1.20875 0.89684 0.85331 0.77765 1.90956 1.73766 1.27613 1.44481 1.45816 1.06013 1.08310 1.76426 1.20252 0.79365 0.95644 0.93221 1.22636 1.00009 0.88778 0.96910 1.60584 1.09159 1.20810 1.39035 1.21581 0.99622 0.91991 0.94137 1.20979 0.85935 0.88584 0.82171 1.90573 1.33745 1.75627 1.49149 1.41932 1.34661 1.16167 1.28994 1.19662 1.17746 0.94165 1.14409 0.90919 1.26026 0.96891 1.03279 0.95207 1.69684 1.27735 1.39671 1.19363 0.84878 0.78098 0.77150 0.78209 1.20147 1.19250 1.19427 1.21862 1.00105 1.00901 0.93948 1.21414 0.99933 0.97240 0.96120 1.21531 1.00588 0.94168 0.98952 1.21552 1.01505 0.98683 0.92530 1.21340 1.00947 0.91591 0.96490 0.89532 1.21917 1.02013 0.99220 0.97564 0.91656 0.92602 0.89918 0.88644 0.87638 0.75249 0.93977 0.90370 0.83110 0.92861 0.88687 0.77217 0.91367 0.91189 0.92590 0.93081 0.93707 0.91283 0.92026 0.91221 0.89894 0.91839 0.90763 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.79 16 2 O -0.41 -12.68 10.23 -129.94 -1.33 -14.01 16 3 C 0.04 0.89 6.42 71.24 0.46 1.35 16 4 C 0.48 13.27 5.83 87.66 0.51 13.78 16 5 O -0.50 -20.33 10.43 16.01 0.17 -20.17 16 6 N -0.71 -13.34 3.79 -422.92 -1.60 -14.94 16 7 C 0.20 4.18 0.35 3.60 0.00 4.19 16 8 C 0.05 1.21 4.49 86.30 0.39 1.59 16 9 N -0.66 -24.73 3.70 -517.92 -1.91 -26.64 16 10 C 0.06 2.40 6.13 85.56 0.52 2.93 16 11 C 0.44 23.63 7.82 87.66 0.69 24.32 16 12 O -0.61 -38.45 15.78 -3.04 -0.05 -38.50 16 13 N -0.58 -32.73 5.29 -306.98 -1.62 -34.36 16 14 C -0.33 -20.36 9.68 84.04 0.81 -19.54 16 15 H 0.07 4.83 7.16 -2.91 -0.02 4.81 16 16 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 17 N -0.92 -52.62 13.05 21.66 0.28 -52.34 16 18 Si 0.99 45.82 29.55 68.60 2.03 47.85 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 C -0.13 -3.48 4.20 30.59 0.13 -3.35 16 23 C -0.11 -2.35 5.75 30.59 0.18 -2.17 16 24 C -0.11 -1.63 5.92 30.59 0.18 -1.45 16 25 C -0.11 -1.09 5.03 30.60 0.15 -0.94 16 26 C -0.08 -1.09 2.01 -10.79 -0.02 -1.11 16 27 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 28 C -0.15 -1.44 8.67 71.98 0.62 -0.82 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.41 4.60 6.27 -92.71 -0.58 4.01 16 35 H 0.04 0.96 6.45 -2.38 -0.02 0.95 16 36 H 0.08 1.93 8.05 -2.39 -0.02 1.91 16 37 H 0.34 14.30 5.19 -89.69 -0.47 13.83 16 38 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.10 3.53 8.12 -2.39 -0.02 3.51 16 40 H 0.39 21.09 7.90 -92.71 -0.73 20.36 16 41 H 0.28 14.65 8.31 -92.71 -0.77 13.88 16 42 H 0.07 2.68 5.17 -2.39 -0.01 2.67 16 43 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.05 1.13 7.19 -2.38 -0.02 1.12 16 45 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 46 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.07 0.62 7.11 -2.39 -0.02 0.61 16 49 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.06 0.48 6.65 -2.38 -0.02 0.47 16 51 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 52 H 0.05 0.64 6.44 -2.38 -0.02 0.62 16 Total: -1.00 -85.24 397.80 1.46 -83.77 By element: Atomic # 1 Polarization: 50.00 SS G_CDS: -0.83 Total: 49.17 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: 6.34 Total: 20.17 kcal Atomic # 7 Polarization: -123.43 SS G_CDS: -4.86 Total: -128.28 kcal Atomic # 8 Polarization: -71.46 SS G_CDS: -1.21 Total: -72.67 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -85.24 1.46 -83.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715128639.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.941 kcal (2) G-P(sol) polarization free energy of solvation -85.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds