Wall clock time and date at job start Wed Apr 1 2020 01:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99594 * 2 1 4 4 C 1.52997 * 109.46627 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47000 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47208 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99803 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99675 * 180.27843 * 6 5 4 9 9 C 1.46927 * 120.63303 * 359.72079 * 8 6 5 10 10 C 1.53193 * 108.77386 * 126.36982 * 9 8 6 11 11 C 1.53045 * 109.31211 * 54.63774 * 10 9 8 12 12 H 1.09001 * 109.46023 * 58.65235 * 11 10 9 13 13 N 1.46896 * 109.45965 * 178.61410 * 11 10 9 14 14 C 1.46897 * 110.99765 * 274.99444 * 13 11 10 15 15 C 1.50705 * 109.46991 * 180.02562 * 14 13 11 16 16 O 1.21294 * 119.99992 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00064 * 180.02562 * 15 14 13 18 18 C 1.37094 * 120.00339 * 180.02562 * 17 15 14 19 19 H 1.08001 * 119.99386 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00281 * 180.02562 * 18 17 15 21 21 N 1.31409 * 119.99821 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99920 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46936 * 59.99903 * 22 20 18 24 24 H 1.48502 * 109.46825 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47009 * 300.00048 * 22 20 18 26 26 C 1.53043 * 109.53613 * 298.63732 * 11 10 9 27 27 H 1.09007 * 109.49699 * 301.40886 * 26 11 10 28 28 C 1.53004 * 109.49720 * 181.31740 * 26 11 10 29 29 C 1.46925 * 120.62614 * 179.44850 * 8 6 5 30 30 H 1.08995 * 109.47252 * 60.00069 * 1 2 3 31 31 H 1.09008 * 109.47047 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46999 * 299.99909 * 1 2 3 33 33 H 1.08995 * 109.46862 * 60.00194 * 3 2 1 34 34 H 1.09001 * 109.46599 * 299.99766 * 3 2 1 35 35 H 1.09000 * 109.47849 * 59.99872 * 4 3 2 36 36 H 1.08998 * 109.47443 * 299.99739 * 4 3 2 37 37 H 1.09009 * 109.46730 * 59.99606 * 5 4 3 38 38 H 1.08998 * 109.46846 * 300.00150 * 5 4 3 39 39 H 1.08997 * 109.58480 * 246.16089 * 9 8 6 40 40 H 1.08999 * 109.58607 * 6.44143 * 9 8 6 41 41 H 1.08996 * 109.49520 * 174.58628 * 10 9 8 42 42 H 1.09000 * 109.49888 * 294.65354 * 10 9 8 43 43 H 1.00892 * 111.00476 * 38.95242 * 13 11 10 44 44 H 1.08998 * 109.47922 * 300.00800 * 14 13 11 45 45 H 1.09005 * 109.47071 * 60.00829 * 14 13 11 46 46 H 0.97005 * 119.99891 * 0.02562 * 17 15 14 47 47 H 0.97004 * 119.99674 * 179.97438 * 21 20 18 48 48 H 1.08996 * 109.46864 * 59.99276 * 28 26 11 49 49 H 1.08997 * 109.47215 * 179.97438 * 28 26 11 50 50 H 1.08998 * 109.46989 * 299.99515 * 28 26 11 51 51 H 1.09000 * 109.59194 * 353.41299 * 29 8 6 52 52 H 1.09004 * 109.59115 * 113.83935 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5825 -0.0013 6 6 5.6600 2.4635 -0.0013 7 8 6.1816 1.3686 -0.0004 8 7 6.4239 3.5739 0.0039 9 6 5.8066 4.9072 0.0033 10 6 6.3749 5.7141 1.1751 11 6 7.9026 5.7287 1.0858 12 1 8.2066 6.1658 0.1346 13 7 8.4497 6.5293 2.1892 14 6 8.4785 7.9560 1.8404 15 6 9.0451 8.7437 2.9936 16 8 9.3912 8.1726 4.0062 17 7 9.1671 10.0826 2.8998 18 6 9.6829 10.7991 3.9486 19 1 9.9911 10.2906 4.8502 20 6 9.8083 12.1796 3.8521 21 7 9.4328 12.7983 2.7552 22 14 10.5105 13.1559 5.2815 23 1 11.8908 12.6895 5.5688 24 1 10.5379 14.5984 4.9296 25 1 9.6604 12.9559 6.4826 26 6 8.4347 4.2969 1.1820 27 1 8.1102 3.8507 2.1221 28 6 9.9635 4.3154 1.1256 29 6 7.8896 3.4740 0.0161 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8463 -0.8900 35 1 3.8568 0.6439 -0.8908 36 1 3.8574 0.6437 0.8891 37 1 3.8363 3.1236 0.8887 38 1 3.8356 3.1231 -0.8913 39 1 6.0338 5.4147 -0.9341 40 1 4.7266 4.8099 0.1137 41 1 5.9980 6.7358 1.1298 42 1 6.0693 5.2548 2.1152 43 1 7.9298 6.3755 3.0400 44 1 9.1032 8.1022 0.9593 45 1 7.4657 8.2988 1.6286 46 1 8.8899 10.5394 2.0901 47 1 9.5199 13.7621 2.6880 48 1 10.3507 4.9034 1.9577 49 1 10.3420 3.2956 1.1947 50 1 10.2871 4.7604 0.1847 51 1 8.1839 2.4315 0.1374 52 1 8.2903 3.8623 -0.9203 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715419950.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:00 Heat of formation + Delta-G solvation = -130.136367 kcal Electronic energy + Delta-G solvation = -29724.719146 eV Core-core repulsion = 25530.687840 eV Total energy + Delta-G solvation = -4194.031306 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.62212 -38.79999 -38.29558 -37.81460 -35.17716 -34.19723 -33.89105 -33.03469 -31.31460 -30.93110 -28.68524 -27.09422 -26.83220 -25.63792 -24.61835 -23.34252 -22.42678 -22.15286 -20.44863 -19.44919 -19.03307 -17.89732 -17.51938 -16.81433 -16.78329 -16.09317 -15.99002 -15.81955 -15.27010 -15.14851 -14.94968 -14.71990 -14.36798 -14.34270 -13.90650 -13.86188 -13.62488 -13.39214 -12.96451 -12.76391 -12.45644 -12.45105 -12.23003 -12.17510 -12.14445 -11.97654 -11.62417 -11.56199 -11.45888 -11.41692 -11.31892 -11.13068 -11.01662 -10.81553 -10.49217 -10.45800 -10.23150 -10.10237 -10.01454 -9.52111 -8.91372 -8.47745 -8.04754 -7.97451 -6.43936 -3.84765 2.37228 2.65430 3.18507 3.24334 3.28763 3.34730 3.88488 4.04539 4.16280 4.27117 4.40918 4.52508 4.65415 4.67902 4.74402 4.78776 4.86158 4.91089 4.97065 4.99309 5.03145 5.03709 5.09583 5.16016 5.22129 5.24445 5.26570 5.35126 5.46814 5.51987 5.58088 5.66951 5.70645 5.72854 5.84174 5.87248 5.89980 5.96819 6.10111 6.20855 6.24788 6.31719 6.57970 6.72512 7.12607 7.20735 7.52909 7.63001 7.92102 8.03985 8.59016 9.15774 9.52015 10.03566 10.73650 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018538 B = 0.001740 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.056779 B =16092.434487 C =17045.077841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.061 3.939 4 C -0.104 4.104 5 C -0.138 4.138 6 C 0.516 3.484 7 O -0.540 6.540 8 N -0.612 5.612 9 C 0.111 3.889 10 C -0.169 4.169 11 C 0.093 3.907 12 H 0.078 0.922 13 N -0.659 5.659 14 C 0.052 3.948 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.102 0.898 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.274 1.274 26 C -0.090 4.090 27 H 0.073 0.927 28 C -0.136 4.136 29 C 0.115 3.885 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.349 0.651 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.080 0.920 49 H 0.046 0.954 50 H 0.049 0.951 51 H 0.093 0.907 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.298 -17.753 -10.975 25.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.016 4.016 4 C -0.142 4.142 5 C -0.178 4.178 6 C 0.304 3.696 7 O -0.417 6.417 8 N -0.346 5.346 9 C -0.013 4.013 10 C -0.209 4.209 11 C -0.018 4.018 12 H 0.097 0.903 13 N -0.290 5.290 14 C -0.081 4.081 15 C 0.225 3.775 16 O -0.467 6.467 17 N -0.200 5.200 18 C -0.430 4.430 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.110 4.110 27 H 0.091 0.909 28 C -0.194 4.194 29 C -0.007 4.007 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.169 0.831 44 H 0.103 0.897 45 H 0.060 0.940 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.099 0.901 49 H 0.066 0.934 50 H 0.068 0.932 51 H 0.111 0.889 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.998 -18.764 -10.508 25.660 hybrid contribution -1.105 1.642 0.198 1.989 sum -15.103 -17.123 -10.309 25.051 Atomic orbital electron populations 1.22753 0.80911 1.02868 1.00002 1.87893 1.19773 1.27962 1.95419 1.22552 0.94044 0.84776 1.00215 1.21228 0.92169 0.95795 1.05037 1.21584 0.92280 0.99391 1.04517 1.20560 0.89421 0.83812 0.75774 1.90710 1.74973 1.26265 1.49792 1.48169 1.07104 1.05991 1.73290 1.21723 0.97892 0.82583 0.99076 1.22746 0.98418 1.00750 0.99025 1.21622 0.90512 0.94012 0.95663 0.90334 1.60147 1.58308 1.05514 1.04984 1.21696 0.99466 0.88436 0.98513 1.19826 0.85434 0.82972 0.89232 1.90529 1.54412 1.69620 1.32163 1.41857 1.55788 1.05001 1.17370 1.19656 1.37895 0.89124 0.96330 0.87991 1.25251 0.97665 0.96887 0.98058 1.69602 1.47777 1.10282 1.26671 0.85921 0.79580 0.78022 0.80719 1.19866 1.20976 1.19942 1.21353 0.96992 0.94335 0.98359 0.90895 1.21640 0.93444 1.01167 1.03145 1.21680 0.78394 1.02190 0.98474 0.94055 0.89561 0.93999 0.93168 0.93237 0.90271 0.90213 0.88609 0.88705 0.90974 0.89731 0.90346 0.91055 0.83075 0.89696 0.94005 0.77503 0.91832 0.90097 0.93444 0.93157 0.88851 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.54 10.70 -35.23 -0.38 -3.91 16 3 C 0.06 0.42 5.94 37.16 0.22 0.64 16 4 C -0.10 -0.85 4.87 -26.73 -0.13 -0.98 16 5 C -0.14 -0.93 4.05 -27.88 -0.11 -1.05 16 6 C 0.52 5.37 7.70 -10.98 -0.08 5.29 16 7 O -0.54 -7.73 15.40 5.55 0.09 -7.64 16 8 N -0.61 -5.68 2.98 -173.03 -0.52 -6.20 16 9 C 0.11 0.78 6.35 -3.71 -0.02 0.75 16 10 C -0.17 -1.49 5.33 -26.61 -0.14 -1.63 16 11 C 0.09 1.01 1.89 -67.67 -0.13 0.88 16 12 H 0.08 0.84 7.80 -51.93 -0.40 0.44 16 13 N -0.66 -9.70 5.05 -107.94 -0.55 -10.25 16 14 C 0.05 0.84 5.96 -4.97 -0.03 0.81 16 15 C 0.44 10.04 7.82 -10.98 -0.09 9.95 16 16 O -0.58 -15.49 15.78 5.55 0.09 -15.40 16 17 N -0.56 -13.94 5.29 -10.96 -0.06 -14.00 16 18 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 19 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.15 13.05 55.50 0.72 -23.42 16 22 Si 0.93 20.83 29.55 -169.99 -5.02 15.80 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 C -0.09 -0.98 2.58 -90.72 -0.23 -1.22 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 28 C -0.14 -1.56 9.03 37.16 0.34 -1.23 16 29 C 0.12 1.16 5.69 -3.93 -0.02 1.14 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.40 8.14 -51.92 -0.42 -0.03 16 32 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 36 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 37 H 0.10 0.51 7.69 -51.92 -0.40 0.11 16 38 H 0.09 0.45 7.94 -51.93 -0.41 0.03 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.42 5.93 -51.93 -0.31 0.11 16 41 H 0.08 0.68 7.43 -51.93 -0.39 0.29 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.35 5.48 8.18 -39.30 -0.32 5.16 16 44 H 0.08 1.30 8.05 -51.93 -0.42 0.88 16 45 H 0.04 0.61 7.42 -51.93 -0.39 0.22 16 46 H 0.39 9.24 7.90 -40.82 -0.32 8.91 16 47 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 48 H 0.08 1.13 7.57 -51.93 -0.39 0.74 16 49 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.09 1.07 7.01 -51.93 -0.36 0.71 16 52 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 416.65 15.07 6.28 6.28 Total: -1.00 -33.36 416.65 -8.02 -41.39 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -9.12 Total: 10.60 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 0.43 Total: 6.75 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.39 Total: -53.87 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.20 Total: -26.96 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.36 -8.02 -41.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715419950.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.750 kcal (2) G-P(sol) polarization free energy of solvation -33.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds